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Volumn 180, Issue 1, 2008, Pages 329-340

Multilocus patterns of nucleotide polymorphism and the demographic history of Populus tremula

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SUBSTITUTION; ARTICLE; ASPEN; BAYES THEOREM; BOTTLENECK POPULATION; CONTROLLED STUDY; DNA POLYMORPHISM; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENE MUTATION; GENETIC SELECTION; NONHUMAN; POPULATION SIZE; POPULUS TREMULA; PRIORITY JOURNAL; BIOLOGICAL MODEL; BIOLOGY; COMPUTER PROGRAM; GENE; GENE DELETION; GENE FREQUENCY; GENETIC POLYMORPHISM; GENETICS; METABOLISM; MUTATION; POPULATION GENETICS; STATISTICAL MODEL;

EID: 56049099553     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.108.090431     Document Type: Article
Times cited : (152)

References (80)
  • 1
    • 0345730813 scopus 로고    scopus 로고
    • Effect of misoriented sites on neutrality tests with outgroup
    • BAUDRY, E., and F. DEPAULIS, 2003 Effect of misoriented sites on neutrality tests with outgroup. Genetics 165: 1619-1622.
    • (2003) Genetics , vol.165 , pp. 1619-1622
    • BAUDRY, E.1    DEPAULIS, F.2
  • 2
    • 58149282899 scopus 로고    scopus 로고
    • Joint determination of topology, divergence time and immigration in population trees
    • edited by S. MATSUMURA, P. FORSTER and C. RENFREW. McDonald Institute for Archaelogical Research, Cambridge, UK in press
    • BEAUMONT, M. A., 2008 Joint determination of topology, divergence time and immigration in population trees, in Simulations, Genetics and Human Prehistory (McDonald Institute Monographs), edited by S. MATSUMURA, P. FORSTER and C. RENFREW. McDonald Institute for Archaelogical Research, Cambridge, UK (in press).
    • (2008) Simulations, Genetics and Human Prehistory (McDonald Institute Monographs)
    • BEAUMONT, M.A.1
  • 3
    • 0036964474 scopus 로고    scopus 로고
    • Approximate Bayesian computation in population genetics
    • BEAUMONT, M. A., W. ZHANG and D. J. BALDING, 2002 Approximate Bayesian computation in population genetics. Genetics 162: 2025-2035.
    • (2002) Genetics , vol.162 , pp. 2025-2035
    • BEAUMONT, M.A.1    ZHANG, W.2    BALDING, D.J.3
  • 5
    • 34848916049 scopus 로고    scopus 로고
    • CAICEDO, A. L., S. H. WILLIAMSON, R. D. HERNANDEZ, A. BOYKO, A. FLEDEL-ALON et al., 2007 Genome-wide patterns of nucleotide polymorphism in domesticated rice. PLoS Genet. 3: e163.
    • CAICEDO, A. L., S. H. WILLIAMSON, R. D. HERNANDEZ, A. BOYKO, A. FLEDEL-ALON et al., 2007 Genome-wide patterns of nucleotide polymorphism in domesticated rice. PLoS Genet. 3: e163.
  • 6
    • 0031450133 scopus 로고    scopus 로고
    • The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations
    • CHARLESWORTH, B., M. NORDBORG and D. CHARLESWORTH, 1997 The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations. Genet. Res. 70: 155-174.
    • (1997) Genet. Res , vol.70 , pp. 155-174
    • CHARLESWORTH, B.1    NORDBORG, M.2    CHARLESWORTH, D.3
  • 7
    • 0842279814 scopus 로고    scopus 로고
    • The effects of genetic and geographic structure on neutral variation
    • CHARLESWORTH, B., D. CHARLESWORTH and N. H. BARTON, 2003 The effects of genetic and geographic structure on neutral variation. Annu. Rev. Ecol. Syst. 34: 99-125.
    • (2003) Annu. Rev. Ecol. Syst , vol.34 , pp. 99-125
    • CHARLESWORTH, B.1    CHARLESWORTH, D.2    BARTON, N.H.3
  • 8
    • 0031741723 scopus 로고    scopus 로고
    • The effect of Quaternary climatic changes on plant distributions and evolution
    • COMES, H. P., and J. W. KADEREIT, 1998 The effect of Quaternary climatic changes on plant distributions and evolution. Trends Plant Sci. 3: 432-438.
    • (1998) Trends Plant Sci , vol.3 , pp. 432-438
    • COMES, H.P.1    KADEREIT, J.W.2
  • 9
    • 0002026820 scopus 로고    scopus 로고
    • Systematics and evolution of Populus
    • edited by R. F. STETTLER, H. D. BRADSHAW, P. E. HEILMAN and T. M. HINCKLEY. NRC Research Press, Ottawa, ON, Canada
    • ECKENWALDER, J. E., 1996 Systematics and evolution of Populus, pp. 7-32 in. Biology of Populus and Its Implications for Management and Conservation, edited by R. F. STETTLER, H. D. BRADSHAW, P. E. HEILMAN and T. M. HINCKLEY. NRC Research Press, Ottawa, ON, Canada.
    • (1996) Biology of Populus and Its Implications for Management and Conservation , pp. 7-32
    • ECKENWALDER, J.E.1
  • 10
    • 0031955518 scopus 로고    scopus 로고
    • Basecalling of automated sequencer traces using Phred. I. Accuracy assessment
    • EWING, B., L. HILLIER, M. WENDL and P. GREEN, 1998 Basecalling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res. 8: 175-185.
    • (1998) Genome Res , vol.8 , pp. 175-185
    • EWING, B.1    HILLIER, L.2    WENDL, M.3    GREEN, P.4
  • 12
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive Darwinian selection
    • FAY, J., and C.-I. WU, 2000 Hitchhiking under positive Darwinian selection. Genetics 155: 1405-1413.
    • (2000) Genetics , vol.155 , pp. 1405-1413
    • FAY, J.1    WU, C.-I.2
  • 15
    • 33645219360 scopus 로고    scopus 로고
    • DNA sequence variation and selection of tag single-nucleotide polymorphisms at candidate genes for drought-stress response in Pinus taeda L
    • GONZALEZ-MARTINEZ, S. C., E. ERSOZ, G. R. BROWN, N. C. WHEELER and D. B. NEALE, 2006 DNA sequence variation and selection of tag single-nucleotide polymorphisms at candidate genes for drought-stress response in Pinus taeda L. Genetics 172: 1915-1926.
    • (2006) Genetics , vol.172 , pp. 1915-1926
    • GONZALEZ-MARTINEZ, S.C.1    ERSOZ, E.2    BROWN, G.R.3    WHEELER, N.C.4    NEALE, D.B.5
  • 16
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • GORDON, D., C. ABAJIAN and P. GREEN, 1998 Consed: a graphical tool for sequence finishing. Genome Res. 8: 195-202.
    • (1998) Genome Res , vol.8 , pp. 195-202
    • GORDON, D.1    ABAJIAN, C.2    GREEN, P.3
  • 17
    • 22344444998 scopus 로고    scopus 로고
    • Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations
    • HADDRILL, P. R., K. R. THORNTON, B. CHARLESWORTH and P. ANDOLFATTO, 2005 Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations. Genome Res. 15: 790-799.
    • (2005) Genome Res , vol.15 , pp. 790-799
    • HADDRILL, P.R.1    THORNTON, K.R.2    CHARLESWORTH, B.3    ANDOLFATTO, P.4
  • 18
    • 39749133684 scopus 로고    scopus 로고
    • Toward a selection theory of molecular evolution
    • HAHN, M. W., 2008 Toward a selection theory of molecular evolution. Evolution 62: 255-265.
    • (2008) Evolution , vol.62 , pp. 255-265
    • HAHN, M.W.1
  • 19
    • 36549060068 scopus 로고    scopus 로고
    • Adaptive population differentiation in phenology across a latitudinal gradient in European aspen (Populus tremula, L.): A comparison of neutral markers, candidate genes and phenotypic traits
    • HALL, D., V. LUQUEZ, M. V. GARCIA, K. R. ST. ONGE, S. JANSSON et al., 2007 Adaptive population differentiation in phenology across a latitudinal gradient in European aspen (Populus tremula, L.): a comparison of neutral markers, candidate genes and phenotypic traits. Evolution 61: 2849-2860.
    • (2007) Evolution , vol.61 , pp. 2849-2860
    • HALL, D.1    LUQUEZ, V.2    GARCIA, M.V.3    ST. ONGE, K.R.4    JANSSON, S.5
  • 20
    • 1242296827 scopus 로고    scopus 로고
    • Patterns of evolutionary constraints in intronic and intergenic DNA of drosophila
    • HALLIGAN, D. L., A. EYRE-WALKER, P. ANDOLFATTO and P. D. KEIGHTLEY, 2004 Patterns of evolutionary constraints in intronic and intergenic DNA of drosophila. Genome Res. 14: 273-279.
    • (2004) Genome Res , vol.14 , pp. 273-279
    • HALLIGAN, D.L.1    EYRE-WALKER, A.2    ANDOLFATTO, P.3    KEIGHTLEY, P.D.4
  • 21
    • 32544443264 scopus 로고    scopus 로고
    • Equilibrium processes cannot explain high levels of short- and medium-range linkage disequilibrium in the domesticated grass Sorghum bicolor
    • HAMBLIN, M. T., M. G. FERNANDEZ, A. M. CASA, S. E. MITCHELL, A. H. PATERSON et al., 2005 Equilibrium processes cannot explain high levels of short- and medium-range linkage disequilibrium in the domesticated grass Sorghum bicolor. Genetics 171: 1247-1256.
    • (2005) Genetics , vol.171 , pp. 1247-1256
    • HAMBLIN, M.T.1    FERNANDEZ, M.G.2    CASA, A.M.3    MITCHELL, S.E.4    PATERSON, A.H.5
  • 22
    • 33745423085 scopus 로고    scopus 로고
    • Challenges of detecting directional selection after a bottleneck: Lessons from Sorghum bicolor
    • HAMBLIN, M. T., A. M. CASA, H. SUN, S. C. MURRAY, A. H. PATERSON et al., 2006 Challenges of detecting directional selection after a bottleneck: lessons from Sorghum bicolor. Genetics 173: 953-964.
    • (2006) Genetics , vol.173 , pp. 953-964
    • HAMBLIN, M.T.1    CASA, A.M.2    SUN, H.3    MURRAY, S.C.4    PATERSON, A.H.5
  • 23
    • 33845746244 scopus 로고    scopus 로고
    • Multilocus patterns of nucleotide diversity, linkage disequilibrium and demographic history of Norway spruce [Picea abies (L.) Karst]
    • HEUERTZ, M., E. DE PAOLI, T. KALLMAN, H. LARSSON, I. JURMAN et al., 2006 Multilocus patterns of nucleotide diversity, linkage disequilibrium and demographic history of Norway spruce [Picea abies (L.) Karst]. Genetics 174: 2095-2105.
    • (2006) Genetics , vol.174 , pp. 2095-2105
    • HEUERTZ, M.1    DE PAOLI, E.2    KALLMAN, T.3    LARSSON, H.4    JURMAN, I.5
  • 24
    • 1242299019 scopus 로고    scopus 로고
    • Genetic consequences of climatic oscillations in the Quaternary
    • HEWITT, G. M., 2004 Genetic consequences of climatic oscillations in the Quaternary. Philos. Trans. R. Soc. Lond. B359: 183-195.
    • (2004) Philos. Trans. R. Soc. Lond , vol.B359 , pp. 183-195
    • HEWITT, G.M.1
  • 25
    • 0001935493 scopus 로고
    • Gene genealogies and the coalescent process
    • edited by D. J. FUTUYMA and J. ANTONOVICS. Oxford University Press, Oxford
    • HUDSON, R. R., 1990 Gene genealogies and the coalescent process, pp. 1-44 in Oxford Surveys in Evolutionary Biology, Vol. 7, edited by D. J. FUTUYMA and J. ANTONOVICS. Oxford University Press, Oxford.
    • (1990) Oxford Surveys in Evolutionary Biology , vol.7 , pp. 1-44
    • HUDSON, R.R.1
  • 26
    • 0035692320 scopus 로고    scopus 로고
    • Two-locus sampling distributions and their application
    • HUDSON, R. R., 2001 Two-locus sampling distributions and their application. Genetics 159: 1805-1817.
    • (2001) Genetics , vol.159 , pp. 1805-1817
    • HUDSON, R.R.1
  • 27
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • HUDSON, R. R., 2002 Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18: 337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • HUDSON, R.R.1
  • 28
    • 23944437693 scopus 로고    scopus 로고
    • Molecular population genetics of herbivore-induced protease inhibitor genes in European aspen (Populus tremula L., Salicaceae)
    • INGVARSSON, P. K., 2005a Molecular population genetics of herbivore-induced protease inhibitor genes in European aspen (Populus tremula L., Salicaceae). Mol. Biol. Evol. 22: 1802-1812.
    • (2005) Mol. Biol. Evol , vol.22 , pp. 1802-1812
    • INGVARSSON, P.K.1
  • 29
    • 15544362769 scopus 로고    scopus 로고
    • Nucleotide polymorphism and linkage disequilbrium within and among natural populations of European aspen (Populus tremula L., Salicaceae)
    • INGVARSSON, P. K., 2005b Nucleotide polymorphism and linkage disequilbrium within and among natural populations of European aspen (Populus tremula L., Salicaceae). Genetics 169: 945-953.
    • (2005) Genetics , vol.169 , pp. 945-953
    • INGVARSSON, P.K.1
  • 30
    • 33847686233 scopus 로고    scopus 로고
    • Gene expression and protein length influence codon usage and rates of sequence evolution in Populus tremula
    • INGVARSSON, P. K., 2007 Gene expression and protein length influence codon usage and rates of sequence evolution in Populus tremula. Mol. Biol. Evol. 24: 836-844.
    • (2007) Mol. Biol. Evol , vol.24 , pp. 836-844
    • INGVARSSON, P.K.1
  • 31
    • 0041817580 scopus 로고    scopus 로고
    • DNA variation in a conifer, Cryptomeria japonica (Cupressaceae sensu lato)
    • KADO, T., H. YOSHIMARU, Y. TSUMURA and H. TACHIDA, 2003 DNA variation in a conifer, Cryptomeria japonica (Cupressaceae sensu lato). Genetics 164: 1547-1559.
    • (2003) Genetics , vol.164 , pp. 1547-1559
    • KADO, T.1    YOSHIMARU, H.2    TSUMURA, Y.3    TACHIDA, H.4
  • 32
    • 0024372736 scopus 로고
    • The "hitch-hiking" effect revisited
    • KAPLAN, N. L., R. R. HUDSON and C. F. LANGLEY, 1989 The "hitch-hiking" effect revisited. Genetics 123: 887-899.
    • (1989) Genetics , vol.123 , pp. 887-899
    • KAPLAN, N.L.1    HUDSON, R.R.2    LANGLEY, C.F.3
  • 33
    • 0030873114 scopus 로고    scopus 로고
    • A test of neutrality based on interlocus associations
    • KELLY, J. K., 1997 A test of neutrality based on interlocus associations. Genetics 146: 1197-1206.
    • (1997) Genetics , vol.146 , pp. 1197-1206
    • KELLY, J.K.1
  • 34
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - the BLAST-like alignment tool
    • KENT, W. J., 2002 BLAT - the BLAST-like alignment tool. Genome Res. 12: 656-664.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • KENT, W.J.1
  • 36
    • 0033804889 scopus 로고    scopus 로고
    • Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)
    • KOCH, M. A., B. HAUBOLD and T. MITCHELL- OLDS, 2000 Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae). Mol. Biol. Evol. 17: 1483-1498.
    • (2000) Mol. Biol. Evol , vol.17 , pp. 1483-1498
    • KOCH, M.A.1    HAUBOLD, B.2    MITCHELL- OLDS, T.3
  • 37
    • 35048890118 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms and linkage disequilibrium in sunflower
    • KOLKMAN, J. M., S. T. BERRY, A. J. LEON, M. B. SLABAUGH, S. TANG et al., 2007 Single nucleotide polymorphisms and linkage disequilibrium in sunflower. Genetics 177: 457-468.
    • (2007) Genetics , vol.177 , pp. 457-468
    • KOLKMAN, J.M.1    BERRY, S.T.2    LEON, A.J.3    SLABAUGH, M.B.4    TANG, S.5
  • 38
    • 33645130943 scopus 로고    scopus 로고
    • Nucleotide diversity and linkage disequilibrium in cold-hardiness- and wood quality-related candidate genes in Douglas fir
    • KRUTOVSKY, K. V., and D. B. NEALE, 2005 Nucleotide diversity and linkage disequilibrium in cold-hardiness- and wood quality-related candidate genes in Douglas fir. Genetics 171: 2029-2041.
    • (2005) Genetics , vol.171 , pp. 2029-2041
    • KRUTOVSKY, K.V.1    NEALE, D.B.2
  • 39
    • 16344396105 scopus 로고    scopus 로고
    • LEXER, C., M. F. FAY, J. A. JOSEPH, M.-S. NICA and B. HEINZE, 2005 Barrier to gene flow between two ecologically divergent Populus species, P. alba (White Poplar) and P. tremula (European Aspen): the role of ecology and life history in gene introgression. Mol. Ecol. 14: 1045-1057.
    • LEXER, C., M. F. FAY, J. A. JOSEPH, M.-S. NICA and B. HEINZE, 2005 Barrier to gene flow between two ecologically divergent Populus species, P. alba (White Poplar) and P. tremula (European Aspen): the role of ecology and life history in gene introgression. Mol. Ecol. 14: 1045-1057.
  • 40
    • 33744502414 scopus 로고    scopus 로고
    • Patterns of nucleotide diversity in wild and cultivated sunflower
    • LIU, A. Z., and J. M. BURKE, 2006 Patterns of nucleotide diversity in wild and cultivated sunflower. Genetics 173: 321-330.
    • (2006) Genetics , vol.173 , pp. 321-330
    • LIU, A.Z.1    BURKE, J.M.2
  • 42
    • 38949171308 scopus 로고    scopus 로고
    • Natural phenological variation in aspen (Populus tremula): The Swedish Aspen Collection
    • LUQUEZ, V., D. HALL, B. ALBRECTSEN, J. KARLSSON, P. K. INGVARSSON et al., 2008 Natural phenological variation in aspen (Populus tremula): the Swedish Aspen Collection. Tree Genet. Genomes 4: 279-292.
    • (2008) Tree Genet. Genomes , vol.4 , pp. 279-292
    • LUQUEZ, V.1    HALL, D.2    ALBRECTSEN, B.3    KARLSSON, J.4    INGVARSSON, P.K.5
  • 43
    • 41149124114 scopus 로고    scopus 로고
    • Population, quantitative and comparative genomics of adaptation in forest trees
    • NEALE, D. B., and P. K. INGVARSSON, 2008 Population, quantitative and comparative genomics of adaptation in forest trees. Curr. Opin. Plant Biol. 11: 149-155.
    • (2008) Curr. Opin. Plant Biol , vol.11 , pp. 149-155
    • NEALE, D.B.1    INGVARSSON, P.K.2
  • 44
    • 3042745450 scopus 로고    scopus 로고
    • Association genetics of complex traits in conifers
    • NEALE, D. B., and O. SAVOLAINEN, 2004 Association genetics of complex traits in conifers. Trends Plant Sci. 9: 325-330.
    • (2004) Trends Plant Sci , vol.9 , pp. 325-330
    • NEALE, D.B.1    SAVOLAINEN, O.2
  • 45
    • 0030872838 scopus 로고    scopus 로고
    • Polyphred: Automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing
    • NICKERSON, D. A., V. O. TOBE and S. TAYLOR, 1997 Polyphred: automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing. Nucleic Acids Res. 25: 2745-2751.
    • (1997) Nucleic Acids Res , vol.25 , pp. 2745-2751
    • NICKERSON, D.A.1    TOBE, V.O.2    TAYLOR, S.3
  • 46
    • 0034809334 scopus 로고    scopus 로고
    • Statistical tests of selective neutrality in the age of genomics
    • NIELSEN, R., 2001 Statistical tests of selective neutrality in the age of genomics. Heredity 86: 641-647.
    • (2001) Heredity , vol.86 , pp. 641-647
    • NIELSEN, R.1
  • 47
    • 0000913208 scopus 로고    scopus 로고
    • Coalescent theory
    • edited by D. J. BALDING, M. BISHOP and C. CANNINGS. Wiley, Chichester, UK
    • NORDBORG, M., 2001 Coalescent theory, pp. 179-212 in Handbook of Statistical Genetics, edited by D. J. BALDING, M. BISHOP and C. CANNINGS. Wiley, Chichester, UK.
    • (2001) Handbook of Statistical Genetics , pp. 179-212
    • NORDBORG, M.1
  • 50
    • 24744465216 scopus 로고    scopus 로고
    • Inferring the effects of demography and selection on Drosophila melanogaster populations from a chromosome-wide scan of DNA variation
    • OMETTO, L., S. GLINKA, D. DE LORENZO and W. STEPHAN, 2005 Inferring the effects of demography and selection on Drosophila melanogaster populations from a chromosome-wide scan of DNA variation. Mol. Biol. Evol. 22: 2119-2130.
    • (2005) Mol. Biol. Evol , vol.22 , pp. 2119-2130
    • OMETTO, L.1    GLINKA, S.2    DE LORENZO, D.3    STEPHAN, W.4
  • 51
    • 0037567252 scopus 로고    scopus 로고
    • Glacial refugia: Hotspots but not melting pots of genetic diversity
    • PETIT, R. J., I. AGUINAGALDE, J.-L. DE BEAULIEU, C. BITTKAU, S. BREWER et al., 2003 Glacial refugia: hotspots but not melting pots of genetic diversity. Science 300: 1563-1565.
    • (2003) Science , vol.300 , pp. 1563-1565
    • PETIT, R.J.1    AGUINAGALDE, I.2    DE BEAULIEU, J.-L.3    BITTKAU, C.4    BREWER, S.5
  • 52
    • 0032735986 scopus 로고    scopus 로고
    • Population growth of human Y chromosomes: A study of Y chromosome microsatellites
    • PRITCHARD, J., M. SEIELSTAD, A. PEREZ- LEZAUN and M. FELDMAN, 1999 Population growth of human Y chromosomes: a study of Y chromosome microsatellites. Mol. Biol. Evol. 16: 1791-1798.
    • (1999) Mol. Biol. Evol , vol.16 , pp. 1791-1798
    • PRITCHARD, J.1    SEIELSTAD, M.2    PEREZ- LEZAUN, A.3    FELDMAN, M.4
  • 53
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • PRITCHARD, J. K., M. STEPHENS and P. DONNELLY, 2000 Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • PRITCHARD, J.K.1    STEPHENS, M.2    DONNELLY, P.3
  • 54
    • 0036196885 scopus 로고    scopus 로고
    • The signature of positive selection at randomly chosen loci
    • PRZEWORSKI, M., 2002 The signature of positive selection at randomly chosen loci. Genetics 160: 1179-1189.
    • (2002) Genetics , vol.160 , pp. 1179-1189
    • PRZEWORSKI, M.1
  • 55
    • 37249019973 scopus 로고    scopus 로고
    • Demographic history has influenced nucleotide diversity in European Pinus sylvestris populations
    • PYHÄJARVI, T., M. R. GARCIA-GIL, T. KNURR, M. MIKKONEN, W. WACHOWIAK et al., 2007 Demographic history has influenced nucleotide diversity in European Pinus sylvestris populations. Genetics 177: 1713-1724.
    • (2007) Genetics , vol.177 , pp. 1713-1724
    • PYHÄJARVI, T.1    GARCIA-GIL, M.R.2    KNURR, T.3    MIKKONEN, M.4    WACHOWIAK, W.5
  • 56
    • 35748932852 scopus 로고    scopus 로고
    • R DEVELOPMENT CORE TEAM, R Foundation for Statistical Computing, Vienna
    • R DEVELOPMENT CORE TEAM, 2007 R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna.
    • (2007) R: A Language and Environment for Statistical Computing
  • 57
    • 1642274061 scopus 로고    scopus 로고
    • Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A. lyrata
    • RAMOS-ONSINS, S. E., B. E. STRANGER, T. MITCHELL-OLDS and M. AGUADÉ, 2004 Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A. lyrata. Genetics 166: 373-388.
    • (2004) Genetics , vol.166 , pp. 373-388
    • RAMOS-ONSINS, S.E.1    STRANGER, B.E.2    MITCHELL-OLDS, T.3    AGUADÉ, M.4
  • 59
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • edited by S. KRAWETZ and S. MISENER. Humana Press, Totowa, NJ
    • ROZEN, S., and H. SKALETSKY, 2000 Primer3 on the WWW for general users and for biologist programmers, pp. 365-386 in Bioinformatics Methods and Protocols: Methods in Molecular Biology, edited by S. KRAWETZ and S. MISENER. Humana Press, Totowa, NJ.
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • ROZEN, S.1    SKALETSKY, H.2
  • 61
    • 17444402038 scopus 로고    scopus 로고
    • A multilocus survey in Arabidopsis thaliana reveals a genome-wide departure for a neutral model of DNA sequence polymorphism
    • SCHMID, K. J., S. RAMOS-ONSINS, H. RINGYS-BECKSTEIN, B. WEISSHAAR and T. MITCHELL-OLDS, 2005 A multilocus survey in Arabidopsis thaliana reveals a genome-wide departure for a neutral model of DNA sequence polymorphism. Genetics 169: 1601-1615.
    • (2005) Genetics , vol.169 , pp. 1601-1615
    • SCHMID, K.J.1    RAMOS-ONSINS, S.2    RINGYS-BECKSTEIN, H.3    WEISSHAAR, B.4    MITCHELL-OLDS, T.5
  • 63
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genome-wide studies
    • STOREY, J. D., and R. TIBSHIRANI, 2003 Statistical significance for genome-wide studies. Proc. Natl. Acad. Sci. USA 100: 9440-9445.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9440-9445
    • STOREY, J.D.1    TIBSHIRANI, R.2
  • 64
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • TAJIMA, F., 1983 Evolutionary relationship of DNA sequences in finite populations. Genetics 105: 437-460.
    • (1983) Genetics , vol.105 , pp. 437-460
    • TAJIMA, F.1
  • 65
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • TAJIMA, F., 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • TAJIMA, F.1
  • 66
    • 33745617693 scopus 로고    scopus 로고
    • Molecular evolution of a small gene family of wound inducable Kunitz trypsin inhibitors in Populus
    • TALYZINA, N. M., and P. K. INGVARSSON, 2006 Molecular evolution of a small gene family of wound inducable Kunitz trypsin inhibitors in Populus. J. Mol. Evol. 63: 108-119.
    • (2006) J. Mol. Evol , vol.63 , pp. 108-119
    • TALYZINA, N.M.1    INGVARSSON, P.K.2
  • 67
    • 3042595170 scopus 로고    scopus 로고
    • Selection versus demography: A multilocus investigation of the domestication process in maize
    • TENAILLON, M. I., J. U'REN, O. TENAILLON and B. S. GAUT, 2004 Selection versus demography: a multilocus investigation of the domestication process in maize. Mol. Biol. Evol. 21: 1214-1225.
    • (2004) Mol. Biol. Evol , vol.21 , pp. 1214-1225
    • TENAILLON, M.I.1    U'REN, J.2    TENAILLON, O.3    GAUT, B.S.4
  • 68
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position specific gap penalties and weight matrix choice
    • THOMPSON, J. D., D. G. HIGGINS and T. J. GIBSON, 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • THOMPSON, J.D.1    HIGGINS, D.G.2    GIBSON, T.J.3
  • 69
    • 0344464730 scopus 로고    scopus 로고
    • libsequence: A C++ class library for evolutionary genetic analysis
    • THORNTON, K., 2003 libsequence: a C++ class library for evolutionary genetic analysis. Bioinformatics 19: 2325-2327.
    • (2003) Bioinformatics , vol.19 , pp. 2325-2327
    • THORNTON, K.1
  • 70
    • 33644763127 scopus 로고    scopus 로고
    • Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster
    • THORNTON, K., and P. ANDOLFATTO, 2006 Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster. Genetics 172: 1607-1619.
    • (2006) Genetics , vol.172 , pp. 1607-1619
    • THORNTON, K.1    ANDOLFATTO, P.2
  • 71
    • 34249074492 scopus 로고    scopus 로고
    • Progress and prospects in mapping recent selection in the genome
    • THORNTON, K. R., J. D. JENSEN, C. BECQUET and P. ANDOLFATTO, 2007 Progress and prospects in mapping recent selection in the genome. Heredity 98: 340-348.
    • (2007) Heredity , vol.98 , pp. 340-348
    • THORNTON, K.R.1    JENSEN, J.D.2    BECQUET, C.3    ANDOLFATTO, P.4
  • 72
    • 33748760611 scopus 로고    scopus 로고
    • The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    • TUSKAN, G., S. DIFAZIO, S. JANSSON, J. BOHLMANN, I. GRIGORIEV et al., 2006 The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313: 1596-1604.
    • (2006) Science , vol.313 , pp. 1596-1604
    • TUSKAN, G.1    DIFAZIO, S.2    JANSSON, S.3    BOHLMANN, J.4    GRIGORIEV, I.5
  • 73
    • 33746913459 scopus 로고    scopus 로고
    • Analysis of 70000 EST sequences to study divergence between two closely related Populus species
    • UNNEBERG, P., M. STRÖMBERG, J. LUNDEBERG, S. JANSSON and F. STERKY, 2005 Analysis of 70000 EST sequences to study divergence between two closely related Populus species. Tree Genet. Genomes 1: 109-115.
    • (2005) Tree Genet. Genomes , vol.1 , pp. 109-115
    • UNNEBERG, P.1    STRÖMBERG, M.2    LUNDEBERG, J.3    JANSSON, S.4    STERKY, F.5
  • 74
    • 0032047371 scopus 로고    scopus 로고
    • Segregating sites in Wright's island model
    • WAKELEY, J., 1998 Segregating sites in Wright's island model. Theor. Popul. Biol. 53: 166-175.
    • (1998) Theor. Popul. Biol , vol.53 , pp. 166-175
    • WAKELEY, J.1
  • 75
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • WATTERSON, G. A., 1975 On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7: 256-276.
    • (1975) Theor. Popul. Biol , vol.7 , pp. 256-276
    • WATTERSON, G.A.1
  • 76
    • 0027011221 scopus 로고
    • Global changes during the last 3 million years: Climatic controls and biotic response
    • WEBB, I. I. I. T., and P. J. BARTLEIN, 1992 Global changes during the last 3 million years: climatic controls and biotic response. Annu. Rev. Ecol. Syst. 23: 141-173.
    • (1992) Annu. Rev. Ecol. Syst , vol.23 , pp. 141-173
    • WEBB, I.I.I.T.1    BARTLEIN, P.J.2
  • 77
    • 0036860637 scopus 로고    scopus 로고
    • Rapid and widespread vegetation responses to past climate change in the North Atlantic region
    • WILLIAMS, J. W., D. M. POST, L. C. CWYNAR, A. F. LOTTER and A. J. LEVESQUE, 2002 Rapid and widespread vegetation responses to past climate change in the North Atlantic region. Geology 30: 971-974.
    • (2002) Geology , vol.30 , pp. 971-974
    • WILLIAMS, J.W.1    POST, D.M.2    CWYNAR, L.C.3    LOTTER, A.F.4    LEVESQUE, A.J.5
  • 79
    • 33751342650 scopus 로고    scopus 로고
    • Statistical tests for detecting positive selection by utilizing high-frequency variants
    • ZENG, K., Y.-X. FU, S. SHI and C.-I. WU, 2006 Statistical tests for detecting positive selection by utilizing high-frequency variants. Genetics 174: 1431-1439.
    • (2006) Genetics , vol.174 , pp. 1431-1439
    • ZENG, K.1    FU, Y.-X.2    SHI, S.3    WU, C.-I.4
  • 80
    • 33847661877 scopus 로고    scopus 로고
    • Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: Severe bottleneck during domestication of rice
    • ZHU, Q. H., X. M. ZHENG, J. C. LUO, B. S. GAUT and S. GE, 2007 Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice. Mol. Biol. Evol. 24: 875-888.
    • (2007) Mol. Biol. Evol , vol.24 , pp. 875-888
    • ZHU, Q.H.1    ZHENG, X.M.2    LUO, J.C.3    GAUT, B.S.4    GE, S.5


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