-
1
-
-
3442896886
-
NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases
-
Ansari M.Z., Yadav G., Gokhale R.S., and Mohanty D. NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases. Nucleic Acids Res. 32 (2004) 405-413
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 405-413
-
-
Ansari, M.Z.1
Yadav, G.2
Gokhale, R.S.3
Mohanty, D.4
-
2
-
-
0033759218
-
Sequence analysis and functional characterization of the violacein biosynthetic pathway from Chromobacterium violaceum
-
August P.R., Grossman T.H., Minor C., Draper M.P., MacNeil I.A., Pemberton J.M., et al. Sequence analysis and functional characterization of the violacein biosynthetic pathway from Chromobacterium violaceum. J. Mol. Microbiol. Biotechnol. 2 (2000) 513-519
-
(2000)
J. Mol. Microbiol. Biotechnol.
, vol.2
, pp. 513-519
-
-
August, P.R.1
Grossman, T.H.2
Minor, C.3
Draper, M.P.4
MacNeil, I.A.5
Pemberton, J.M.6
-
3
-
-
17044375892
-
High molecular weight DNA recovery from soils prerequisite for biotechnological metagenomic library construction
-
Bertrand H., Poly F., Van Tran V., Lombard N., Nalin R., Vogel T.M., and Simonet P. High molecular weight DNA recovery from soils prerequisite for biotechnological metagenomic library construction. J. Microbiol. Methods 62 (2005) 1-11
-
(2005)
J. Microbiol. Methods
, vol.62
, pp. 1-11
-
-
Bertrand, H.1
Poly, F.2
Van Tran, V.3
Lombard, N.4
Nalin, R.5
Vogel, T.M.6
Simonet, P.7
-
4
-
-
0037189889
-
New natural product families from an environmental DNA (eDNA) gene cluster
-
Brady S.F., Chao C.J., and Clardy J. New natural product families from an environmental DNA (eDNA) gene cluster. J. Am. Chem. Soc. 124 (2002) 9968-9969
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 9968-9969
-
-
Brady, S.F.1
Chao, C.J.2
Clardy, J.3
-
5
-
-
0036952825
-
Identification and localization of the gene cluster encoding biosynthesis of the antitumor macrolactam leinamycin in Streptomyces atroolivaceus S-140
-
Cheng Y.Q., Tang G.L., and Shen B. Identification and localization of the gene cluster encoding biosynthesis of the antitumor macrolactam leinamycin in Streptomyces atroolivaceus S-140. J. Bacterilogy 184 (2002) 7013-7024
-
(2002)
J. Bacterilogy
, vol.184
, pp. 7013-7024
-
-
Cheng, Y.Q.1
Tang, G.L.2
Shen, B.3
-
6
-
-
38949193318
-
Forest soil metagenome gene cluster involved in antifungal activity expression in Escherichia coli
-
Chung E.J., et al. Forest soil metagenome gene cluster involved in antifungal activity expression in Escherichia coli. Appl. Environ. Microbiol. 74 (2008) 723-730
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 723-730
-
-
Chung, E.J.1
-
7
-
-
34547686154
-
Pseudomonas community structure and antagonistic potential in the rhizosphere: insights gained by combining phylogenetic and functional gene-based analyses
-
Costa R., Gomes N.C.M., Krögerrecklenfort E., Opelt K., Berg G., and Smalla K. Pseudomonas community structure and antagonistic potential in the rhizosphere: insights gained by combining phylogenetic and functional gene-based analyses. Environ. Microbiol. 9 (2007) 2260-2273
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 2260-2273
-
-
Costa, R.1
Gomes, N.C.M.2
Krögerrecklenfort, E.3
Opelt, K.4
Berg, G.5
Smalla, K.6
-
8
-
-
0346035740
-
Recombinant environmental libraries provide access to microbial diversity for drug discovery from natural products
-
Courtois S., Cappellano S., Ball C.M., Francou M., Normand F.X., Helynck P., Martinez G.A., Kolvek S.J., Hopke J., Osburne M.S., August P.R., Nalin R., Guerineau M., Jeannin P., Simonet P., and Pernodet J.L. Recombinant environmental libraries provide access to microbial diversity for drug discovery from natural products. Appl. Environ. Microbiol. 69 (2003) 49-55
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 49-55
-
-
Courtois, S.1
Cappellano, S.2
Ball, C.M.3
Francou, M.4
Normand, F.X.5
Helynck, P.6
Martinez, G.A.7
Kolvek, S.J.8
Hopke, J.9
Osburne, M.S.10
August, P.R.11
Nalin, R.12
Guerineau, M.13
Jeannin, P.14
Simonet, P.15
Pernodet, J.L.16
-
9
-
-
19144366982
-
The metagenomics of soil
-
Daniel R. The metagenomics of soil. Nat. Rev. Microbiol. 3 (2005) 470-478
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 470-478
-
-
Daniel, R.1
-
10
-
-
34247606048
-
Isolation and characterization of soil bacteria that define Terriglobus gen nov., in the phylum Acidobacteria
-
Eichorst S.A., Breznak J.A., and Schmidt T.M. Isolation and characterization of soil bacteria that define Terriglobus gen nov., in the phylum Acidobacteria. Appl. Environ. Microbiol. 73 (2007) 2708-2717
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 2708-2717
-
-
Eichorst, S.A.1
Breznak, J.A.2
Schmidt, T.M.3
-
11
-
-
4143141098
-
Production of antifungal compounds by Lysobacter enzymogenes isolate 3.1T8 under different conditions in relation to its efficacy as a biocontrol agent of Pythium aphanidermatum in cucumber
-
Folman L.B., De Klein, Postma J., and Van Veen J.A. Production of antifungal compounds by Lysobacter enzymogenes isolate 3.1T8 under different conditions in relation to its efficacy as a biocontrol agent of Pythium aphanidermatum in cucumber. Biol. Control 21 (2004) 145-154
-
(2004)
Biol. Control
, vol.21
, pp. 145-154
-
-
Folman, L.B.1
De Klein2
Postma, J.3
Van Veen, J.A.4
-
12
-
-
23944525404
-
Computational improvements reveal great bacterial diversity and high metal toxicity in soil
-
Gans J., Wolinsky M., and Dunbar J. Computational improvements reveal great bacterial diversity and high metal toxicity in soil. Science 309 (2005) 1387-1390
-
(2005)
Science
, vol.309
, pp. 1387-1390
-
-
Gans, J.1
Wolinsky, M.2
Dunbar, J.3
-
13
-
-
55149120843
-
-
Garbeva, P., 2005. The Significance of Microbial Diversity in Agricultural Soil for Disease Suppressiveness. Ph.D. Thesis. Leiden University, Leiden, NL.
-
Garbeva, P., 2005. The Significance of Microbial Diversity in Agricultural Soil for Disease Suppressiveness. Ph.D. Thesis. Leiden University, Leiden, NL.
-
-
-
-
14
-
-
3242815540
-
Quantitative detection and diversity of the pyrrolnitrin biosynthetic locus in soil under different treatments
-
Garbeva P., Voesenek K., and Van Elsas J.D. Quantitative detection and diversity of the pyrrolnitrin biosynthetic locus in soil under different treatments. Soil Biol Biochem. 36 (2004) 1453-1463
-
(2004)
Soil Biol Biochem.
, vol.36
, pp. 1453-1463
-
-
Garbeva, P.1
Voesenek, K.2
Van Elsas, J.D.3
-
15
-
-
33644862479
-
Effect of above-ground plant species on soil microbial community structure and its impact on suppression of Rhizoctonia solani
-
Garbeva P., Postma J., van Veen J.A., and Van Elsas J.D. Effect of above-ground plant species on soil microbial community structure and its impact on suppression of Rhizoctonia solani. Environ. Microbiol. 8 (2006) 233-246
-
(2006)
Environ. Microbiol.
, vol.8
, pp. 233-246
-
-
Garbeva, P.1
Postma, J.2
van Veen, J.A.3
Van Elsas, J.D.4
-
16
-
-
0036727242
-
Isolation of antibiotics turbomycin A and B from a metagenomic library of soil microbial DNA
-
Gillespie D.E., Brady S.F., Bettermann A.D., Cianciotto N.P., Liles M.R., Rondon M.R., et al. Isolation of antibiotics turbomycin A and B from a metagenomic library of soil microbial DNA. Appl. Environ. Microbiol. 68 (2002) 4301-4306
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 4301-4306
-
-
Gillespie, D.E.1
Brady, S.F.2
Bettermann, A.D.3
Cianciotto, N.P.4
Liles, M.R.5
Rondon, M.R.6
-
17
-
-
4644371642
-
Phylogenetic analysis of polyketide synthase I domains from soil metagenomic libraries allows selection of promising clones
-
Ginolhac A., Jarrin C., Gillet B., Robe P., Pujic P., Tuphile K., Bertrand H., Vogel T.M., Perrière G., Simonet P., and Nalin R. Phylogenetic analysis of polyketide synthase I domains from soil metagenomic libraries allows selection of promising clones. Appl. Environ. Microbiol. 70 (2004) 5522-5527
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 5522-5527
-
-
Ginolhac, A.1
Jarrin, C.2
Gillet, B.3
Robe, P.4
Pujic, P.5
Tuphile, K.6
Bertrand, H.7
Vogel, T.M.8
Perrière, G.9
Simonet, P.10
Nalin, R.11
-
18
-
-
10344227692
-
Metagenomics: application of genomics to uncultured microorganisms
-
Handelsman J. Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 68 (2004) 669-684
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 669-684
-
-
Handelsman, J.1
-
19
-
-
0033578297
-
Organization of the biosynthetic gene cluster for the polyketide anthelmintic macrolide avermectin in Streptomyces avermitilis
-
Ikeda H., Nonomiya T., Usami M., Ohta T., and Omura S. Organization of the biosynthetic gene cluster for the polyketide anthelmintic macrolide avermectin in Streptomyces avermitilis. Proc. Natl. Acad. Sci. U. S. A. 96 (1999) 9509-9514
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 9509-9514
-
-
Ikeda, H.1
Nonomiya, T.2
Usami, M.3
Ohta, T.4
Omura, S.5
-
20
-
-
2142687113
-
Laboratory cultivation of widespread and previously uncultured soil bacteria
-
Joseph J.S., Hugenholtz P., Sangwan P., Osborne C., and Janssen P.H. Laboratory cultivation of widespread and previously uncultured soil bacteria. Appl. Environ. Microbiol. 69 (2003) 7210-7215
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 7210-7215
-
-
Joseph, J.S.1
Hugenholtz, P.2
Sangwan, P.3
Osborne, C.4
Janssen, P.H.5
-
21
-
-
34248211629
-
Finding the needles in the metagenome haystack
-
Kowalchuk G.A., Speksnijder A.G.C.L., Zhang K., Goodman R.M., and Van Veen J.A. Finding the needles in the metagenome haystack. Microb. Ecol. 53 (2007) 475-485
-
(2007)
Microb. Ecol.
, vol.53
, pp. 475-485
-
-
Kowalchuk, G.A.1
Speksnijder, A.G.C.L.2
Zhang, K.3
Goodman, R.M.4
Van Veen, J.A.5
-
22
-
-
14344254418
-
-
Springer Verlag, Heidelberg, Germany
-
Kowalchuk G.A., De Bruijn F.J., Akkermans A.D.L., Head I.M., and van Elsas J.D. Molecular Microbial Ecology Manual II (2005), Springer Verlag, Heidelberg, Germany
-
(2005)
Molecular Microbial Ecology Manual II
-
-
Kowalchuk, G.A.1
De Bruijn, F.J.2
Akkermans, A.D.L.3
Head, I.M.4
van Elsas, J.D.5
-
23
-
-
34249080037
-
Metagenomics: an inexhaustible access to nature's diversity
-
Langer M., Gabor E.M., Liebeton K., Meurer G., Niehaus F., Schulze R., Eck J., and Lorenz P. Metagenomics: an inexhaustible access to nature's diversity. Biotech. J. 1 (2006) 815-821
-
(2006)
Biotech. J.
, vol.1
, pp. 815-821
-
-
Langer, M.1
Gabor, E.M.2
Liebeton, K.3
Meurer, G.4
Niehaus, F.5
Schulze, R.6
Eck, J.7
Lorenz, P.8
-
24
-
-
35348908980
-
The magic and menace of metagenomics: prospects for the study of plant growth-promoting rhizobacteria
-
10.1007/s10658-007-9186-9
-
Leveau J.H.J. The magic and menace of metagenomics: prospects for the study of plant growth-promoting rhizobacteria. Eur. J. Plant Pathol. 119 (2007) 279-300 10.1007/s10658-007-9186-9
-
(2007)
Eur. J. Plant Pathol.
, vol.119
, pp. 279-300
-
-
Leveau, J.H.J.1
-
25
-
-
0028985414
-
Evaluation of methods for extraction of bacteria from soil
-
Lindahl V., and Bakken L.R. Evaluation of methods for extraction of bacteria from soil. FEMS Microbiol. Ecol. 16 (1995) 135-142
-
(1995)
FEMS Microbiol. Ecol.
, vol.16
, pp. 135-142
-
-
Lindahl, V.1
Bakken, L.R.2
-
26
-
-
0001972373
-
Recovery of bacterial cells from soil
-
Trevors J.T., and van Elsas J.D. (Eds), Springer Verlag, Heidelberg, Germany
-
Lindahl V., and Bakken L.R. Recovery of bacterial cells from soil. In: Trevors J.T., and van Elsas J.D. (Eds). Nucleic Acids in the Environment (1995), Springer Verlag, Heidelberg, Germany 9-28
-
(1995)
Nucleic Acids in the Environment
, pp. 9-28
-
-
Lindahl, V.1
Bakken, L.R.2
-
27
-
-
0035079979
-
Expression and isolation of antimicrobial small molecules from soil DNA libraries
-
MacNeil I.A., Tiong C.L., Minor C., August P.R., Grossman T.H., Loiacono K.A., Lynch B.A., Phillips T., Narula S., Sundaramoorthi R., Tyler A., Aldredge T., Long H., Gilman M., Holt D., and Osburne M.S. Expression and isolation of antimicrobial small molecules from soil DNA libraries. J. Mol. Microbiol. Biotechnol. 3l (2001) 301-308
-
(2001)
J. Mol. Microbiol. Biotechnol.
, vol.3 l
, pp. 301-308
-
-
MacNeil, I.A.1
Tiong, C.L.2
Minor, C.3
August, P.R.4
Grossman, T.H.5
Loiacono, K.A.6
Lynch, B.A.7
Phillips, T.8
Narula, S.9
Sundaramoorthi, R.10
Tyler, A.11
Aldredge, T.12
Long, H.13
Gilman, M.14
Holt, D.15
Osburne, M.S.16
-
28
-
-
39149124249
-
Metagenomics of the deep Mediterranean, a warm bathypelagic habitat
-
Martin-Cuadrado A.B., López-Garcia P., Alba J.C., Moreira D., Monticelli L., Strittmatter A., Gottschalk G., and Rodríguez-Valera F. Metagenomics of the deep Mediterranean, a warm bathypelagic habitat. PLoS ONE 9 (2007) e914
-
(2007)
PLoS ONE
, vol.9
-
-
Martin-Cuadrado, A.B.1
López-Garcia, P.2
Alba, J.C.3
Moreira, D.4
Monticelli, L.5
Strittmatter, A.6
Gottschalk, G.7
Rodríguez-Valera, F.8
-
29
-
-
13944259584
-
Genetically modified bacterial strains and novel bacterial artificial chromosome shuttle vectors for constructing environmental libraries and detecting heterologous natural products in multiple expression hosts
-
Martinez A., Kolvek S.J., Yip C.L.T., Hopke J., Brown K.A., MacNeil I.A., and Osburne M.S. Genetically modified bacterial strains and novel bacterial artificial chromosome shuttle vectors for constructing environmental libraries and detecting heterologous natural products in multiple expression hosts. Appl. Environ. Microbiol. 70 (2004) 2452-2463
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 2452-2463
-
-
Martinez, A.1
Kolvek, S.J.2
Yip, C.L.T.3
Hopke, J.4
Brown, K.A.5
MacNeil, I.A.6
Osburne, M.S.7
-
30
-
-
4744348471
-
The science and art of plant-disease diagnosis
-
Mazzola M. The science and art of plant-disease diagnosis. Annu. Rev. Phytopathol. 42 (2004) 35-59
-
(2004)
Annu. Rev. Phytopathol.
, vol.42
, pp. 35-59
-
-
Mazzola, M.1
-
32
-
-
18844481269
-
Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms
-
Rondon M.R., August P.R., Bettermann A.D., Brady S.F., Grossman T.H., Liles M.R., Loiacono K.A., Lynch B.A., MacNeil I.A., Minor C., Tiong C.L., Gilman M., Osburne M.S., Clardy J., Handelsman J., and Goodman R.M. Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms. Appl. Environ. Microbiol. 66 (2000) 2541-2547
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2541-2547
-
-
Rondon, M.R.1
August, P.R.2
Bettermann, A.D.3
Brady, S.F.4
Grossman, T.H.5
Liles, M.R.6
Loiacono, K.A.7
Lynch, B.A.8
MacNeil, I.A.9
Minor, C.10
Tiong, C.L.11
Gilman, M.12
Osburne, M.S.13
Clardy, J.14
Handelsman, J.15
Goodman, R.M.16
-
33
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook J., and Russell D.W. Molecular Cloning, a Laboratory Manual, Third Edition (2001), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
(2001)
Molecular Cloning, a Laboratory Manual, Third Edition
-
-
Sambrook, J.1
Russell, D.W.2
-
34
-
-
0030690924
-
A study of iterative type II polyketide synthases, using bacterial genes cloned from soil DNA: a means to access and use genes from uncultured microorganisms
-
Seow K.T., Meurer G., Gerlitz M., Wendt-Pienkowski E., Hutchinson C.R., and Davies J. A study of iterative type II polyketide synthases, using bacterial genes cloned from soil DNA: a means to access and use genes from uncultured microorganisms. J. Bacteriol. 179 (1997) 7360-7368
-
(1997)
J. Bacteriol.
, vol.179
, pp. 7360-7368
-
-
Seow, K.T.1
Meurer, G.2
Gerlitz, M.3
Wendt-Pienkowski, E.4
Hutchinson, C.R.5
Davies, J.6
-
35
-
-
53949090592
-
Soil metagenomics: exploring and exploiting the soil
-
van Elsas J.D., Trevors J.T., and Jansson J.K. (Eds), CRC Press, Boca Raton USA
-
Sjöling S., Stafford W., and Cowan D.A. Soil metagenomics: exploring and exploiting the soil. In: van Elsas J.D., Trevors J.T., and Jansson J.K. (Eds). Modern Soil Microbiology II (2006), CRC Press, Boca Raton USA
-
(2006)
Modern Soil Microbiology II
-
-
Sjöling, S.1
Stafford, W.2
Cowan, D.A.3
-
36
-
-
85057385909
-
Soil suppressiveness to plant diseases
-
van Elsas J.D., Trevors J.T., and Jansson J.K. (Eds), CRC Press, Boca Raton USA
-
Steinberg C., Edel-Hermann V., Alabouvette C., and Lemanceau P. Soil suppressiveness to plant diseases. In: van Elsas J.D., Trevors J.T., and Jansson J.K. (Eds). Modern Soil Microbiology II (2006), CRC Press, Boca Raton USA
-
(2006)
Modern Soil Microbiology II
-
-
Steinberg, C.1
Edel-Hermann, V.2
Alabouvette, C.3
Lemanceau, P.4
-
38
-
-
1942504388
-
The low-temperature-induced viable-but-nonculturable state affects the virulence of Ralstonia solanacearum biovar 2
-
Van Overbeek L.S., Bergervoet J.H.W., Jacobs F.H.H., and van Elsas J.D. The low-temperature-induced viable-but-nonculturable state affects the virulence of Ralstonia solanacearum biovar 2. Phytopathol. 94 (2004) 463-467
-
(2004)
Phytopathol.
, vol.94
, pp. 463-467
-
-
Van Overbeek, L.S.1
Bergervoet, J.H.W.2
Jacobs, F.H.H.3
van Elsas, J.D.4
-
39
-
-
26844491940
-
Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor
-
Williamson L.L., Borlee B.R., Schloss P.D., Guan C., Allen H.K., and Handelsman J. Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor. Appl. Environ. Microbiol. 71 (2005) 6335-6344
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 6335-6344
-
-
Williamson, L.L.1
Borlee, B.R.2
Schloss, P.D.3
Guan, C.4
Allen, H.K.5
Handelsman, J.6
-
40
-
-
0041620248
-
SEARCHPKS: a program for detection and analysis of polyketide synthase domains
-
Yadav G., Gokhale R.S., and Mohanty D. SEARCHPKS: a program for detection and analysis of polyketide synthase domains. Nucleic Acids Res. 31 (2003) 3654-3658
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3654-3658
-
-
Yadav, G.1
Gokhale, R.S.2
Mohanty, D.3
|