Understanding the disorder of the DNA base cytosine on the Au(111) surface

Journal of Chemical Physics

Volumn 129, Issue 18, 2008, Pages

  Kelly, Ross E A ^a,b   Lukas, Maya ^c,d   Kantorovich, Lev N ^a   Otero, Roberto ^c,e   Xu, Wei ^c   Mura, Manuela ^a   Lægsgaard, Erik ^c   Stensgaard, Ivan ^c   Besenbacher, Flemming ^c  

^a KING'S COLLEGE LONDON   (United Kingdom)

^b UNIVERSITY COLLEGE LONDON   (United Kingdom)

^c AARHUS UNIVERSITY   (Denmark)

^d KARLSRUHE INSTITUTE OF TECHNOLOGY   (Germany)

^e UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

DENSITY FUNCTIONAL THEORY; DNA; FILAMENTS (LAMP); FORMING; GENES; GLASS TRANSITION; MICROSCOPIC EXAMINATION; NUCLEIC ACIDS; ORGANIC ACIDS; PIEZOELECTRIC ACTUATORS; SCANNING TUNNELING MICROSCOPY; ULTRAHIGH VACUUM;

AB INITIO; AU(111) SURFACE; DISORDERED STRUCTURES; DNA BASE; NANOCAGES; ORDERED ARRANGEMENTS; STRUCTURAL MOTIFS; T JUNCTIONS; ULTRAHIGH VACUUM SCANNING TUNNELING MICROSCOPIES; VACUUM CONDITIONS;

VACUUM;

CYTOSINE; DNA; GOLD;

ARTICLE; CHEMISTRY; DIMERIZATION; KINETICS; NANOTECHNOLOGY; QUANTUM THEORY; SURFACE PROPERTY;

CYTOSINE; DIMERIZATION; DNA; GOLD; KINETICS; NANOTECHNOLOGY; QUANTUM THEORY; SURFACE PROPERTIES;

EID: 56349137330     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3001585     Document Type: Article

References (60)

1. R. Otero, M. Lukas, R. E. A. Kelly, W. Xu, E. Lgsgaard, I. Stensgaard, L. N. Kantorovich, and F. Besenbacher, Science 319, 312 (2008).
2. R. E. A. Kelly and L. N. Kantorovich, J. Mater. Chem. 16, 1894 (2006).
3. W. M. Heckl, D. P. E. Smith, G. Binnig, H. Klagges, T. W. Hansch, and J. Maddocks, Proc. Natl. Acad. Sci. U.S.A. 88, 8003 (1991).
4. N. J. Tao, J. A. DeRose, and S. M. Lindsay, J. Phys. Chem. 97, 910 (1993).
5. H. Tanaka, T. Nakagawa, and T. Kawai, Surf. Sci. 364, L575 (1996).
6. T. Wandlowski, D. Lampner, and S. M. Lindsay, J. Electroanal. Chem. 404, 215 (1996).
7. S. J. Sowerby, W. M. Heckl, and G. B. Petersen, J. Mol. Evol. 43, 419 (1996).
8. M. Furukawa, H. Tanaka, and T. Kawai, Surf. Sci. 392, L33 (1997).
9. T. Kawai, H. Tanaka, and T. Nakagawa, Surf. Sci. 386, 124 (1997).
10. J. E. Freund, M. Edelwirth, P. Kröbel, and W. M. Heckl, Phys. Rev. B 55, 5394 (1997).
11. S. J. Sowerby and W. M. Heckl, Origins Life Evol. Biosphere 28, 283 (1998).
12. S. J. Sowerby, M. Edelwirth, and W. M. Heckl, J. Phys. Chem. B 102, 5914 (1998).
13. M. Furukawa, H. Tanaka, and T. Kawai, Surf. Sci. 445, 1 (2000).
14. M. Furukawa, H. Tanaka, and T. Kawai, J. Chem. Phys. 115, 3419 (2001).
15. Q. Chen, D. J. Frankel, and N. V. Richardson, Langmuir 18, 3219 (2002).
16. R. Otero, M. Schöck, L. M. Molina, E. Laegsgaard, I. Stensgaard, B. Hammer, and F. Besenbacher, Angew. Chem., Int. Ed. 44, 2270 (2005).
17. W. Xu, R. E. A. Kelly, M. Schöck, R. Otero, E. Lgsgaard, I. Stensgaard, L. N. Kantorovich, and F. Besenbacher, Small 3, 2011 (2007).
18. L. M. A. Perdigão, P. A. Staniec, N. R. Champness, R. E. A. Kelly, L. N. Kantorovich, and P. H. Beton, Phys. Rev. B 73, 195423 (2006).
19. W. Mamdouh, M. Dong, R. E. A. Kelly, L. N. Kantorovich, and F. Besenbacher, J. Phys. Chem. B 111, 12048 (2007).
20. M. Edelwirth, J. Freund, S. J. Sowerby, and W. M. Heckl, Surf. Sci. 417, 201 (1998).
21. T. Nakagawa, H. Tanaka, and T. Kawai, Surf. Sci. 370, L144 (1997).
22. J. C. Poler, R. M. Zimmermann, and E. C. Cox, Langmuir 11, 2689 (1995).
23. T. Boland and B. D. Ratner, Langmuir 10, 3845 (1994).
24. K. Ataka and M. Osawa, J. Electroanal. Chem. 460, 188 (1999).
25. M. Kasaya, H. Tabata, and T. Kawai, Surf. Sci. 357-358, 195 (1996).
26. K. Shinoda, W. Shinoda, C. C. Liew, S. Tsuzuki, Y. Morikawa, and M. Mikami, Surf. Sci. 556, 109 (2004).
27. R. E. A. Kelly and L. N. Kantorovich, Surf. Sci. 589, 139 (2005).
28. R. E. A. Kelly, W. Xu, M. Lukas, R. Otero, M. Mura, J. Y. Lee, E. Lgsgaard, I. Stensgaard, L. N. Kantorovich, and F. Besenbacher, Small, 4, 1494 (2008).
29. M. Furukawa, T. Yamada, S. Katano, M. Kawai, H. Ogasawara, and A. Nilsson, Surf. Sci. 601, 5433 (2007).
30. S. Xu, M. Dong, E. Rauls, R. Otero, T. R. Linderoth, and F. Besenbacher, Nano Lett. 6, 1434 (2006).
31. W. Mamdouh, M. Dong, S. Xu, E. Rauls, and F. Besenbacher, J. Am. Chem. Soc. 128, 13305 (2006).
32. W. Mamdouh, R. E. A. Kelly, M. Dong, L. N. Kantorovich, and F. Besenbacher, J. Am. Chem. Soc. 130, 695 (2008).
33. J. V. Barth, Annu. Rev. Phys. Chem. 437, 375 (2007).
34. J. V. Barth, G. Costantini, and K. Kern, Nature (London) 437, 671 (2005).
35. S. De Feyter, A. Miura, S. Yao, Z. Chen, F. Wurthner, P. Jonkheijm, A. P. H. J. Schenning, E. W. Meijer, and C. F. De Schryver, Nano Lett. 5, 77 (2005).
36. S. De Feyter and C. F. De Schryver, Chem. Soc. Rev. 32, 139 (2003).
37. D. L. Keeling, N. S. Oxtoby, C. Wilson, M. J. Humphry, N. R. Champness, and P. H. Beton, Nano Lett. 3, 9 (2003).
38. J. A. Theobald, N. S. Oxtoby, M. A. Phillips, N. R. Champness, and P. H. Beton, Nature (London) 424, 1029 (2003).
39. T. Kawasaki, K. Suzuki, Y. Hakoda, and K. Soai, Angew. Chem. 47, 496 (2008).
40. N. J. Tao and Z. Shi, J. Phys. Chem. 98, 1464 (1994).
41. M. Komiyama, M. Gu, T. Shimaguchi, H.-M. Wu, and T. Okada, Appl. Phys. A: Mater. Sci. Process. 66, S635 (1998).
42. D. J. Frankel, Q. Chen, and N. V. Richardson, J. Chem. Phys. 124, 204704 (2006).
43. R. E. A. Kelly, Y. J. Lee, and L. N. Kantorovich, J. Phys. Chem. B 109, 22045 (2005).
44. P. Hobza, M. Kabelac, J. Sponer, P. Mejzlik, and J. Vondrasek, J. Comput. Chem. 18, 1136 (1997).
45. R. E. A. Kelly, Y. J. Lee, and L. N. Kantorovich, J. Phys. Chem. B 109, 11933 (2005).
46. R. E. A. Kelly and L. N. Kantorovich, J. Phys. Chem. B 110, 2249 (2006).
47. L. Petersen, M. Schunack, B. Schaefer, T. R. Linderoth, P. B. Rasmussen, P. T. Sprunger, E. Laegsgaard, I. Stensgaard, and F. Besenbacher, Rev. Sci. Instrum. 72, 1438 (2001).
48. E. Laegsgaard, O. Osterlund, P. Thostrup, P. B. Rasmussen, I. Stensgaard, and F. Besenbacher, Rev. Sci. Instrum. 72, 3537 (2001).
49. J. V. Barth, H. Brune, G. Ertl, and R. J. Behm, Phys. Rev. B 42, 9307 (1990).
50. S. Rapino and F. Zerbetto, Langmuir 21, 2512 (2005).
51. P. Ordejon, E. Artacho, and J. M. Soler, Phys. Rev. B 53, R10441 (1996).
52. J. M. Soler, E. Artacho, J. D. Gale, A. Garcia, J. Junquera, P. Ordejon, and D. Sanchez-Portal, J. Phys.: Condens. Matter 14, 2745 (2002).
53. J. P. Perdew, K. Burke, and M. Ernzerhof, Phys. Rev. Lett. 77, 3865 (1996).
54. R. E. A. Kelly and L. N. Kantorovich, J. Phys. Chem. C 111, 3883 (2007).
55. S. F. Boys and F. Bernardi, Mol. Phys. 19, 553 (1970).
56. S. Piana and A. Bilic, J. Phys. Chem. B 110, 23467 (2006).
57. D. L. Barker and R. E. Marsh, Acta Crystallogr. 17, 1581 (1964).
58. M. Mirzaei, F. Elmi, and N. L. Hadipour, J. Phys. Chem. B 110, 10991 (2006).
59. J. P. Garcia-Teran, O. Castillo, A. Luque, U. Garcia-Couceiro, G. Beobide, and P. Roman, Cryst. Growth Des. 7, 2594 (2007).
60. Z. Yang and M. T. Rodgers, Phys. Chem. Chem. Phys. 6, 2749 (2004).