메뉴 건너뛰기




Volumn 2, Issue 5, 2007, Pages

Whole-genome sequencing and assembly with high-throughput, short-read technologies

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ANALYTICAL ERROR; ARTICLE; CHROMOSOME 1; CHROMOSOME 11; CHROMOSOME 21; CONTROLLED STUDY; DROSOPHILA MELANOGASTER; GENE LIBRARY; GENOME ANALYSIS; GENOME SIZE; HIGH THROUGHPUT SCREENING; HUMAN; MOLECULAR CLONING; NONHUMAN; SEQUENCE ANALYSIS; SHORT READ ASSEMBLY PROTOCOL; SIMULATION; ALGORITHM; ANIMAL; CHROMOSOME MAP; DNA SEQUENCE; GENETICS; HUMAN GENOME;

EID: 56149112104     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0000484     Document Type: Article
Times cited : (99)

References (35)
  • 1
    • 0019162146 scopus 로고
    • Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing
    • Sanger F, Coulson AR, Barrell BG, Smith AJ, Roe BA (1980) Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing. J Mol Biol 143: 161-178.
    • (1980) J Mol Biol , vol.143 , pp. 161-178
    • Sanger, F.1    Coulson, A.R.2    Barrell, B.G.3    Smith, A.J.4    Roe, B.A.5
  • 4
    • 0025344377 scopus 로고
    • Analysis of the protein-coding content of the sequence of human cytomegalovirus strain AD169
    • Chee MS, Bankier AT, Beck S, Bohni R, Brown CM, et al. (1990) Analysis of the protein-coding content of the sequence of human cytomegalovirus strain AD169. Curr Top Microbiol Immunol 154: 125-169.
    • (1990) Curr Top Microbiol Immunol , vol.154 , pp. 125-169
    • Chee, M.S.1    Bankier, A.T.2    Beck, S.3    Bohni, R.4    Brown, C.M.5
  • 7
    • 0028987725 scopus 로고
    • Pairwise end sequencing: A unified approach to genomic mapping and sequencing
    • Roach JC, Boysen C, Wang K, Hood L (1995) Pairwise end sequencing: a unified approach to genomic mapping and sequencing. Genomics 26: 345-353.
    • (1995) Genomics , vol.26 , pp. 345-353
    • Roach, J.C.1    Boysen, C.2    Wang, K.3    Hood, L.4
  • 8
    • 0030950735 scopus 로고    scopus 로고
    • Human whole-genome shotgun sequencing
    • Weber JL, Myers EW (1997) Human whole-genome shotgun sequencing. Genome Res 7: 401-409.
    • (1997) Genome Res , vol.7 , pp. 401-409
    • Weber, J.L.1    Myers, E.W.2
  • 9
    • 0034665605 scopus 로고    scopus 로고
    • Modeling the feasibility of whole genome shotgun sequencing using a pairwise end strategy
    • Siegel AF, van den Engh G, Hood L, Trask B, Roach JC (2000) Modeling the feasibility of whole genome shotgun sequencing using a pairwise end strategy. Genomics 68: 237-246.
    • (2000) Genomics , vol.68 , pp. 237-246
    • Siegel, A.F.1    van den Engh, G.2    Hood, L.3    Trask, B.4    Roach, J.C.5
  • 10
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
    • Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, et al. (1995) Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269: 496-512.
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1    Adams, M.D.2    White, O.3    Clayton, R.A.4    Kirkness, E.F.5
  • 13
  • 15
    • 0346505466 scopus 로고    scopus 로고
    • Hierarchical Scaffolding With Bambus
    • Pop M, Kosack DS, Salzberg SL (2004) Hierarchical Scaffolding With Bambus. Genome Res 14: 149-159.
    • (2004) Genome Res , vol.14 , pp. 149-159
    • Pop, M.1    Kosack, D.S.2    Salzberg, S.L.3
  • 19
    • 0032509302 scopus 로고    scopus 로고
    • C. elegans Sequencing Consortium (1998) Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 282: 2012-2018.
    • C. elegans Sequencing Consortium (1998) Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 282: 2012-2018.
  • 21
    • 0029955205 scopus 로고    scopus 로고
    • A new strategy for genome sequencing
    • Venter JC, Smith HO, Hood L (1996) A new strategy for genome sequencing. Nature 381: 364-366.
    • (1996) Nature , vol.381 , pp. 364-366
    • Venter, J.C.1    Smith, H.O.2    Hood, L.3
  • 22
    • 0033452647 scopus 로고    scopus 로고
    • Sequencing a genome by walking with clone-end sequences: A mathematical analysis
    • Batzoglou S, Berger B, Mesirov J, Lander ES (1999) Sequencing a genome by walking with clone-end sequences: a mathematical analysis. Genome Res 9: 1163-1174.
    • (1999) Genome Res , vol.9 , pp. 1163-1174
    • Batzoglou, S.1    Berger, B.2    Mesirov, J.3    Lander, E.S.4
  • 23
    • 0033852257 scopus 로고    scopus 로고
    • Parking strategies for genome sequencing
    • Roach JC, Thorsson V, Siegel AF (2000) Parking strategies for genome sequencing. Genome Res 10: 1020-1030.
    • (2000) Genome Res , vol.10 , pp. 1020-1030
    • Roach, J.C.1    Thorsson, V.2    Siegel, A.F.3
  • 24
    • 1842684068 scopus 로고    scopus 로고
    • Genome sequence of the brown Norway rat yields insights into mammalian evolution
    • Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, et al. (2004) Genome sequence of the brown Norway rat yields insights into mammalian evolution. Nature 428: 493-521.
    • (2004) Nature , vol.428 , pp. 493-521
    • Gibbs, R.A.1    Weinstock, G.M.2    Metzker, M.L.3    Muzny, D.M.4    Sodergren, E.J.5
  • 26
    • 25144471241 scopus 로고    scopus 로고
    • Genomics: Massively parallel sequencing
    • Rogers YH, Venter JC (2005) Genomics: massively parallel sequencing. Nature 437: 326-327.
    • (2005) Nature , vol.437 , pp. 326-327
    • Rogers, Y.H.1    Venter, J.C.2
  • 27
    • 24644462173 scopus 로고    scopus 로고
    • Accurate multiplex polony sequencing of an evolved bacterial genome
    • Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, et al. (2005) Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309: 1728-1732.
    • (2005) Science , vol.309 , pp. 1728-1732
    • Shendure, J.1    Porreca, G.J.2    Reppas, N.B.3    Lin, X.4    McCutcheon, J.P.5
  • 28
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3    Attiya, S.4    Bader, J.S.5
  • 29
  • 33
    • 0033081736 scopus 로고    scopus 로고
    • Analyses of secondary structures in DNA by pyrosequencing
    • Ronaghi M, Nygren M, Lundeberg J, Nyren P (1999) Analyses of secondary structures in DNA by pyrosequencing. Anal Biochem 267: 65-71.
    • (1999) Anal Biochem , vol.267 , pp. 65-71
    • Ronaghi, M.1    Nygren, M.2    Lundeberg, J.3    Nyren, P.4
  • 34
    • 0141519284 scopus 로고    scopus 로고
    • Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly
    • Zhou S, Kvikstad E, Kile A, Severin J, Forrest D, et al. (2003) Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly. Genome Res 13: 2142-2151.
    • (2003) Genome Res , vol.13 , pp. 2142-2151
    • Zhou, S.1    Kvikstad, E.2    Kile, A.3    Severin, J.4    Forrest, D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.