Crystal structure of the cytochrome P450cam mutant that exhibits the same spectral perturbations induced by putidaredoxin binding

Journal of Biological Chemistry

Volumn 279, Issue 41, 2004, Pages 42844-42849

  Nagano, Shingo ^a   Tosha, Takehiko ^c   Ishimori, Koichiro ^c   Morishima, Isao ^c   Poulos, Thomas L ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c KYOTO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; BIOCHEMISTRY; ELECTRON TRANSITIONS; ENZYMES; MAGNETIC RESONANCE IMAGING; MUTAGENESIS; REDOX REACTIONS;

CAMPHOR; CYTOCHROME; MONOOXYGENATION; MUTANTS;

CRYSTAL STRUCTURE;

ARGININE; CAMPHOR; CAMPHOR 5 MONOOXYGENASE; CARBON MONOXIDE; CYSTEINE; FERROUS ION; HEME; MUTANT PROTEIN; OXYGEN; PUTIDAREDOXIN; THREONINE;

ARTICLE; BINDING AFFINITY; BINDING SITE; CHEMICAL REACTION; COMPLEX FORMATION; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; CRYSTAL STRUCTURE; ELECTRON TRANSPORT; ENZYME ACTIVE SITE; ENZYME ANALYSIS; ENZYME BINDING; ENZYME STRUCTURE; ENZYME SUBSTRATE; GENE MUTATION; HYDROXYLATION; LIGAND BINDING; MOLECULAR MODEL; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; OXIDATION REDUCTION REACTION; OXYGENATION; PRIORITY JOURNAL; PROTON NUCLEAR MAGNETIC RESONANCE; PROTON TRANSPORT; REACTION ANALYSIS; STEREOCHEMISTRY; STRUCTURE ANALYSIS; TEMPERATURE DEPENDENCE; WILD TYPE;

ASPARTIC ACID; BINDING SITES; CAMPHOR; CAMPHOR 5-MONOOXYGENASE; CARBON MONOXIDE; CRYSTALLOGRAPHY, X-RAY; CYSTEINE; CYSTINE; ELECTRONS; ESCHERICHIA COLI; FERREDOXINS; LEUCINE; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MUTATION; PROTEIN BINDING; PROTEIN CONFORMATION; TEMPERATURE; THREONINE;

DRYOBALANOPS;

EID: 5644282610     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M404217200     Document Type: Article

References (41)

1. Katagiri, M., Ganguli, B. N., and Gunsalus, I. C. (1968) J. Biol. Chem. 243, 3543-3546
2. Gunsalus, I. C., Meeks, J. R., Lipscomb, J. D., Debrunner, P., and Munck, E. (1974) in Molecular Mechanism of Oxygen Activation (Hayaishi, O., ed) pp. 559-613, Academic Press, New York
3. Imai, M., Shimada, H., Watanabe, Y., Matsushima-Hibiya, Y., Makino, R., Koga, H., Horiuchi, T., and Ishimura, Y. (1989) Proc. Natl. Acad. Sci. U. S. A. 86, 7823-7827
4. Martinis, S. A., Atkins, W. M., Stayton, P. S., and Sligar, S. G. (1989) J. Am. Chem. Soc. 111, 9252-9253
5. Gerber, N. C., and Sligar, S. G. (1992) J. Am. Chem. Soc. 114, 8742-8743
6. Gerber, N. C., and Sligar, S. G. (1994) J. Biol. Chem. 269, 4260-4266
7. Pochapsky, S. S., Pochapsky, T. C., and Wei, J. W. (2003) Biochemistry 42, 5649-5656
8. Tosha, T., Yoshioka, S., Takahashi, S., Ishimori, K., Shimada, H., and Morishima, I. (2003) J. Biol Chem. 278, 39809-39821
9. Lipscomb, J. D. (1980) Biochemistry 19, 3590-3599
10. Shimada, H., Nagano, S., Ariga, Y., Unno, M., Egawa, T., Hishiki, T., Ishimura, Y., Masuya, F., Obata, T., and Hori, H. (1999) J. Biol. Chem. 274, 9363-9369
11. Unno, M., Christian, J. F., Benson, D. E., Gerber, N. C., Sligar, S. G., and Champion, P. M. (1997) J. Am. Chem. Soc. 119, 6614-6620
12. Sjodin, T., Christian, J. F., Macdonald, I. D., Davydov, R., Unno, M., Sligar, S. G., Hoffman, B. M., and Champion, P. M. (2001) Biochemistry 40, 6852-6859
13. Unno, M., Christian, J. F., Sjodin, T., Benson, D. E., Macdonald, I. D., Sugar, S. G., and Champion, P. M. (2002) J. Biol. Chem. 277, 2547-2553
14. Ishimura, Y., Makino, R., Iizuka, T., and Shimada, H. (1987) in Cytochrome P450: New Trends (Sato, R., Omura, T., Imai, Y., and Fujii-Kuriyama, Y., eds) Vol. 17, pp. 151, Yamada Science Foundation, Nara
15. Nagano, S., Shimada, H., Tarumi, A., Hishiki, T., Kimata-Ariga, Y., Egawa, T., Suematsu, M., Park, S.-Y., Adachi, S., Shiro, Y., and Ishimura, Y. (2003) Biochemistry 42, 14507-14514
16. Lipscomb, J. D., Sligar, S. G., Namtvedt, M. J., and Gunsalus, I. C. (1976) J. Biol. Chem. 251, 1116-1124
17. Tosha, T., Yoshioka, S., Ishimori, K., and Morishima, I. (2004) J. Biol. Chem. 279, 42836-42843
18. Yoshioka, S., Takahashi, S., Ishimori, K., and Morishima, I. (2000) J. Inorg. Biochem. 81, 141-151
19. Raag, R., and Poulos, T. L. (1989) Biochemistry 28, 7586-7592
20. Schlichting, I., Berendzen, J., Chu, K., Stock, A. M., Maves, S. A., Benson, D. E., Sweet, R. M., Ringe, D., Petsko, G. A., and Sligar, S. G. (2000) Science 287, 1615-1622
21. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
22. Vagin, A., and Teplyakov, A. (1997) J. Appl. Crystallogr. 30, 1022-1025
23. Read, R. J. (2001) Acta Crystallogr. Sect. D Biol. Crystallogr. 57, 1373-1382
24. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. Sect. A. 47, 110-119
25. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
26. Fedorov, R., Ghosh, D. K., and Schlichting, I. (2003) Arch. Biochem. Biophys. 409, 25-31
27. Yoshioka, S., Tosha, T., Takahashi, S., Ishimori, K., Hori, H., and Morishima, I. (2002) J. Am. Chem. Soc. 124, 14571-14579
28. Leys, D., Mowat, C. G., McLean, K. J., Richmond, A., Chapman, S. K., Walkinshaw, M. D., and Munro, A. W. (2003) J. Biol. Chem. 278, 5141-5147
29. Cole, S. T., Brosch, R., Parkhill, J., Garnier, T., Churcher, C., Harris, D., Gordon, S. V., Eiglmeier, K., Gas, S., Barry, C. E., III, Tekaia, F., Badcock, K., Basham, D., Brown, D., Chillingworth, T., Connor, R., Davies, R., Devlin, K., Feltwell, T., Gentles, S., Hamlin, N., Holroyd, S., Hornsby, T., Jagels, K., Krogh, A., McLean, J., Moule, S., Murphy, L., Oliver, K., Osborne, J., Quail, M. A., Rajandream, M.-A., Rogers, J., Rutter, S., Seeger, K., Skelton, J., Squares, R., Squares, S., Sulston, J. E., Taylor, K., Whitehead, S., and Barrell, B. G. (1998) Nature 393, 537-544
30. Twisk, J., Hoekman, M. F., Mager, W. H., Moorman, A. F., de Boer, P. A., Scheja, L., Princen, H. M., and Gebhardt, R. (1995) J. Clin. Investig. 95, 1235-1243
31. Kanemoto, R. H., Powell, A. T., Akiyoshi, D. E., Regier, D. A., Kerstetter, R. A., Nester, E. W., Hawes, M. C., and Gordon, M. P. (1989) J. Bacteriol. 171, 2506-2512
32. Sun, H. R., Smirnov, V. V., and DiMagno, S. G. (2003) Inorg. Chem. 42, 6032-6040
33. La Mar, G. N., Satterlee, J. D., and De Ropp, J. S. (1999) in The Porphyrin Handbook (Kadish, K. M., Smith, K. M., and Guilard, R., eds) Vol. 5, pp. 185-298, Academic Press, San Diego
34. Sharrock, M., Debrunner, P. G., Schulz, C., Lipscomb, J. D., Marshall, V., and Gunsalus, I. C. (1976) Biochim. Biophys. Acta 420, 8-26
35. Johnson, C. E., and Bovey, F. A. (1958) J. Chem. Phys. 29, 1012-1014
36. Case, D. A. (1995) J. Biomol. NMR 6, 341-346
37. Kamachi, T., and Yoshizawa, K. (2003) J. Am. Chem. Soc. 125, 4652-4661
38. Yoshizawa, K., Kamachi, T., and Shiota, Y. (2001) J. Am. Chem. Soc. 123, 9806-9816
39. Kleywegt, G. J., and Jones, T. A. (1995) Structure (Lond.) 3, 535-540
40. Nickerson, D., Wong, L. L., and Rao, Z. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 470-472
41. Collaborative Computational Project, Number 4 (1994) Acta Crystallogr. Sect. D Biol. Crystallogr. 50, 760-763