A functional proteomic approach to the identification and characterization of protein composition in wheat leaf

Current Proteomics

Volumn 5, Issue 4, 2008, Pages 253-266

  Hsieh, Jung Feng ^a   Chen, Shui Tein ^b  

^a FU JEN CATHOLIC UNIVERSITY   (Taiwan)

^b INSTITUTE OF BIOLOGICAL CHEMISTRY   (Taiwan)

Author keywords

2D PAGE; Mass spectrometry; Protein composition; Proteomics; Wheat leaf

Indexed keywords

TRITICUM AESTIVUM;

EID: 57349090842     PISSN: 15701646     EISSN: None     Source Type: Journal    
DOI: 10.2174/157016408786733806     Document Type: Article

References (37)

1. Ahram, M., Best, C.J., Flaig, M.J., Gillespie, J.W., Leiva, I.M., Chuaqui, R.F., Zhou, G., Shu, H., et al. (2002). Proteomic analysis of human prostate cancer. Mol. Carcinog. 33: 9-15.
2. Ashburner, M., Ball, C.A., Blake, J.A., Botstein, D., Butler, H., Cherry, J.M., Davis, A.P., Dolinski, K., et al. (2000). Gene ontology: Tool for the unification of biology. The gene ontology consortium. Nat. Genet. 25: 25-9.
3. Bahrman, N., Negroni, L., Jaminon, O. and Le, G.J. (2004). Wheat leaf proteome analysis using sequence data of proteins separated by two-dimensional electrophoresis. Proteomics 4: 2672-84.
4. Berggren, K., Chernokalskaya, E., Steinberg, T.H., Kemper, C., Lopez, M.F., Diwu, Z., Haugland, R.P. and Patton, W.F. (2000). Background-free, high sensitivity staining of proteins in one- and two-dimensional sodium dodecyl sulfate-polyacrylamide gels using a luminescent ruthenium complex. Electrophoresis 21: 2509-21.
5. Chao, Y.C. and Nylander-French, L.A. (2004). Determination of keratin protein in a tape-stripped skin sample from jet fuel exposed skin. Ann. Occup. Hyg. 48: 65-73.
6. Clark, J.I., Brooksbank, C. and Lomax, J. (2005). It's all GO for plant scientists. Plant Physiol. 138: 1268-79.
7. Dhingra, V., Li, Q., Allison, A.B., Stallknecht, D.E. and Fu, Z.F. (2005). Proteomic profiling and neurodegeneration in west-nile-virus-infected neurons. J. Biomed. Biotechnol. 2005: 271-9.
8. Dhugga, K.S., Tiwari, S.C. and Ray, P.M. (1997). A reversibly glycosylated polypeptide possibly involved in plant cell wall synthesis: purification, gene cloning, and trans-Golgi localization. Proc. Natl. Acad. Sci. USA 94: 7679-84.
9. Donnelly, B.E., Madden, R.D., Ayoubi, P., Porter, D.R. and Dillwith, J.W. (2005). The wheat (Triticum aestivum L.) leaf proteome. Proteomics 5: 1624-33.
10. Englard, S. and Seifter, S. (1990). Precipitation techniques. Methods Enzymol. 182: 285-300.
11. Farag, A.M. and Hassan, M.A. (2004). Purification, characterization and immobilization of a keratinase from Aspergillus oryzae. Enzyme Microb. Technol. 34: 85-93.
12. Gygi, S.P. and Aebersold, R. (2000). Mass spectrometry and proteomics. Curr. Opin. Chem. Biol. 4: 489-94.
13. Juan, H.F., Lin, J.Y., Chang, W.H., Wu, C.Y., Pan, T.L., Tseng, M.J., Khoo, K.H. and Chen, S.T. (2002). Biomic study of human myeloid leukemia cells differentiation to macrophages using DNA array, proteomic, and bioinformatic analytical methods. Electrophoresis 23: 2490-504.
14. Juan, H.F., Wang, I.H., Huang, T.C., Li, J.J., Chen, S.T. and Huang, H.C. (2006). Proteomics analysis of a novel compound: cyclic RGD in breast carcinoma cell line MCF-7. Proteomics 6: 2991-3000.
15. Kochkina, V.M. (2004). Isolation, purification and crystallization of aspartate aminotransferase from wheat grain. Biochem. (Mosc.) 69: 897-900.
16. + oxidoreductase from thylakoid membranes, rebinding to depleted membranes, and identification of the binding site. J. Biol. Chem. 261: 12154-8.
17. Morrissey, B. and Downard, K.M. (2006). A proteomics approach to survey the antigenicity of the influenza virus by mass spectrometry. Proteomics 6: 2034-41.
18. Muth, C.M., Glenz, Y., Klaus, M., Radermacher, P., Speit, G. and Leverve, X. (2004). Influence of an orally effective SOD on hyperbaric oxygen-related cell damage. Free Radic. Res. 38: 927-32.
19. Patterson, S.D. and Aebersold, R. (1995). Mass spectrometric approaches for the identification of gel-separated proteins. Electrophoresis 16: 1791-814.
20. Plaxton, W.C. (1996). The organization and regulation of plant glycolysis. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47: 185-214.
21. Porubleva, L., Vander, V.K., Kothari, S., Oliver, D.J. and Chitnis, P.R. (2001). The proteome of maize leaves: use of gene sequences and expressed sequence tag data for identification of proteins with peptide mass fingerprints. Electrophoresis 22: 1724-38.
22. Rampitsch, C., Bykova, N.V., McCallum, B., Beimcik, E. and Ens, W. (2006). Analysis of the wheat and Puccinia triticina (leaf rust) proteomes during a susceptible host-pathogen interaction. Proteomics 6: 1897-907.
23. Rashidi, H.H. and Buehler, L.K. (2000). Bioinformatics basics: Application in biological science and medicine, CRC Press, Boca Raton, pp. 133-4.
24. Rostoks, N., Schmierer, D., Kudrna, D. and Kleinhofs, A. (2003). Barley putative hypersensitive induced reaction genes: genetic mapping, sequence analyses and differential expression in disease lesion mimic mutants. Theor. Appl. Genet. 107: 1094-101.
25. Salt, L.J., Robertson, J.A., Jenkins, J.A., Mulholland, F. and Mills, E.N. (2005). The identification of foam-forming soluble proteins from wheat (Triticum aestivum) dough. Proteomics 5: 1612-23.
26. Saxena, S.K., Ibrahim, A.N., Chaudhury, S. and Thukral, S.S. (2000). Development of a computer software for analysis of SDS-PAGE protein fingerprints of bacterial isolates. Indian J. Exp. Biol. 38: 167-76.
27. Su, T.M. and Yang, Y.S. (2000). Identification, purification and characterization of a thermophilic imidase from pig liver. Protein Expr. Purif. 19: 289-97.
28. Tantipaiboonwong, P., Sinchaikul, S., Sriyam, S., Phutrakul, S. and Chen, S.T. (2005). Different techniques for urinary protein analysis of normal and lung cancer patients. Proteomics 5: 1140-9.
29. Topanurak, S., Sinchaikul, S., Phutrakul, S., Sookkheo, B. and Chen, S.T. (2005). Proteomics viewed on stress response of thermophilic bacterium Bacillus stearothermophilus TLS33. Proteomics 5: 3722-30.
30. Trisiriroj, A., Jeyachok, N. and Chen, S.T. (2004). Proteomics characterization of different bran proteins between aromatic and nonaromatic rice (Oryza sativa L. ssp. indica). Proteomics 4: 2047-57.
31. Wan, J., Wang, J. and Cheng, H. (2001). Proteomic analysis of apoptosis initiation induced by all-trans retinoic acid in human acute promyelocytic leukemia cells. Electrophoresis 22: 3026-37.
32. Watson, B.S., Asirvatham, V.S., Wang, L. and Sumner, L.W. (2003). Mapping the proteome of barrel medic (Medicago truncatula). Plant Physiol. 131: 1104-23.
33. Whitney, S.M. and Andrews, T.J. (2003). Photosynthesis and growth of tobacco with a substituted bacterial Rubisco mirror the properties of the introduced enzyme. Plant Physiol. 133: 287-94.
34. Wu, G., Wilen, R.W., Robertson, A.J. and Gusta, L.V. (1999). Isolation, chromosomal localization and differential expression of mitochondrial manganese superoxide dismutase and chloroplastic copper/zinc superoxide dismutase genes in wheat. Plant Physiol. 120: 513-20.
35. Wu, T.L. (2006). Two-dimensional difference gel electrophoresis. Methods Mol. Biol. 328: 71-95.
36. Yahata, E., Maruyama-Funatsuki, W., Nishio, Z., Tabiki, T., Takata, K., Yamamoto, Y., Tanida, M. and Saruyama, H. (2005). Wheat cultivar-specific proteins in grain revealed by 2-DE and their application to cultivar identification of flour. Proteomics 5: 3942-53.
37. Yates, J.R. (2000). Mass spectrometry: from genomics to proteomics. Trends Genet. 16: 5-8.