Analyses of secondary structures in DNA by pyrosequencing

Analytical Biochemistry

Volumn 267, Issue 1, 1999, Pages 65-71

  Ronaghi, Mostafa ^a   Nygren, Malin ^a   Lundeberg, Joakim ^a   Nyrén, Pål ^a  

^a ROYAL INSTITUTE OF TECHNOLOGY   (Sweden)

Author keywords

Apyrase; Bioassay; Compression; DNA sequencing; Inorganic pyrophosphate; Nucleic acids; Nucleotide degradation; Pyrosequencing; Secondary structures

Indexed keywords

BIOASSAY; COMPACTION; DNA; DNA SEQUENCES; ELECTROPHORESIS; NUCLEIC ACIDS;

APYRASE; DNA SEQUENCING; INORGANIC PYROPHOSPHATE; PYROSEQUENCING; SECONDARY STRUCTURES;

GENE ENCODING;

DNA FRAGMENT; DNA POLYMERASE; PALINDROMIC DNA; PYROPHOSPHATE;

ARTICLE; BORDETELLA; DNA DETERMINATION; DNA SEQUENCE; GEL ELECTROPHORESIS; NONHUMAN; NUCLEOTIDE METABOLISM; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN SECONDARY STRUCTURE;

BORDETELLA;

EID: 0033081736     PISSN: 00032697     EISSN: None     Source Type: Journal    
DOI: 10.1006/abio.1998.2978     Document Type: Article

References (31)

1. Sanger F., Nicklen S., Coulson A. R. Proc. Natl. Acad. Sci. USA. 74:1977;5463-5467.
2. Yamakawa H., Nakajima D., Ohara O. DNA Res. 3:1996;81-86.
3. Odagiri T. Virus Genes. 8:1994;271-274.
4. Yoshizawa S., Kawai G., Watanabe K., Miura K., Hirao I. Biochemistry. 36:1997;4761-4767.
5. Hald M., Pedersen J. B., Stein P. C., Kirpekar F., Jacobsen J. P. Nucleic Acids Res. 23:1995;4576-4582.
6. Muller U. R., Fitch W. M. Nature. 298:1982;582-585.
7. Yoshizawa S., Ueda T., Ishido Y., Miura K., Watanabe K., Hirao I. Nucleic Acids Res. 22:1994;2217-2221.
8. Kirpekar F., Nordhoff E., Larsen L. K., Kristiansen K., Roepstorff P., Hillenkamp F. Nucleic Acids Res. 26:1998;2554-2559.
9. McCrea K. W., Marrs C. F., Gilsdorf J. R. Biotechniques. 15:1993;843-844.
10. Hawkins T. L., Sulston J. E. Nucleic Acids Res. 19:1991;2784.
11. Ambartsumyan N. S., Mazo A. M. FEBS Lett. 114:1980;265-268.
12. Jensen M. A., Zagursky R. J., Trainor G. L., Cocuzza A. J., Lee A., Chen E. Y. DNA Seq. 1:1991;233-239.
13. Li S., Haces A., Stupar L., Gebeyehu G., Pless R. C. Nucleic Acids Res. 21:1993;2709-2714.
14. Beck K. F., Stathopulos I., Berninger M. G., Schweizer M. Biotechniques. 14:1993;375.
15. Mizusawa S., Nishimura S., Seela F. Nucleic Acids Res. 14:1986;1319-1324.
16. Seto D., Seto J., Deshpande P., Hood L. DNA Seq. 5:1995;131-140.
17. Sanger F., Coulson A. R., Hong G. F., Hill D. F., Petersen G. B. J. Mol. Biol. 162:1982;729-773.
18. Yamakawa H., Ohara O. Nucleic Acids Res. 25:1997;1311-1312.
19. Ronaghi M., Uhlén M., Nyrén P. Science. 281:1998;363-365.
20. Stark M., Reizenstein E., Uhlen M., Lundeberg J. J. Clin. Microbiol. 34:1996;778-784.
21. Hultman T., Bergh S., Moks T., Uhlen M. Biotechniques. 10:1991;84-93.
22. Kristensen T., Voss H., Schwager C., Stegemann J., Sproat B., Ansorge W. Nucleic Acids Res. 16:1988;3487-3496.
23. Parker L. T., Zakeri H., Deng Q., Spurgeon S., Kwok P. Y., Nickerson D. A. Biotechniques. 21:1996;694-699.
24. Murray V. Nucleic Acids Res. 17:1989;8889.
25. Blanco L., Salas M. Methods Enzymol. 262:1995;283-294.
26. Fujimura R. K., Roop B. C. J. Biol. Chem. 251:1976;2168-2174.
27. Tanikawa J., Nishimura Y., Hirao I., Miura K. Nucleic Acids Symp. Ser. 1991;47-48.
28. Sandusky P., Wooten E. W., Kurochkin A. V., Kavanaugh T., Mandecki W., Zuiderweg E. R. Nucleic Acids Res. 23:1995;4717-4725.
29. Hirao I., Nishimura Y., Tagawa Y., Watanabe K., Miura K. Nucleic Acids Res. 20:1992;3891-3896.
30. Antao V. P., Tinoco I. J. Nucleic Acids Res. 20:1992;819-824.
31. Tuerk C., Gold L. Science. 249:1990;505-510.