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Volumn 51, Issue 21, 2008, Pages 6654-6664

Hit identification and binding mode predictions by rigorous free energy simulations

Author keywords

[No Author keywords available]

Indexed keywords

ESTROGEN RECEPTOR ALPHA;

EID: 56249130101     PISSN: 00222623     EISSN: None     Source Type: Journal    
DOI: 10.1021/jm800524s     Document Type: Article
Times cited : (59)

References (71)
  • 1
    • 8844263008 scopus 로고    scopus 로고
    • Docking and scoring in virtual screening for drug discovery: Methods and applications
    • Kitchen, D. B.; Decornez, H.; Furr, J. R.; Bajorath, J. Docking and scoring in virtual screening for drug discovery: methods and applications. Nat. Rev. Drug Discovery 2004, 3, 935-949.
    • (2004) Nat. Rev. Drug Discovery , vol.3 , pp. 935-949
    • Kitchen, D.B.1    Decornez, H.2    Furr, J.R.3    Bajorath, J.4
  • 3
    • 33745199815 scopus 로고    scopus 로고
    • Virtual ligand screening: Strategies, perspectives and limitations
    • Klebe, G. Virtual ligand screening: strategies, perspectives and limitations. Drug Discovery Today 2006, 11, 580-594.
    • (2006) Drug Discovery Today , vol.11 , pp. 580-594
    • Klebe, G.1
  • 4
    • 33748276474 scopus 로고    scopus 로고
    • Protein-ligand docking: Current status and future challenges
    • Sousa, S. F.; Fernandes, P. A.; Ramos, M. J. Protein-ligand docking: current status and future challenges. Proteins 2006, 65, 15-26.
    • (2006) Proteins , vol.65 , pp. 15-26
    • Sousa, S.F.1    Fernandes, P.A.2    Ramos, M.J.3
  • 6
    • 33749245117 scopus 로고    scopus 로고
    • Prediction of protein-ligand interactions. Docking and scoring: Successes and gaps
    • Leach, A. R.; Shoichet, B. K.; Peishoff, C. E. Prediction of protein-ligand interactions. Docking and scoring: successes and gaps. J. Med. Chem. 2006, 49, 5851-5855.
    • (2006) J. Med. Chem , vol.49 , pp. 5851-5855
    • Leach, A.R.1    Shoichet, B.K.2    Peishoff, C.E.3
  • 8
    • 34249278087 scopus 로고    scopus 로고
    • Ranking poses in structure-based lead discovery and optimization: Current trends in scoring function development
    • Rajamani, R.; Good, A. C. Ranking poses in structure-based lead discovery and optimization: current trends in scoring function development. Curr. Opin. Drug Discovery Dev. 2007, 10, 308-315.
    • (2007) Curr. Opin. Drug Discovery Dev , vol.10 , pp. 308-315
    • Rajamani, R.1    Good, A.C.2
  • 10
    • 0242443693 scopus 로고    scopus 로고
    • Force fields for protein simulations
    • Ponder, J. W.; Case, D. A. Force fields for protein simulations. Adv. Protein Chem. 2003, 66, 27-85.
    • (2003) Adv. Protein Chem , vol.66 , pp. 27-85
    • Ponder, J.W.1    Case, D.A.2
  • 11
    • 4444351490 scopus 로고    scopus 로고
    • Empirical force fields for biological macromolecules: Overview and issues
    • Mackerell, A. D. Empirical force fields for biological macromolecules: overview and issues. J. Comput. Chem. 2004, 25, 1584-1604.
    • (2004) J. Comput. Chem , vol.25 , pp. 1584-1604
    • Mackerell, A.D.1
  • 12
    • 84986532462 scopus 로고
    • Free-Energy Difference Calculations by Thermodynamic Integration: Difficulties in Obtaining a Precise Value
    • Mitchell, M. J.; McCammon, J. A. Free-Energy Difference Calculations by Thermodynamic Integration: Difficulties in Obtaining a Precise Value. J. Comput. Chem. 1991, 12, 271-275.
    • (1991) J. Comput. Chem , vol.12 , pp. 271-275
    • Mitchell, M.J.1    McCammon, J.A.2
  • 13
    • 0000441039 scopus 로고
    • Conformational Substates and Uncertainty in Macromolecular Free-Energy Calculations
    • Hodel, A.; Simonson, T.; Fox, R. O.; Brunger, A. T. Conformational Substates and Uncertainty in Macromolecular Free-Energy Calculations. J. Phys. Chem. 1993, 97, 3409-3417.
    • (1993) J. Phys. Chem , vol.97 , pp. 3409-3417
    • Hodel, A.1    Simonson, T.2    Fox, R.O.3    Brunger, A.T.4
  • 14
    • 0023262075 scopus 로고
    • Free-Energy Perturbation Calculations on Binding and Catalysis after Mutating Asn-155 in Subtilisin
    • Rao, S. N.; Singh, U. C.; Bash, P. A.; Kollman, P. A. Free-Energy Perturbation Calculations on Binding and Catalysis after Mutating Asn-155 in Subtilisin. Nature 1987, 328, 551-554.
    • (1987) Nature , vol.328 , pp. 551-554
    • Rao, S.N.1    Singh, U.C.2    Bash, P.A.3    Kollman, P.A.4
  • 15
    • 0034084991 scopus 로고    scopus 로고
    • Combined molecular mechanical and continuum solvent approach (MM-PBSA/GBSA) to predict ligand binding
    • Massova, I.; Kollman, P. A. Combined molecular mechanical and continuum solvent approach (MM-PBSA/GBSA) to predict ligand binding. Perspect. Drug Discovery Des. 2000, 18, 113-135.
    • (2000) Perspect. Drug Discovery Des , vol.18 , pp. 113-135
    • Massova, I.1    Kollman, P.A.2
  • 16
    • 20444377245 scopus 로고    scopus 로고
    • Validation and use of the MM-PBSA approach for drug discovery
    • Kuhn, B.; Gerber, P.; Schulz-Gasch, T.; Stahl, M. Validation and use of the MM-PBSA approach for drug discovery. J. Med. Chem. 2005, 48, 4040-4048.
    • (2005) J. Med. Chem , vol.48 , pp. 4040-4048
    • Kuhn, B.1    Gerber, P.2    Schulz-Gasch, T.3    Stahl, M.4
  • 17
    • 28144441347 scopus 로고    scopus 로고
    • Evaluating the molecular mechanics Poisson-Boltzmann surface area free energy method using a congeneric series of ligands to p38 MAP kinase
    • Pearlman, D. A. Evaluating the molecular mechanics Poisson-Boltzmann surface area free energy method using a congeneric series of ligands to p38 MAP kinase. J. Med. Chem. 2005, 48, 7796-7807.
    • (2005) J. Med. Chem , vol.48 , pp. 7796-7807
    • Pearlman, D.A.1
  • 18
    • 0028155689 scopus 로고
    • New Method for Predicting Binding Affinity in Computer-Aided Drug Design
    • Aqvist, J.; Medina, C.; Samuelsson, J. E. New Method for Predicting Binding Affinity in Computer-Aided Drug Design. Protein Eng. 1994, 7, 385-391.
    • (1994) Protein Eng , vol.7 , pp. 385-391
    • Aqvist, J.1    Medina, C.2    Samuelsson, J.E.3
  • 19
    • 0033576654 scopus 로고    scopus 로고
    • Binding constants of neuraminidase inhibitors: An investigation of the linear interaction energy method
    • Wall, I. D.; Leach, A. R.; Salt, D. W.; Ford, M. G.; Essex, J. W. Binding constants of neuraminidase inhibitors: an investigation of the linear interaction energy method. J. Med. Chem. 1999, 42, 5142-5152.
    • (1999) J. Med. Chem , vol.42 , pp. 5142-5152
    • Wall, I.D.1    Leach, A.R.2    Salt, D.W.3    Ford, M.G.4    Essex, J.W.5
  • 20
    • 34249040810 scopus 로고    scopus 로고
    • Physics-based methods for studying protein-ligand interactions
    • Huang, N.; Jacobson, M. P. Physics-based methods for studying protein-ligand interactions. Curr. Opin. Drug Discovery Dev. 2007, 10, 325-331.
    • (2007) Curr. Opin. Drug Discovery Dev , vol.10 , pp. 325-331
    • Huang, N.1    Jacobson, M.P.2
  • 21
    • 33845335781 scopus 로고    scopus 로고
    • Towards predictive ligand design with free-energy based computational methods
    • Foloppe, N.; Hubbard, R. Towards predictive ligand design with free-energy based computational methods. Curr. Med. Chem. 2006, 13, 3583-3608.
    • (2006) Curr. Med. Chem , vol.13 , pp. 3583-3608
    • Foloppe, N.1    Hubbard, R.2
  • 22
    • 33845493850 scopus 로고    scopus 로고
    • Protein-ligand binding affinity predictions by implicit solvent simulations: A tool for lead optimization?
    • Michel, J.; Verdonk, M. L.; Essex, J. W. Protein-ligand binding affinity predictions by implicit solvent simulations: a tool for lead optimization? J. Med. Chem. 2006, 49, 7427-7439.
    • (2006) J. Med. Chem , vol.49 , pp. 7427-7439
    • Michel, J.1    Verdonk, M.L.2    Essex, J.W.3
  • 24
    • 33845290650 scopus 로고    scopus 로고
    • FEP-guided selection of bicyclic heterocycles in lead optimization for non-nucleoside inhibitors of HIV-1 reverse transcriptase
    • Kim, J. T.; Hamilton, A. D.; Bailey, C. M.; Domoal, R. A.; Wang, L. G.; Anderson, K. S.; Jorgensen, W. L. FEP-guided selection of bicyclic heterocycles in lead optimization for non-nucleoside inhibitors of HIV-1 reverse transcriptase. J. Am. Chem. Soc. 2006, 128, 15372-15373.
    • (2006) J. Am. Chem. Soc , vol.128 , pp. 15372-15373
    • Kim, J.T.1    Hamilton, A.D.2    Bailey, C.M.3    Domoal, R.A.4    Wang, L.G.5    Anderson, K.S.6    Jorgensen, W.L.7
  • 25
    • 0346458810 scopus 로고    scopus 로고
    • Free energies of binding of polychlorinated biphenyls to the estrogen receptor from a single simulation
    • Oostenbrink, C.; van Gunsteren, W. F. Free energies of binding of polychlorinated biphenyls to the estrogen receptor from a single simulation. Proteins 2004, 54, 237-246.
    • (2004) Proteins , vol.54 , pp. 237-246
    • Oostenbrink, C.1    van Gunsteren, W.F.2
  • 26
    • 0031058541 scopus 로고    scopus 로고
    • The statistical-thermodynamic basis for computation of binding affinities: A critical review
    • Gilson, M. K.; Given, J. A.; Bush, B. L.; McCammon, J. A. The statistical-thermodynamic basis for computation of binding affinities: A critical review. Biophys. J. 1997, 72, 1047-1069.
    • (1997) Biophys. J , vol.72 , pp. 1047-1069
    • Gilson, M.K.1    Given, J.A.2    Bush, B.L.3    McCammon, J.A.4
  • 28
    • 33749238080 scopus 로고    scopus 로고
    • Calculation of standard binding free energies: Aromatic molecules in the T4 lysozyme L99A mutant
    • Deng, Y. Q.; Roux, B. Calculation of standard binding free energies: aromatic molecules in the T4 lysozyme L99A mutant. J. Chem. Theory Comput. 2006, 2, 1255-1273.
    • (2006) J. Chem. Theory Comput , vol.2 , pp. 1255-1273
    • Deng, Y.Q.1    Roux, B.2
  • 29
    • 0141682863 scopus 로고    scopus 로고
    • Absolute binding free energies: A quantitative approach for their calculation
    • Boresch, S.; Tettinger, F.; Leitgeb, M.; Karplus, M. Absolute binding free energies: a quantitative approach for their calculation. J. Phys. Chem. B 2003, 107, 9535-9551.
    • (2003) J. Phys. Chem. B , vol.107 , pp. 9535-9551
    • Boresch, S.1    Tettinger, F.2    Leitgeb, M.3    Karplus, M.4
  • 30
    • 35948935283 scopus 로고    scopus 로고
    • Protein-ligand complexes: Computation of the relative free energy of different scaffolds and binding modes
    • Michel, J.; Verdonk, M. L.; Essex, J. W. Protein-ligand complexes: computation of the relative free energy of different scaffolds and binding modes. J. Chem. Theory Comput. 2007, 3, 1645-1655.
    • (2007) J. Chem. Theory Comput , vol.3 , pp. 1645-1655
    • Michel, J.1    Verdonk, M.L.2    Essex, J.W.3
  • 32
    • 18744411546 scopus 로고    scopus 로고
    • Free energies of ligand binding for structurally diverse compounds
    • Oostenbrink, C.; van Gunsteren, W. F. Free energies of ligand binding for structurally diverse compounds. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 6750-6754.
    • (2005) Proc. Natl. Acad. Sci. U.S.A , vol.102 , pp. 6750-6754
    • Oostenbrink, C.1    van Gunsteren, W.F.2
  • 33
    • 33646237785 scopus 로고    scopus 로고
    • Generation and selection of novel estrogen receptor ligands using the de novo structure-based design tool, SkelGen
    • Firth-Clark, S.; Willems, H. M. G.; Williams, A.; Harris, W. Generation and selection of novel estrogen receptor ligands using the de novo structure-based design tool, SkelGen. J. Chem. Inf. Model. 2006, 46, 642-647.
    • (2006) J. Chem. Inf. Model , vol.46 , pp. 642-647
    • Firth-Clark, S.1    Willems, H.M.G.2    Williams, A.3    Harris, W.4
  • 34
    • 33644638521 scopus 로고    scopus 로고
    • Estrogen receptors and human disease
    • Deroo, B. J.; Korach, K. S. Estrogen receptors and human disease. J. Clin. Invest. 2006, 116, 561-570.
    • (2006) J. Clin. Invest , vol.116 , pp. 561-570
    • Deroo, B.J.1    Korach, K.S.2
  • 36
    • 0037077233 scopus 로고    scopus 로고
    • Interaction of transcriptional intermediary factor 2 nuclear receptor box peptides with the coactivator binding site of estrogen receptor alpha
    • Warnmark, A.; Treuter, E.; Gustafsson, J. A.; Hubbard, R. E.; Brzozowski, A. M.; Pike, A. C. W. Interaction of transcriptional intermediary factor 2 nuclear receptor box peptides with the coactivator binding site of estrogen receptor alpha. J. Biol. Chem. 2002, 277, 21862-21868.
    • (2002) J. Biol. Chem , vol.277 , pp. 21862-21868
    • Warnmark, A.1    Treuter, E.2    Gustafsson, J.A.3    Hubbard, R.E.4    Brzozowski, A.M.5    Pike, A.C.W.6
  • 37
    • 0031552362 scopus 로고    scopus 로고
    • Development and validation of a genetic algorithm for flexible docking
    • Jones, G.; Willett, P.; Glen, R. C.; Leach, A. R.; Taylor, R. Development and validation of a genetic algorithm for flexible docking. J. Mol. Biol. 1997, 267, 727-748.
    • (1997) J. Mol. Biol , vol.267 , pp. 727-748
    • Jones, G.1    Willett, P.2    Glen, R.C.3    Leach, A.R.4    Taylor, R.5
  • 40
    • 0032153192 scopus 로고    scopus 로고
    • Empirical scoring functions. II. The testing of an empirical scoring function for the prediction of ligand-receptor binding affinities and the use of Bayesian regression to improve the quality of the model
    • Murray, C. W.; Auton, T. R.; Eldridge, M. D. Empirical scoring functions. II. The testing of an empirical scoring function for the prediction of ligand-receptor binding affinities and the use of Bayesian regression to improve the quality of the model. J. Comput.-Aided Mol. Des. 1998, 12, 503-519.
    • (1998) J. Comput.-Aided Mol. Des , vol.12 , pp. 503-519
    • Murray, C.W.1    Auton, T.R.2    Eldridge, M.D.3
  • 41
    • 7044239742 scopus 로고
    • Free-Energy Calculations: Applications to Chemical and Biochemical Phenomena
    • Kollman, P. Free-Energy Calculations: Applications to Chemical and Biochemical Phenomena. Chem. Rev. 1993, 93, 2395-2417.
    • (1993) Chem. Rev , vol.93 , pp. 2395-2417
    • Kollman, P.1
  • 43
    • 36549093449 scopus 로고
    • The Finite-Difference Thermodynamic Integration, Tested on Calculating the Hydration Free-Energy Difference between Acetone and Dimethylamine in Water
    • Mezei, M. The Finite-Difference Thermodynamic Integration, Tested on Calculating the Hydration Free-Energy Difference between Acetone and Dimethylamine in Water. J. Chem. Phys. 1987, 86, 7084-7088.
    • (1987) J. Chem. Phys , vol.86 , pp. 7084-7088
    • Mezei, M.1
  • 44
    • 36849122972 scopus 로고
    • High-temperature equation of state by a perturbation method
    • Zwanzig, R. W. High-temperature equation of state by a perturbation method. J. Chem. Phys. 1954, 22, 1420-1426.
    • (1954) J. Chem. Phys , vol.22 , pp. 1420-1426
    • Zwanzig, R.W.1
  • 45
    • 0346350789 scopus 로고    scopus 로고
    • The development of replicaexchange-based free-energy methods
    • Woods, C. J.; Essex, J. W.; King, M. A. The development of replicaexchange-based free-energy methods. J. Phys. Chem. B 2003, 107, 13703-13710.
    • (2003) J. Phys. Chem. B , vol.107 , pp. 13703-13710
    • Woods, C.J.1    Essex, J.W.2    King, M.A.3
  • 46
    • 0346255348 scopus 로고    scopus 로고
    • Enhanced configurational sampling in binding free-energy calculations
    • Woods, C. J.; Essex, J. W.; King, M. A. Enhanced configurational sampling in binding free-energy calculations. J. Phys. Chem. B 2003, 107, 13711-13718.
    • (2003) J. Phys. Chem. B , vol.107 , pp. 13711-13718
    • Woods, C.J.1    Essex, J.W.2    King, M.A.3
  • 48
    • 0004504539 scopus 로고
    • Monte Carlo Simulation of Differences in Free Energies of Hydration
    • Jorgensen, W. L.; Ravimohan, C. Monte Carlo Simulation of Differences in Free Energies of Hydration. J. Chem. Phys. 1985, 83, 3050-3054.
    • (1985) J. Chem. Phys , vol.83 , pp. 3050-3054
    • Jorgensen, W.L.1    Ravimohan, C.2
  • 49
    • 0024365336 scopus 로고
    • Hidden Thermodynamics of Mutant Proteins: A Molecular-Dynamics Analysis
    • Gao, J.; Kuczera, K.; Tidor, B.; Karplus, M. Hidden Thermodynamics of Mutant Proteins: A Molecular-Dynamics Analysis. Science 1989, 244, 1069-1072.
    • (1989) Science , vol.244 , pp. 1069-1072
    • Gao, J.1    Kuczera, K.2    Tidor, B.3    Karplus, M.4
  • 50
    • 36449002336 scopus 로고    scopus 로고
    • Zacharias, M.; Straatsma, T. P.; McCammon, J. A. Separation-Shifted Scaling, a New Scaling Method for Lennard-Jones Interactions in Thermodynamic Integration. J. Chem. Phys. 1994, 100, 9025-9031.
    • Zacharias, M.; Straatsma, T. P.; McCammon, J. A. Separation-Shifted Scaling, a New Scaling Method for Lennard-Jones Interactions in Thermodynamic Integration. J. Chem. Phys. 1994, 100, 9025-9031.
  • 51
    • 33748252631 scopus 로고    scopus 로고
    • On the use of orientational restraints and symmetry corrections in alchemical free energy calculations
    • Mobley, D. L.; Chodera, J. D.; Dill, K. A. On the use of orientational restraints and symmetry corrections in alchemical free energy calculations. J. Chem. Phys. 2006, 125.
    • (2006) J. Chem. Phys , pp. 125
    • Mobley, D.L.1    Chodera, J.D.2    Dill, K.A.3
  • 52
    • 0032968133 scopus 로고    scopus 로고
    • Implicit solvent models
    • Roux, B.; Simonson, T. Implicit solvent models. Biophys. Chem. 1999, 78, 1-20.
    • (1999) Biophys. Chem , vol.78 , pp. 1-20
    • Roux, B.1    Simonson, T.2
  • 53
    • 0033654297 scopus 로고    scopus 로고
    • Generalized Born models of macromolecular solvation effects
    • Bashford, D.; Case, D. A. Generalized Born models of macromolecular solvation effects. Annu. Rev. Phys. Chem. 2000, 51, 129-152.
    • (2000) Annu. Rev. Phys. Chem , vol.51 , pp. 129-152
    • Bashford, D.1    Case, D.A.2
  • 54
    • 0344778061 scopus 로고
    • Semi-analytical Treatment of Solvation for Molecular Mechanics and Dynamics
    • Still, W. C.; Tempczyk, A.; Hawley, R. C.; Hendrickson, T. Semi-analytical Treatment of Solvation for Molecular Mechanics and Dynamics. J. Am. Chem. Soc. 1990, 112, 6127-6129.
    • (1990) J. Am. Chem. Soc , vol.112 , pp. 6127-6129
    • Still, W.C.1    Tempczyk, A.2    Hawley, R.C.3    Hendrickson, T.4
  • 55
    • 0002636134 scopus 로고
    • Pairwise Solute Descreening of Solute Charges from a Dielectric Medium
    • Hawkins, G. D.; Cramer, C. J.; Truhlar, D. G. Pairwise Solute Descreening of Solute Charges from a Dielectric Medium. Chem. Phys. Lett. 1995, 246, 122-129.
    • (1995) Chem. Phys. Lett , vol.246 , pp. 122-129
    • Hawkins, G.D.1    Cramer, C.J.2    Truhlar, D.G.3
  • 56
    • 1842479952 scopus 로고    scopus 로고
    • Exploring protein native states and large-scale conformational changes with a modified Generalized Born model
    • Onufriev, A.; Bashford, D.; Case, D. A. Exploring protein native states and large-scale conformational changes with a modified Generalized Born model. Proteins 2004, 55, 383-394.
    • (2004) Proteins , vol.55 , pp. 383-394
    • Onufriev, A.1    Bashford, D.2    Case, D.A.3
  • 57
    • 0025398721 scopus 로고    scopus 로고
    • Vriend, G. WHAT IF: a molecular modeling and drug design program. J. Mol. Graph. 1990, 8, 52-56.
    • Vriend, G. WHAT IF: a molecular modeling and drug design program. J. Mol. Graph. 1990, 8, 52-56.
  • 58
    • 0001398008 scopus 로고    scopus 로고
    • How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
    • Wang, J. M.; Cieplak, P.; Kollman, P. A. How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J. Comput. Chem. 2000, 21, 1049-1074.
    • (2000) J. Comput. Chem , vol.21 , pp. 1049-1074
    • Wang, J.M.1    Cieplak, P.2    Kollman, P.A.3
  • 59
    • 0033963034 scopus 로고    scopus 로고
    • Schaftenaar, G.; Noordik, J. H. Molden: a pre- and post-processing program for molecular and electronic structures. J. Comput.-Aided Mol. Des. 2000, 14, 123-134.
    • Schaftenaar, G.; Noordik, J. H. Molden: a pre- and post-processing program for molecular and electronic structures. J. Comput.-Aided Mol. Des. 2000, 14, 123-134.
  • 61
    • 0001041959 scopus 로고    scopus 로고
    • Fast, efficient generation of high-quality atomic charges. AM1-BCC model: 1. Method
    • Jakalian, A.; Bush, B. L.; Jack, D. B.; Bayly, C. I. Fast, efficient generation of high-quality atomic charges. AM1-BCC model: 1. Method. J. Comput. Chem. 2000, 21, 132-146.
    • (2000) J. Comput. Chem , vol.21 , pp. 132-146
    • Jakalian, A.1    Bush, B.L.2    Jack, D.B.3    Bayly, C.I.4
  • 65
    • 0015861774 scopus 로고
    • Relationship between Inhibition Constant (K1) and Concentration of Inhibitor Which Causes 50 Per Cent Inhibition (150) of an Enzymatic Reaction
    • Cheng, Y.; Prusoff, W. H. Relationship between Inhibition Constant (K1) and Concentration of Inhibitor Which Causes 50 Per Cent Inhibition (150) of an Enzymatic Reaction. Biochem. Pharmacol. 1973, 22, 3099-3108.
    • (1973) Biochem. Pharmacol , vol.22 , pp. 3099-3108
    • Cheng, Y.1    Prusoff, W.H.2
  • 66
    • 33845480636 scopus 로고    scopus 로고
    • Efficient generalized Born models for Monte Carlo simulations
    • Michel, J.; Taylor, R. D.; Essex, J. W. Efficient generalized Born models for Monte Carlo simulations. J. Chem. Theory Comput. 2006, 2, 732-739.
    • (2006) J. Chem. Theory Comput , vol.2 , pp. 732-739
    • Michel, J.1    Taylor, R.D.2    Essex, J.W.3
  • 67
    • 5444263980 scopus 로고    scopus 로고
    • The parameterization and validation of Generalized Born models using the pairwise descreening approximation
    • Michel, J.; Taylor, R. D.; Essex, J. W. The parameterization and validation of Generalized Born models using the pairwise descreening approximation. J. Comput. Chem. 2004, 25, 1760-1770.
    • (2004) J. Comput. Chem , vol.25 , pp. 1760-1770
    • Michel, J.1    Taylor, R.D.2    Essex, J.W.3
  • 68
    • 0037244752 scopus 로고    scopus 로고
    • Advances in the science of estrogen receptor modulation
    • Meegan, M. J.; Lloyd, D. G. Advances in the science of estrogen receptor modulation. Curr. Med. Chem. 2003, 10, 181-210.
    • (2003) Curr. Med. Chem , vol.10 , pp. 181-210
    • Meegan, M.J.1    Lloyd, D.G.2
  • 70
    • 0001440875 scopus 로고    scopus 로고
    • Density functional solvation model based on CM2 atomic charges
    • Zhu, T. H.; Li, J. B.; Hawkins, G. D.; Cramer, C. J.; Truhlar, D. G. Density functional solvation model based on CM2 atomic charges. J. Chem. Phys. 1998, 109, 9117-9133.
    • (1998) J. Chem. Phys , vol.109 , pp. 9117-9133
    • Zhu, T.H.1    Li, J.B.2    Hawkins, G.D.3    Cramer, C.J.4    Truhlar, D.G.5
  • 71
    • 36049017659 scopus 로고    scopus 로고
    • Confine-and-Release Method: Obtaining Correct Binding Free Energies in the Presence of Protein Conformational Change
    • Mobley, D. L.; Chodera, J. D.; Dill, K. A. Confine-and-Release Method: Obtaining Correct Binding Free Energies in the Presence of Protein Conformational Change. J. Chem. Theory Comput. 2007, 3, 1231-1235.
    • (2007) J. Chem. Theory Comput , vol.3 , pp. 1231-1235
    • Mobley, D.L.1    Chodera, J.D.2    Dill, K.A.3


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