Modeling and base-calling for DNA sequencing-by-synthesis

ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings

Volumn 2, Issue , 2006, Pages

  Eltoukhy, Helmy ^a   El Gamal, Abbas ^a  

^a Stanford University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BASE-CALLING PROBLEM; PYROSEQUENCING DATA; SEQUENCING-BY-SYNTHESIS;

COMPUTATION THEORY; COMPUTER SIMULATION; MAXIMUM LIKELIHOOD; PARAMETER ESTIMATION; PROBLEM SOLVING;

DNA SEQUENCES;

EID: 33947631879     PISSN: 15206149     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (6)

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2. B. Ewing, P. Green, "Basecalling of automated sequencer traces using phred. II. Error probabilities," Genome Research 8, pp. 186-194, 1998.
3. B. Gharizadeh, T. Nordstrom, A. Ahmadian, M. Ronaghi, and P. Nyren, "Long read Pyrosequencing using pure 2'-deoxyadenosine-5'-0'-(1- thiotriphosphate) Spisomer," Analytical Biochemistry, vol. 301, pp. 82-90, 2002.
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5. J. Hagenauer, P. Hoeher, "A Viterbi Algorithm With Soft Decision Outputs and Its Applications," Proceedings of IEEE GLOBECOM, pp. 47.1.1-47.1.6., November 1989.
6. N. Seshadri, C-E.W. Sundberg, "List Viterbi Decoding Algorithms with Applications," IEEE Transactions on Communications, vol. 42, no. 2/3/4, pp. 313-323, 1994.