Design, synthesis, and evaluation of a lanthanide chelating protein probe: CLaNP-5 yields predictable paramagnetic effects independent of environment

Journal of the American Chemical Society

Volumn 130, Issue 44, 2008, Pages 14802-14812

  Keizers, Peter H J ^a   Saragliadis, Athanasios ^a   Hiruma, Yoshitaka ^a   Overhand, Mark ^a   Ubbink, Marcellus ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

ALIGNMENT; MAGNETIC PROPERTIES; MAGNETIC SUSCEPTIBILITY; NUCLEAR MAGNETIC RESONANCE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PARAMAGNETIC MATERIALS; RARE EARTH ELEMENTS; STRUCTURAL DESIGN; TENSORS;

ALIGNMENT ANALYSES; CYSTEINE RESIDUES; HIGH QUALITIES; LANTHANIDE; LANTHANIDE CHELATING; LANTHANIDE IONS; MAGNETIC SUSCEPTIBILITY TENSORS; MODEL PROTEINS; NMR PROBES; PARAMAGNETIC EFFECTS; PARAMAGNETIC NMR; PARAMAGNETIC RELAXATION ENHANCEMENTS; PROTEIN BACKBONES; PROTEIN STRUCTURES; PROTEIN SURFACES; PROTEIN-LIGAND INTERACTIONS; REFINE STRUCTURES; SPECTROSCOPIC EVALUATIONS; STRUCTURAL RESTRAINTS;

CHELATION;

CAGED LANTHANIDE NMR PROBE 5; CHELATING AGENT; CYSTEINE; LANTHANIDE; UNCLASSIFIED DRUG;

ARTICLE; CHELATION; EVALUATION; LUMINESCENCE; MAGNETISM; MOLECULAR MODEL; MOLECULAR PROBE; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; SPECTROSCOPY; SYNTHESIS;

CHELATING AGENTS; LANTHANOID SERIES ELEMENTS; LIGANDS; MAGNETICS; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; ORGANOMETALLIC COMPOUNDS; PROTEIN CONFORMATION; PROTEINS; SPECTROMETRY, FLUORESCENCE;

EID: 55549133637     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja8054832     Document Type: Article

References (55)

1. Allegrozzi, M.; Bertini, I.; Janik, M. B.; Lee, Y. M.; Liu, G.; Luchinat, C. J. Am. Chem. Soc. 2000, 122, 4154-4161.
2. Pintacuda, G.; Park, A. Y.; Keniry, M. A.; Dixon, N. E.; Otting, G. J. Am. Chem. Soc. 2006, 128, 3696-3702.
3. Clore, G. M.; Tang, C.; Iwahara, J. Curr. Opin. Struct. Biol. 2007, 17, 603-616.
4. Volkov, A. N.; Worrall, J. A.; Holtzmann, E.; Ubbink, M. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 18945-18950.
5. Kale, S.; Ulas, G.; Song, J.; Brudvig, G. W.; Furey, W.; Jordan, F. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 1158-1163.
6. Battiste, J. L.; Wagner, G. Biochemistry 2000, 39, 5355-5365.
7. Lindfors, H. E.; de Koning, P. E.; Drijfhout, J. W.; Venezia, B.; Ubbink, M. J. Biomol. NMR 2008, 41, 157-167.
8. Horrocks, W. D., Jr.; Sipe, J. P. Science 1972, 177, 994-996.
9. Hinckley, C. C. J. Am. Chem. Soc. 1969, 91, 5160-5162.
10. Biekofsky, R. R.; Muskett, F. W.; Schmidt, J. M.; Martin, S. R.; Browne, J. P.; Bayley, P. M.; Feeney, J. FEBS Lett. 1999, 460, 519-526.
11. Barden, J. A.; Cooke, R.; Wright, P. E.; dos Remedios, C. G. Biochemistry 1980, 19, 5912-5916.
12. Bertini, I.; Janik, M. B.; Lee, Y. M.; Luchinat, C.; Rosato, A. J. Am. Chem. Soc. 2001, 123, 4181-4188.
13. Gay, G. L.; Lindhout, D. A.; Sykes, B. D. Protein Sci. 2004, 13, 640-651.
14. John, M.; Pintacuda, G.; Park, A. Y.; Dixon, N. E.; Otting, G. J. Am. Chem. Soc. 2006, 128, 12910-12916.
15. Su, X. C.; McAndrew, K.; Huber, T.; Otting, G. J. Am. Chem. Soc. 2008, 130, 1681-1687.
16. Martin, L. J.; Hahnke, M. J.; Nitz, M.; Wohnert, J.; Silvaggi, N. R.; Allen, K. N.; Schwalbe, H.; Imperiali, B. J. Am. Chem. Soc. 2007, 129, 7106-7113.
17. Leonov, A.; Voigt, B.; Rodriguez-Castaneda, F.; Sakhaii, P.; Griesinger, C. Chem. - Eur. J. 2005, 11, 3342-3348.
18. Prudencio, M.; Rohovec, J.; Peters, J. A.; Tocheva, E.; Boulanger, M. J.; Murphy, M. E.; Hupkes, H. J.; Kosters, W.; Impagliazzo, A.; Ubbink, M. Chem. - Eur. J. 2004, 10, 3252-3260.
19. Vlasie, M. D.; Comuzzi, C.; van den Nieuwendijk, A. M.; Prudencio, M.; Overhand, M.; Ubbink, M. Chem. - Eur. J. 2007, 13, 1715-1723.
20. Rodriguez-Castaneda, F.; Haberz, P.; Leonov, A.; Griesinger, C. Magn. Reson. Chem. 2006, 44 Spec No, S10-16.
21. Gaponenko, V.; Sarma, S. P.; Altieri, A. S.; Horita, D. A.; Li, J.; Byrd, R. A. J. Biomol. NMR 2004, 28, 205-212.
22. Ikegami, T.; Verdier, L.; Sakhaii, P.; Grimme, S.; Pescatore, B.; Saxena, K.; Fiebig, K. M.; Griesinger, C. J. Biomol. NMR 2004, 29, 339-349.
23. Bertini, I.; Gupta, Y. K.; Luchinat, C.; Parigi, G.; Peana, M.; Sgheri, L.; Yuan, J. J. Am. Chem. Soc. 2007, 129, 12786-12794.
24. Su, X. C.; Man, B.; Beeren, S.; Liang, H.: Simonsen, S.; Schmitz, C.; Huber, T.; Messerle, B. A.; Otting, G. J. Am. Chem. Soc. 2008, 130, 10486-10487.
25. Gaponenko, V.; Dvoretsky, A.; Walsby, C.; Hoffman, B. M.; Rosevear, P. R. Biochemistry 2000, 39, 15217-15224.
26. Zhuang, T.; Lee, H. S.; Imperiali, B.; Prestegard, J. H. Protein Sci. 2008,
27. Wohnert, J.; Franz, K. J.; Nitz, M.; Imperiali, B.; Schwalbe, H. J. Am. Chem. Soc. 2003, 125, 13338-13339.
28. Vlasie, M. D.; Fernandez-Busnadiego, R.; Prudencio, M.; Ubbink, M. J. Mol. Biol. 2008, 375, 1405-1415.
29. Keizers, P. H.; Desreux, J. F.; Overhand, M.; Ubbink, M. J. Am. Chem. Soc. 2007, 129, 9292-9293.
30. Spirlet, M. R.; Rebizant, J.; Desreux, J. F.; Loncin, M. F. Inorg. Chem. 1984, 23, 359-363.
31. Desreux, J. F. Inorg. Chem. 1980, 19, 1319-1324.
32. Di Bari, L.; Pescitelli, G.; Sherry, A. D.; Woods, M. Inorg. Chem. 2005, 44, 8391-8398.
33. Polasek, M.; Rudovsky, J.; Hermann, P.; Lukes, I.; Elst, L. V.; Muller, R. N. Chem. Commun. (Cambridge, U. K.) 2004, 2602-2603.
34. Schmitz, C.; John, M.; Park, A. Y.; Dixon, N. E.; Otting, G.; Pintacuda, G.; Huber, T. J. Biomol. NMR 2006, 35, 79-87.
35. Su, X. C.; Huber, T.; Dixon, N. E.; Otting, G. ChemBioChem 2006, 7, 1599-1604.
36. Clore, G. M.; Schwieters, C. D. J. Am. Chem. Soc. 2004, 126, 2923-2938.
37. Lindorff-Larsen, K.; Best, R. B.; Depristo, M. A.; Dobson, C. M.; Vendruscolo, M. Nature 2005, 433, 128-132.
38. Lange, O. F.; Lakomek, N. A.; Fares, C.; Schroder, G. F.; Walter, K. F.; Becker, S.; Meiler, J.; Grubmuller, H.; Griesinger, C.; de Groot, B. L. Science 2008, 320, 1471-1475.
39. John, M.; Park, A. Y.; Dixon, N. E.; Otting, G. J. Am. Chem. Soc. 2007, 129, 462-463.
40. Barbieri, R.; Bertini, I.; Cavallaro, G.; Lee, Y. M.; Luchinat, C.; Rosato, A. J. Am. Chem. Soc. 2002, 124, 5581-5587.
41. Mustafi, S. M.; Mukherjee, S.; Chary, K. V.; Cavallaro, G. Proteins 2006, 65, 656-669.
42. Tang, C.; Ghirlando, R.; Clore, G. M. J. Am. Chem. Soc. 2008, 130, 4048-4056.
43. Rumpel, S.; Becker, S.; Zweckstetter, M. J. Biomol. NMR 2008, 40, 1-13.
44. Bremberg, U.; Rahm, F.; Moberg, C. Tetrahedron: Asymmetry 1998, 9, 3437-3443.
45. Mizuno, Y.; Endo, T.; Miyaoka, T.; Ikeda, K. J. Org. Chem. 1974, 39, 1250-1255.
46. Helgstrand, M.; Kraulis, P.; Allard, P.; Hard, T. J. Biomol. NMR 2000, 18, 329-336.
47. Impagliazzo, A.; Ubbink, M. J. Biomol. NMR 2004, 29, 541-542.
48. Hulsker, R.; Baranova, M. V.; Bullerjahn, G. S.; Ubbink, M. J. Am. Chem. Soc. 2008, 130, 1985-1991.
49. Schwieters, C. D.; Kuszewski, J. J.; Tjandra, N.; Clore, G. M. J. Magn. Reson. 2003, 160, 65-73.
50. Banci, L.; Bertini, I.; Cavallaro, G.; Giachetti, A.; Luchinat, C.; Parigi, G. J. Biomol. NMR 2004, 28, 249-261.
51. Worrall, J. A.; Kolczak, U.; Canters, G. W.; Ubbink, M. Biochemistry 2001, 40, 7069-7076.
52. Solomon, I.; Bloembergen, N. J. Chem. Phys. 1956, 25, 261-266.
53. Tjandra, N.; Omichinski, J. G.; Gronenborn, A. M.; Clore, G. M.; Bax, A. Nat. Struct. Biol. 1997, 4, 732-738.
54. Valafar, H.; Prestegard, J. H. J. Magn. Reson. 2004, 167, 228-241.
55. Dosset, P.; Hus, J. C.; Marion, D.; Blackledge, M. J. Biomol. NMR 2001, 20, 223-231.