Natural phenological variation in aspen (Populus tremula): The SwAsp collection

Tree Genetics and Genomes

Volumn 4, Issue 2, 2008, Pages 279-292

  Luquez, Virginia ^a,b   Hall, David ^a   Albrectsen, Benedicte R ^a   Karlsson, Jan ^a   Ingvarsson, Pär ^a   Jansson, Stefan ^a  

^a UMEÅ UNIVERSITY   (Sweden)

^b Universidad Nacional de La Plata   (Argentina)

Author keywords

Natural variation; Phenology; Populus tremula

Indexed keywords

POPULUS; POPULUS TREMULA;

EID: 38949171308     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-007-0108-y     Document Type: Article

References (46)

1. Alonso-Blanco C, Koornneef M (2000) Naturally ocurring variation in Arabidopsis: an underexploited resource for plant genetics. Trends Plant Sci 5:22-29
2. Andersson A, Keskitalo J, Sjödin A, Bhalerao RR, Sterky F, Wissel K, Tandre K, Aspeborg H, Moyle R, Ohmiya Y, Bhalerao RP, Brunner A, Gustafsson P, Karlsson J, Lundeberg J, Nilsson O, Sandberg G, Strauss S, Sundberg B, Uhlen M, Jansson S, Nilsson P (2004) A transcriptional timetable of autumn senescence. Genome Biol 5:R24
3. Arora R, Rowland LJ, Tanio K (2003) Induction and release of bud dormancy in woody perennials: a science comes of age. HortScience 38:911-921
4. Bhalerao RR, Keskitalo J, Sterky F, Erlandsson R, Björkbacka H, Birve S, Karlsson J, Gardeström P, Gustafsson P, Lundeberg J, Jansson S (2003) Gene expression in autumn leaves. Plant Physiol 131:430-442
5. Böhlenius H, Huang T, Charbonnel-Campaa L, Brunner AM, Jansson S, Strauss SH, Nilsson O (2006) CO/FT regulatory module controls timing of flowering and seasonal growth cessation in trees. Science 312:1040-1043
6. Box GEP, Tiao GC (1973) Bayesian inference in statistical analysis. Addison-Wesley, Reading, UK
7. Bradshaw HD, Stettler RF (1995) Molecular genetics of growth and development in Populus.IV. Mapping QTLs with large effects on growth, form and phenology traits in a forest tree. Genetics 139:963-973
8. Bradshaw HD, Ceulemans R, Davis J, Stettler R (2000) Emerging model systems in plant biology: poplar (Populus) as a model forest tree. J Plant Growth Regul 19:306-313
9. Brissette JC, Barnes BV (1984) Comparisons of phenology and growth of Michigan and western North American sources of Populus tremuloides. Can J Forest Res 14:789-793
10. Brunner AM, Busov VB, Strauss SH (2004) Poplar genome sequence: functional genomics in as ecologically dominant plant species. Trends Plant Sci 9:49-56
11. Chen THH, Howe GT, Bradshaw HD Jr (2003) Molecular genetic analysis of dormancy related traits in poplars. Weed Sci 50:232-240
12. Cronk QCB (2005) Plant eco-devo: the potential of poplar as a model organism. New Phytol 166:39-48
13. Dunlap JM, Stettler RF (1996) Genetic variation and productivity of Populus trichocarpa and its hybrids. IX. Phenology and Melampsora rust incidence of native black cottonwood clones from four river valleys in Washington. For Ecol Manag 87:233-256
14. Farmer RE (1993) Latitudinal variation in height and phenology of balsam poplar. Silvae Genet 42:148-153
15. Frewen BE, Chen THH, Howe GT, Davis J, Rohde A, Boerjan W, Bradshaw HD (2000) Quantitative trait loci and candidate gene mapping of bud set and bud flush in Populus. Genetics 154:837-845
16. Gelman AJ, Carlin JB, Stern HS, Rubin D (1995) Bayesian data analysis. Chapman & Hall, London
17. Gilchrist EJ, Haughn GW, Ying CC, Otto S, Zhuang J, Cheung D, Hamberger B, Aboutorabi F, Kalynyak T, Johnson L, Bohlmann J, Ellis BS, Douglas CJ, Cronk QCB (2006) Use of Ecotilling as an efficient SNP discovery tool to survey genetic variation in wild populations of Populus trichocarpa. Mol Ecol 15:1367-1378
18. Håbjørg A (1972) Effects of photoperiod and temperature on growth and development of three latitudinal and three altitudinal populations of Betula pubescens Ehrh. Institute of Dendrology and Nursery Management, Agricultural University of Norway, Report No 44, 51:1-27
19. Howe GT, Hackett WP, Furnier GR, Klevorn RE (1995) Photoperiodic responses of a northern and southern ecotype of black cottonwood. Physiol Plant 93:695-708
20. Howe GT, Gardner G, Hackett WP, Furnier GR (1996) Phytochrome control of short-day induced bud set in black cottonwood. Physiol Plant 97:95-103
21. 2 family of hybrid poplars. Theor Appl Genet 101:632-642
22. Hultén E, Fries M (1986) Atlas of North European vascular plants: north of the tropic of cancer I-III. Koeltz Scientifics Books, Königstein
23. Ingvarsson PK (2005) Nucleotide polymorphisms and linkage disequilibrium within and among natural populations of European aspen (Populus tremula L, Salicaceae). Genetics 169:945-953
24. Ingvarsson PK, Garcia MV, Hall D, Luquez V, Jansson S (2006) Clinal variation in phyB2, a candidate gene for day-length induced growth cessation and bud set, across a latitudinal gradient in European aspen (Populus tremula). Genetics 172:1845-1853
25. Jackson JE (2003) A user's guide to principal components. Wiley, Hoboken, NJ
26. Jalas J, Suominen J (1989). Atlas florae europaeae: distribution of vascular plants in Europe, vol 3. Cambridge University Press, Cambridge
27. Koornneef M, Alonso-Blanco C, Vreugdenhil D (2004) Natural occurring genetic variation in Arabidopsis thaliana. Ann Rev Plant Biol 55:141-172
28. Koski V, Sievänen R (1985) Timing of growth cessation in relation to the variations in the growing season. In: Tigersted P, Puttonen P, Smolander H (eds) Crop physiology of forest trees. Helsinki University Press, Helsinki, pp 167-193
29. Lynch M, Walsh B (1998) Genetics and analysis of quantitative traits. Sinauer, Sunderland, MA
30. Neale DB, Savolainen O (2004) Association genetics of complex traits in conifers. Trends Plant Sci 9:325-330
31. Olsen JE, Junttila O, Nilsen J, Erickson ME, Martinussen I, Olsson O, Sandberg G, Moritz T (1997) Ectopic expression of oat phytochrome A in hybrid aspen changes critical daylength for growth and prevents cold acclimatization. Plant J 12:1339-1350
32. Pauley SS, Perry TO (1954) Ecotypic variation of the photoperiodic response in Populus. J Arnold Arbor 35:167-188
33. Pinheiro JC, Bates DM (2000) Mixed-effects models in S and S-PLUS. Springer, Berlin Heidelberg New York
34. Pryor LD, Willing RR (1965) The development of poplar clones suited to low latitudes. Silvae Genet 14:123-127
35. Rafalski A (2002) Applications of single nucleotide polymorphisms in crop genetics. Curr Opin Plant Biol 5:94-100
36. Riemenschneider DE, McMahon BG, Ostry ME (1992) Use of selection indices to increase tree height and to control damaging agents in 2-year-old balsam poplar. Can J For Res 22:561-567
37. Riemenschneider DE, Mc Mahon BG, Ostry ME (1994) Population-dependent selection strategies needed for 2-year-old black cottonwood clones. Can J For Res 24:1704-1710
38. Searle SR (1961) Phenotypic, genetic and environmental correlations. Biometrics 17:474-480
39. Sterky F, Bhalerao RR, Unneberg P, Segerman B, Nilsson P, Brunner A, Charbonnel-Campaa L, Jonsson-Lindvall J, Tandre K, Strauss SH, Sundberg B, Gustafsson P, Uhlén M, Bhalerao RP, Nilsson O, Sandberg G, Karlsson J, Lundeberg J, Jansson S (2004) A Populus EST database for plant functional genomics. Proc Natl Acad Sci USA 101:13951-13956
40. Taylor G (2002) Populus: Arabidopsis for Forestry. Do we need a model tree? Ann Bot 90:681-689
41. Tuskan GA et al (2006) The Genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313:1596-1604
42. Weber JC, Stettler RF, Heilman PE (1985) Genetic variation and productivity of Populus trichocarpa and its hybrids. I. Morphology and phenology of 50 native clones. Can J For Res 15:376-383
43. Welling A, Moritz T, Tapio Palva E, Juntilla O (2002) Independent activation of cold acclimation by low temperature and short photoperiod in hybrid aspen. Plant Physiol 129:1633-1641
44. Whitehead FH, Myerscough PJ (1962) Growth Analysis of Plants. The ratio of mean relative growth rate to mean relative rate of leaf area increase. New Phytol 61:314-321
45. Wullschleger SD, Jansson S, Taylor G (2002) Genomics and forest biology: Populus emerges as the perennial favorite. Plant Cell 14:2651-2655
46. Yu Q, Mäntyla N, Salonen M (2001) Rooting of hybrid clones of Populus tremula L. X P. tremuloides Michx. By stem cuttings derived from micropropagated plants. Scand J For Res 16:238-245