Extraction of methane-oxidizing bacteria from soil particles

FEMS Microbiology Ecology

Volumn 21, Issue 1, 1996, Pages 59-68

  Priemé, Anders ^a,b   Sitaula, J Ileana Bonilla ^b   Klemedtsson, Åsa Kasimir ^c   Bakken, Lars R ^b  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b NORWEGIAN UNIVERSITY OF LIFE SCIENCES   (Norway)

^c IVL SWEDISH ENVIRONMENTAL RESEARCH INSTITUTE   (Sweden)

Author keywords

Bacterial adhesion; Extraction of soil bacteria; Methane oxidation; Nycodenz; Percoll

Indexed keywords

METHANE;

ARTICLE; BACTERIUM ADHERENCE; BACTERIUM ISOLATION; CONTROLLED STUDY; ECOLOGY; EXTRACTION; NONHUMAN; OXIDATION; PRIORITY JOURNAL; SOIL; SOIL MICROFLORA;

BACTERIA (MICROORGANISMS);

EID: 0030248924     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/0168-6496(96)00044-X     Document Type: Article

References (39)

1. [1] Bakken, L.R. and Lindahl, V. (1995) Recovery of bacterial cells from soil. In: Nucleic Acids in the Environment: Methods and Applications (van Elsas, J.D. and Trevors, J.T., Eds.), pp. 9-27. Springer, Berlin.
2. [2] Postma, J., van Elsas, J.D., Govaert, J.M. and van Veen, J.H. (1988) The dynamics of Rhizobium leguminosarum biovar trifolii introduced into soil as determined by immunofluorescence and selective plating techniques. FEMS Microbiol. Ecol. 53, 251-260.
3. [3] Jacobsen, C.S. and Rasmussen, O.F. (1992) Development and application of a new method to extract bacterial DNA from soil based on separation of bacteria from soil with cation-exchange resin. Appl. Environ. Microbiol. 58, 2458-2462.
4. [4] Steffan, R.J., Goksøyr, J., Bej, A.K., and Atlas, R.M. (1988) Recovery of DNA from soils and sediments. Appl. Environ. Microbiol. 54, 2908-2915.
5. [5] Tebbe, C.C. and Vahjen, W. (1993) Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast. Appl. Environ. Microbiol. 59, 2657-2665.
6. [6] Faegri, A., Torsvik, V.L. and Goksøyr, J. (1977) Bacterial and fungal activities in soil: Separation of bacteria and fungi by a rapid fractionated centrifugation technique. Soil Biol. Biochem. 9, 105-112.
7. [7] Bååth, E. (1992) Thymidine incorporation into macromolecules of bacteria extracted from soil by homogenization-centrifugation. Soil Biol. Biochem. 24, 1157-1165.
8. [8] Bååth, E. (1992) Measurement of heavy metal tolerance of soil bacteria using thymidine incorporation into bacteria extracted after homogenization-centrifugation. Soil Biol. Biochem. 24, 1167-1172.
9. [9] Christensen, H., Bakken, L.R. and Olsen, R.A. (1995) Flow cytometric measurements of cell volumes and DNA contents during culture of indigenous soil bacteria. Microb. Ecol. 29, 49-62.
10. [10] Hawksworth, D.L. and Mound, L.A. (1991) Biodiversity databases: the critical significance of collections. In: The Biodiversity of Microorganisms and Invertebrates: its Role in Sustainable Agriculture (Hawksworth, D.L., Ed.), pp. 17-29. Wallingford, U.K.
11. [11] Smith, Z., Stephen, J.R. and Prosser, J.I. (1995) Selective enrichment of ammonia oxidizers from soil. P2-20.33. Abstracts, 7th. Int. Symp. Microb. Ecol., Santos, Brazil.
12. [12] Stephen, J.R., McCaig, A.E., Prosser, J.I. and Embley, T.M. (1995) Diversity of soil and marine B-subgroup chemolithotrophic ammonia oxidizing bacteria detected by 16S rDNA analysis. C1-1.5. Abstracts, 7th. Int. Symp. Microb. Ecol., Santos, Brazil.
13. [13] Keller, M., Goreau, T.J., Wofsy, S.C., Kaplan, W.A. and McElroy, M.B. (1983) Production of nitrous oxide and consumption of methane by forest soils. Geophys. Res. Lett. 10, 1156-1159.
14. [14] Steudler, P.A., Bowden, R.D., Melillo, J.M. and Aber, J.D. (1989) Influence of nitrogen fertilization on methane uptake in temperate forest soils. Nature 341, 314-316.
15. [15] Keller, M., Mitre, M.E. and Stallard, R.F. (1990) Consumption of atmospheric methane in soils of central Panama: Effects of agricultural development. Global Biogeochem. Cycles 4, 21-27.
16. [16] Whalen, S.C. and Reeburgh, W.S. (1990) Consumption of atmospheric methane by tundra soils. Nature 346, 160-162.
17. [17] Striegl, R.G., McConnaughey, T.A., Thorstenson, D.C., Weeks, E.P. and Woodward, J.C. (1992) Consumption of atmospheric methane in desert soils. Nature 357, 145-147.
18. [18] Dobbie, K.E., Smith, K.A., Priemé, A., Christensen, S., Degórska, A. and Orlanski, P. (1996) Effect of land use on the rate of methane uptake by surface soils in northern Europe. Atmos. Environ. 30, 1005-1011.
19. [19] Priemé, A., Christensen, S., Dobbie, K.E. and Smith, K.A. (1996) Slow increase in rate of methane oxidation in soils with time, following land use change from arable agriculture to woodland. Submitted to Soil Biol. Biochem.
20. [20] Schnell, S. and King, G.M. (1995) Stability of methane oxidation capacity to variations in methane and nutrient concentrations. FEMS Microbiol. Ecol. 17, 285-294.
21. [21] Sitaula, B.K. and Bakken, L.R. (1993) Nitrous oxide release from spruce forest soil: Relationships with nitrification, methane uptake, temperature, moisture and fertilization. Soil Biol. Biochem. 25, 1415-1421.
22. [22] Ambus, P. and Christensen, S. (1995) Spatial and seasonal nitrous oxide and methane fluxes in Danish forest-, grassland-, and agroecosystems. J. Environ. Qual. 24, 993-1001.
23. [23] MacDonald, R.M. and Spokes, J.R. (1980) A selective medium for ammonium oxidizing bacteria. FEMS Microbiol. Lett. 8, 143-145.
24. [24] Laurent, T.C., Ogston, A.J.G. and Pertoft, H. (1980) Physical and chemical characterization of Percoll. J. Colloid Interface Sci. 76, 133-143.
25. [25] Sitaula, B.K., Luo, J. and Bakken, L.R. (1992) Rapid analysis of climate gases by wide bore capillary gas chromatography. J. Environ. Qual. 21, 493-496.
26. 4 uptake in a Danish forest soil and its relation to different measurement techniques. Atmos. Environ. 30, 1375-1379.
27. [27] Yamamoto, S., Alcauskas, J.B. and Crozier, T.E. (1976) Solubility of methane in destilled water and seawater. J. Chem. Engineer. Data 21, 78-80.
28. [28] Lindahl, V. and Bakken, L.R. (1995) Evaluation of methods for extraction of bacteria from soil. FEMS Microbiol. Ecol. 16, 135-142.
29. [29] Breland, T.A., and Bakken, L.R. (1991) Microbial growth and N-immobilization in the rhizosphere of barley, Italian ryegras and white clover. Biol. Fert. Soil 12, 154-160.
30. [30] Niepold, F., Conrad, R. and Schlegel, H.G. (1979) Evaluation of the efficiency of extraction for the quantitative estimation of hydrogen bacteria in soil. Antonie van Leeuwenhoek 45, 485-497.
31. [31] Stotzky, G. 1985. Mechanisms of adhesion to clays, with reference to soil systems. In: Bacterial Adhesion (Savage, D.C. and Fletcher, M., Eds.), pp. 195-253. Plenum Press, New York.
32. [32] Roslev, P. and Iversen, N. (1995) Carbon metabolism and potential biomarkers in atmospheric methane oxidizing bacteria. C2-2-1. Abstracts, 7th. Int. Symp. Microb. Ecol., Santos, Brazil.
33. [33] Dörr, H., Katruff, L. and Levin, I. (1993) Soil texture parameterization of the methane uptake in aerated soils. Chemosphere 26, 697-613.
34. [34] Castro, M.S., Melillo, J.M., Steudler, P.A. and Chapman, J.W. (1994) Soil moisture as a predictor of methane uptake by temperate forest soils. Can. J. For. Res. 24, 1805-1810.
35. [35] Schnell, S. and King, G.M. (1994) Mechanistic analysis of ammonium inhibition of atmospheric methane consumption in forest soils. Appl. Environ. Microbiol. 60, 3514-3521.
36. [36] Born, M., Dörr, H. and Levin, I. (1990) Methane consumption in aerated soils of the temperate zone. Tellus 42B, 2-8.
37. [37] Crill, P.M. (1991) Seasonal patterns of methane uptake and carbon dioxide release by a temperate woodland soil. Global Biogeochem. Cycles 5, 319-334.
38. [38] Ojima, D.S., Valentine, D.W., Mosier, A.R., Parton, W.J. and Schimel, D.S. (1993) Effect of land use change in methane oxidation in temperate forest and grassland soils. Chemosphere 26, 675-685.
39. [39] Vargas, R. and Hattori, T. (1986) Protozoan predation of bacterial cells in soil aggregates. FEMS Microbiol. Ecol. 38, 233-242.