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Volumn 16, Issue 1-2, 2008, Pages 124-135

The genome organization of Ralstonia eutropha strain H16 and related species of the Burkholderiaceae

Author keywords

Burkholderiaceae; Burkholderiaceae genomes; Cupriavidusnecator H16; Genome organization; Ralstonia eutropha strain H16

Indexed keywords

BURKHOLDERIACEAE; CHROMOSOME; CUPRIAVIDUS NECATOR; GENE REPLICATION; GENE SEQUENCE; GENOME; NUCLEOTIDE SEQUENCE; PLASMID; REPLICON; REVIEW;

EID: 55249109000     PISSN: 14641801     EISSN: None     Source Type: Journal    
DOI: 10.1159/000142899     Document Type: Review
Times cited : (19)

References (49)
  • 1
    • 0001631678 scopus 로고
    • The mesophilic hydrogen-oxidizing (Knallgas) bacteria
    • Balows A, Trüper HG, Dworkin M, et al eds, New York, Springer
    • Aragno M, Schlegel HG: The mesophilic hydrogen-oxidizing (Knallgas) bacteria; in Balows A, Trüper HG, Dworkin M, et al (eds): The Prokaryotes. New York, Springer, 1992, pp 344-384.
    • (1992) The Prokaryotes , pp. 344-384
    • Aragno, M.1    Schlegel, H.G.2
  • 3
    • 0036318686 scopus 로고    scopus 로고
    • 2 assimilation in the chemoautotroph Ralstonia eutropha
    • 2 assimilation in the chemoautotroph Ralstonia eutropha. Arch Microbiol 2002; 178:85-93.
    • (2002) Arch Microbiol , vol.178 , pp. 85-93
    • Bowien, B.1    Kusian, B.2
  • 4
    • 0019364877 scopus 로고
    • Physiology and biochemistry of aerobic hydrogen-oxidizing bacteria
    • Bowien B, Schlegel HG: Physiology and biochemistry of aerobic hydrogen-oxidizing bacteria. Annu Rev Microbiol 1981; 35:405-452.
    • (1981) Annu Rev Microbiol , vol.35 , pp. 405-452
    • Bowien, B.1    Schlegel, H.G.2
  • 5
    • 0031919229 scopus 로고    scopus 로고
    • Burkholderia thailandensis sp. nov., a Burkholderia pseudomallei -like species
    • Brett PJ, DeShazer D, Woods DE: Burkholderia thailandensis sp. nov., a Burkholderia pseudomallei -like species. Int J Syst Bacteriol 1998; 48:317-320.
    • (1998) Int J Syst Bacteriol , vol.48 , pp. 317-320
    • Brett, P.J.1    DeShazer, D.2    Woods, D.E.3
  • 7
    • 55249110895 scopus 로고    scopus 로고
    • Genomic view of energy metabolism in Ralstonia eutropha H16
    • Cramm R: Genomic view of energy metabolism in Ralstonia eutropha H16. J Mol Microbiol Biotechnol 2009;16:38-52.
    • (2009) J Mol Microbiol Biotechnol , vol.16 , pp. 38-52
    • Cramm, R.1
  • 8
    • 0026088981 scopus 로고
    • Melioidosis: The tip of the iceberg?
    • Dance DA: Melioidosis: the tip of the iceberg? Clin Microbiol Rev 1991;4:52-60.
    • (1991) Clin Microbiol Rev , vol.4 , pp. 52-60
    • Dance, D.A.1
  • 11
    • 32444435120 scopus 로고    scopus 로고
    • ParABS systems of the four replicons of Burkholderia cenocepacia: New chromosome centromeres confer partition specificity
    • Dubarry N, Pasta F, Lane D: ParABS systems of the four replicons of Burkholderia cenocepacia: new chromosome centromeres confer partition specificity. J Bacteriol 2006;188:1489-1496.
    • (2006) J Bacteriol , vol.188 , pp. 1489-1496
    • Dubarry, N.1    Pasta, F.2    Lane, D.3
  • 12
    • 0019371241 scopus 로고
    • Naturally occurring genetic transfer of hydrogen-oxidizing ability between strains of Alcaligenes eutrophus
    • Friedrich B, Hogrefe C, Schlegel HG: Naturally occurring genetic transfer of hydrogen-oxidizing ability between strains of Alcaligenes eutrophus. J Bacteriol 1981;147:198-205.
    • (1981) J Bacteriol , vol.147 , pp. 198-205
    • Friedrich, B.1    Hogrefe, C.2    Schlegel, H.G.3
  • 13
    • 0021720088 scopus 로고
    • The dnaA protein complex with the E. coli chromosomal replication origin (oriC) and other DNA sites
    • Fuller RS, Funnell BE, Kornberg A: The dnaA protein complex with the E. coli chromosomal replication origin (oriC) and other DNA sites. Cell 1984;38:889-900.
    • (1984) Cell , vol.38 , pp. 889-900
    • Fuller, R.S.1    Funnell, B.E.2    Kornberg, A.3
  • 14
    • 0031013033 scopus 로고    scopus 로고
    • Genome organization of Pseudomonas stutzeri and resulting taxonomic and evolutionary considerations
    • Ginard M, Lalucat J, Tümmler B, Römling U: Genome organization of Pseudomonas stutzeri and resulting taxonomic and evolutionary considerations. Int J Syst Bacteriol 1997;47:132-143.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 132-143
    • Ginard, M.1    Lalucat, J.2    Tümmler, B.3    Römling, U.4
  • 15
    • 0038628890 scopus 로고    scopus 로고
    • Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei
    • Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG: Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 2003;41:2068-2079.
    • (2003) J Clin Microbiol , vol.41 , pp. 2068-2079
    • Godoy, D.1    Randle, G.2    Simpson, A.J.3    Aanensen, D.M.4    Pitt, T.L.5    Kinoshita, R.6    Spratt, B.G.7
  • 17
    • 0032524384 scopus 로고    scopus 로고
    • Analyzing genomes with cumulative skew diagrams
    • Grigoriev A: Analyzing genomes with cumulative skew diagrams. Nucleic Acids Res 1998;26:2286-2290.
    • (1998) Nucleic Acids Res , vol.26 , pp. 2286-2290
    • Grigoriev, A.1
  • 19
    • 0001848870 scopus 로고    scopus 로고
    • Ralstonia solanacearum
    • London, Academic Press
    • Hayward AC: Ralstonia solanacearum; in Encyclopedia of Microbiology. London, Academic Press, 2000, vol 4, pp 32-42.
    • (2000) Encyclopedia of Microbiology , vol.4 , pp. 32-42
    • Hayward, A.C.1
  • 20
    • 0021275183 scopus 로고
    • Alcaligenes eutrophus hydrogenase genes (Hox)
    • Hogrefe C, Römermann D, Friedrich B: Alcaligenes eutrophus hydrogenase genes (Hox). J Bacteriol 1984;158:43-48.
    • (1984) J Bacteriol , vol.158 , pp. 43-48
    • Hogrefe, C.1    Römermann, D.2    Friedrich, B.3
  • 21
    • 4644274415 scopus 로고    scopus 로고
    • Holden MT, Titball RW, Peacock SJ, Cerdeno-Tarraga AM, Atkins T, Crossman LC, Pitt T, Churcher C, Mungall K, Bentley SD, Sebaihia M, Thomson NR, Bason N, Beacham IR, Brooks K, Brown KA, Brown NF, Challis GL, Cherevach I, Chillingworth T, Cronin A, Crossett B, Davis P, DeShazer D, Feltwell T, Fraser A, Hance Z, Hauser H, Holroyd S, Jagels K, Keith KE, Maddison M, Moule S, Price C, Quail MA, Rabbinowitsch E, Rutherford K, Sanders M, Simmonds M, Songsivilai S, Stevens K, Tumapa S, Vesaratchavest M, Whitehead S, Yeats C, Barrell BG, Oyston PC, Parkhill J: Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei. Proc Natl Acad Sci USA 2004;101:14240-14245.
    • Holden MT, Titball RW, Peacock SJ, Cerdeno-Tarraga AM, Atkins T, Crossman LC, Pitt T, Churcher C, Mungall K, Bentley SD, Sebaihia M, Thomson NR, Bason N, Beacham IR, Brooks K, Brown KA, Brown NF, Challis GL, Cherevach I, Chillingworth T, Cronin A, Crossett B, Davis P, DeShazer D, Feltwell T, Fraser A, Hance Z, Hauser H, Holroyd S, Jagels K, Keith KE, Maddison M, Moule S, Price C, Quail MA, Rabbinowitsch E, Rutherford K, Sanders M, Simmonds M, Songsivilai S, Stevens K, Tumapa S, Vesaratchavest M, Whitehead S, Yeats C, Barrell BG, Oyston PC, Parkhill J: Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei. Proc Natl Acad Sci USA 2004;101:14240-14245.
  • 22
    • 0015102447 scopus 로고
    • Dissimilation of aromatic compounds by Alcaligenes eutrophus
    • Johnson BF, Stanier RY: Dissimilation of aromatic compounds by Alcaligenes eutrophus. J Bacteriol 1971;107:468-475.
    • (1971) J Bacteriol , vol.107 , pp. 468-475
    • Johnson, B.F.1    Stanier, R.Y.2
  • 23
    • 0034076694 scopus 로고    scopus 로고
    • Sequence diversity of Pseudomonas aeruginosa: Impact on population structure and genome evolution
    • Kiewitz C, Tümmler B: Sequence diversity of Pseudomonas aeruginosa: impact on population structure and genome evolution. J Bacteriol 2000;182:3125-3135.
    • (2000) J Bacteriol , vol.182 , pp. 3125-3135
    • Kiewitz, C.1    Tümmler, B.2
  • 24
    • 0030724104 scopus 로고    scopus 로고
    • 2 assimilation genes in autotrophic bacteria
    • 2 assimilation genes in autotrophic bacteria. FEMS Microbiol Rev 1997;21:135-155.
    • (1997) FEMS Microbiol Rev , vol.21 , pp. 135-155
    • Kusian, B.1    Bowien, B.2
  • 25
    • 0034063607 scopus 로고    scopus 로고
    • ATPase switches controlling DNA replication initiation
    • Lee DG, Bell SP: ATPase switches controlling DNA replication initiation. Curr Opin Cell Biol 2000;12:280-285.
    • (2000) Curr Opin Cell Biol , vol.12 , pp. 280-285
    • Lee, D.G.1    Bell, S.P.2
  • 26
    • 12344330656 scopus 로고    scopus 로고
    • Second chromosomes and megaplasmids in bacteria
    • Funnell BE, Phillips GJ eds, Washington, American Society for Microbiology Press
    • MacLellan SR, Sibley CD, Finan TM: Second chromosomes and megaplasmids in bacteria; in Funnell BE, Phillips GJ (eds): Plasmid Biology. Washington, American Society for Microbiology Press, 2004, pp 529-542.
    • (2004) Plasmid Biology , pp. 529-542
    • MacLellan, S.R.1    Sibley, C.D.2    Finan, T.M.3
  • 27
    • 0033046562 scopus 로고    scopus 로고
    • Metabolic engineering of poly(3- hydroxyalkanoates): From DNA to plastic
    • Madison LL, Huisman GW: Metabolic engineering of poly(3- hydroxyalkanoates): from DNA to plastic. Microbiol Mol Biol Rev 1999; 63:21-53.
    • (1999) Microbiol Mol Biol Rev , vol.63 , pp. 21-53
    • Madison, L.L.1    Huisman, G.W.2
  • 29
    • 0042355274 scopus 로고    scopus 로고
    • Parkhill J, Sebaihia M, Preston A, Murphy LD, Thomson N, Harris DE, Holden MT, Churcher CM, Bentley SD, Mungall KL, Cerdeno-Tarraga AM, Temple L, James K, Harris B, Quail MA, Achtman M, Atkin R, Baker S, Basham D, Bason N, Cherevach I, Chillingworth T, Collins M, Cronin A, Davis P, Doggett J, Feltwell T, Goble A, Hamlin N, Hauser H, Holroyd S, Jagels K, Leather S, Moule S, Norberczak H, O'Neil S, Ormond D, Price C, Rabbinowitsch E, Rutter S, Sanders M, Saunders D, Seeger K, Sharp S, Simmonds M, Skelton J, Squares R, Squares S, Stevens K, Unwin L, Whitehead S, Barrell BG, Maskell DJ: Comparative analysis of the genome sequences of Bordetella pertussis , Bordetella parapertussis and Bordetella bronchiseptica. Nat Genet 2003;35:32-40.
    • Parkhill J, Sebaihia M, Preston A, Murphy LD, Thomson N, Harris DE, Holden MT, Churcher CM, Bentley SD, Mungall KL, Cerdeno-Tarraga AM, Temple L, James K, Harris B, Quail MA, Achtman M, Atkin R, Baker S, Basham D, Bason N, Cherevach I, Chillingworth T, Collins M, Cronin A, Davis P, Doggett J, Feltwell T, Goble A, Hamlin N, Hauser H, Holroyd S, Jagels K, Leather S, Moule S, Norberczak H, O'Neil S, Ormond D, Price C, Rabbinowitsch E, Rutter S, Sanders M, Saunders D, Seeger K, Sharp S, Simmonds M, Skelton J, Squares R, Squares S, Stevens K, Unwin L, Whitehead S, Barrell BG, Maskell DJ: Comparative analysis of the genome sequences of Bordetella pertussis , Bordetella parapertussis and Bordetella bronchiseptica. Nat Genet 2003;35:32-40.
  • 30
    • 0002417001 scopus 로고
    • Evolution and spread of pesticide degrading ability among soil microorganisms
    • Timmis KN, Pühler A eds, Amsterdam, Elsevier
    • Pemberton JM, Corney B, Don RH: Evolution and spread of pesticide degrading ability among soil microorganisms; in Timmis KN, Pühler A (eds): Plasmids of Medical, Environmental and Commercial Importance. Amsterdam, Elsevier, 1979, pp 287-299.
    • (1979) Plasmids of Medical, Environmental and Commercial Importance , pp. 287-299
    • Pemberton, J.M.1    Corney, B.2    Don, R.H.3
  • 32
    • 0027233051 scopus 로고
    • Long-term survival of Bordetella bronchiseptica in lake water and in buffered saline without added nutrients
    • Porter JF, Wardlaw AC: Long-term survival of Bordetella bronchiseptica in lake water and in buffered saline without added nutrients. FEMS Microbiol Lett 1993;110:33-36.
    • (1993) FEMS Microbiol Lett , vol.110 , pp. 33-36
    • Porter, J.F.1    Wardlaw, A.C.2
  • 34
    • 13244252316 scopus 로고    scopus 로고
    • Visualization of comparative genomic analyses by BLAST score ratio
    • Rasko DA, Myers GS, Ravel J: Visualization of comparative genomic analyses by BLAST score ratio. BMC Bioinformatics 2005;6:2.
    • (2005) BMC Bioinformatics , vol.6 , pp. 2
    • Rasko, D.A.1    Myers, G.S.2    Ravel, J.3
  • 35
    • 55249098183 scopus 로고    scopus 로고
    • Ralstonia eutropha H16 as model organism for PHA metabolism and for biotechnological production of technically interesting biopolymers
    • Reinecke F, Steinbüchel A: Ralstonia eutropha H16 as model organism for PHA metabolism and for biotechnological production of technically interesting biopolymers. J Mol Microbiol Biotechnol 2009;16:91-108.
    • (2009) J Mol Microbiol Biotechnol , vol.16 , pp. 91-108
    • Reinecke, F.1    Steinbüchel, A.2
  • 38
    • 33744748269 scopus 로고    scopus 로고
    • Cupriavidus pinatubonensis sp. nov. and Cupriavidus laharis sp. nov., novel hydrogen-oxidizing, facultatively chemolithotrophic bacteria isolated from volcanic mudflow deposits from Mt. Pinatubo in the Philippines
    • Sato Y, Nishihara H, Yoshida M, Watanabe M, Rondal JD, Concepcion RN, Ohta H: Cupriavidus pinatubonensis sp. nov. and Cupriavidus laharis sp. nov., novel hydrogen-oxidizing, facultatively chemolithotrophic bacteria isolated from volcanic mudflow deposits from Mt. Pinatubo in the Philippines. Int J Syst Evol Microbiol 2006;56:973-978.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 973-978
    • Sato, Y.1    Nishihara, H.2    Yoshida, M.3    Watanabe, M.4    Rondal, J.D.5    Concepcion, R.N.6    Ohta, H.7
  • 39
    • 0030027260 scopus 로고    scopus 로고
    • Comparative genome mapping of Pseudomonas aeruginosa PAO with P. aeruginosa C, which belongs to a major clone in cystic fibrosis patients and aquatic habitats
    • Schmidt KD, Tümmler B, Römling U: Comparative genome mapping of Pseudomonas aeruginosa PAO with P. aeruginosa C, which belongs to a major clone in cystic fibrosis patients and aquatic habitats. J Bacteriol 1996;178:85-93.
    • (1996) J Bacteriol , vol.178 , pp. 85-93
    • Schmidt, K.D.1    Tümmler, B.2    Römling, U.3
  • 40
    • 0035943114 scopus 로고    scopus 로고
    • A physical map of the megaplasmid pHG1, one of three genomic replicons in Ralstonia eutropha H16
    • Schwartz E, Friedrich B: A physical map of the megaplasmid pHG1, one of three genomic replicons in Ralstonia eutropha H16. FEMS Microbiol Lett 2001;201:213-219.
    • (2001) FEMS Microbiol Lett , vol.201 , pp. 213-219
    • Schwartz, E.1    Friedrich, B.2
  • 41
    • 34250882825 scopus 로고    scopus 로고
    • 2-metabolizing prokaryotes
    • Dworkin M, Falkow S, Rosenberg E, et al eds, New York, Springer
    • 2-metabolizing prokaryotes; in Dworkin M, Falkow S, Rosenberg E, et al (eds): The Prokaryotes. New York, Springer, 2006, pp 496-563.
    • (2006) The Prokaryotes , pp. 496-563
    • Schwartz, E.1    Friedrich, B.2
  • 44
    • 0026033649 scopus 로고
    • Physiology and molecular genetics of poly(β-hydroxyalkanoic acid) synthesis in Alcaligenes eutrophus
    • Steinbüchel A, Schlegel HG: Physiology and molecular genetics of poly(β-hydroxyalkanoic acid) synthesis in Alcaligenes eutrophus. Mol Microbiol 1991;5:535-542.
    • (1991) Mol Microbiol , vol.5 , pp. 535-542
    • Steinbüchel, A.1    Schlegel, H.G.2
  • 45
    • 9744280392 scopus 로고    scopus 로고
    • Taxonomy of the genus Cupriavidus: A tale of lost and found
    • Vandamme P, Coenye T: Taxonomy of the genus Cupriavidus: a tale of lost and found. Int J Syst Evol Microbiol 2004;54:2285-2289.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 2285-2289
    • Vandamme, P.1    Coenye, T.2
  • 47
    • 1842423292 scopus 로고    scopus 로고
    • Vaneechoutte M, Kämpfer P, De Baere T, Falsen E, Verschraegen G: Wautersia gen. nov., a novel genus accommodating the phylogenetic lineage including Ralstonia eutropha and related species, and proposal of Ralstonia [Pseudomonas] syzygii [Roberts et al., 1990] comb. nov. Int J Syst Evol Microbiol 2004;54: 317-327.
    • Vaneechoutte M, Kämpfer P, De Baere T, Falsen E, Verschraegen G: Wautersia gen. nov., a novel genus accommodating the phylogenetic lineage including Ralstonia eutropha and related species, and proposal of Ralstonia [Pseudomonas] syzygii [Roberts et al., 1990] comb. nov. Int J Syst Evol Microbiol 2004;54: 317-327.
  • 49
    • 0027096070 scopus 로고
    • Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia [Palleroni and Holmes, 1981] comb. nov
    • Yabuuchi E, Kosako Y, Oyaizu H, Yano I, Hotta H, Hashimoto Y, Ezaki T, Arakawa M: Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia [Palleroni and Holmes, 1981] comb. nov. Microbiol Immunol 1992;36:1251-1275.
    • (1992) Microbiol Immunol , vol.36 , pp. 1251-1275
    • Yabuuchi, E.1    Kosako, Y.2    Oyaizu, H.3    Yano, I.4    Hotta, H.5    Hashimoto, Y.6    Ezaki, T.7    Arakawa, M.8


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