DNA barcoding discriminates echinoderm species

Molecular Ecology Resources

Volumn 8, Issue 6, 2008, Pages 1202-1211

  Ward, Robert D ^a   Holmes, Bronwyn H ^a   O'Hara, Tim D ^b  

^a CSIRO   (Australia)

^b MUSEUM VICTORIA   (Australia)

Author keywords

Asteroidea; COI; CoxI; Crinoidea; DNA barcode; Echinodermata; Echinoidea; Holothuroidea; Ophiuroidea

Indexed keywords

AMBLYPNEUSTES; ASTERIAS; CRINOIDEA; ECHINODERMATA; ECHINOIDA; ECHINOIDEA; HOLOTHUROIDEA; OPHIUROIDEA;

EID: 55149103330     PISSN: 1755098X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2008.02332.x     Document Type: Article

References (43)

1. Arndt A, Marquez C, Lambert P, Smith MJ (1996) Molecular phylogeny of eastern Pacific sea cucumbers (Echinodermata: Holothuroidea) based on mitochondrial DNA sequence. Molecular Phylogenetics and Evolution, 6, 425 437.
2. Baker AN (1980) Euryalinid Ophiuroidea (Echinodermata) from Australia, New Zealand, and the south-west Pacific Ocean. New Zealand Journal of Zoology, 7, 11 83.
3. Barrett RDH, Hebert PDN (2005) Identifying spiders through DNA barcodes. Canadian Journal of Zoology, 83, 481 491.
4. Byrne M (2006) Life history diversity and evolution in the Asterinidae. Integrative and Comparative Biology, 46, 243 254.
5. Clare EL, Lim BK, Engstrom MD, Eger JL, Hebert PDN (2007) DNA barcoding of neotropical bats: species identification and discovery within Guyana. Molecular Ecology Notes, 7, 184 190.
6. Costa FO, deWaard JR, Boutillier J, et al 2007) Biological identifications through DNA barcodes: the case of the Crustacea. Canadian Journal of Fisheries and Aquatic Sciences, 64, 272 295.
7. Fell HB (1958) Deep-sea echinoderms of New Zealand. Zoological Publications of the Victoria University Wellington, 24, 1 40.
8. Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 5, 294 299.
9. Hajibabaei M, Janzen DH, Burns JM, Hallwachs W, Hebert PDN (2006) DNA barcodes distinguish species of tropical Lepidoptera. Proceedings of the National Academy of Sciences, USA, 103, 968 971.
10. Harris JD (2003) Can you bank on GenBank? Trends in Ecology & Evolution, 18, 317 319.
11. Hart MW, Podolsky RD (2005) Mitochondrial DNA phylogeny and rates of larval evolution in Macrophiotrix brittlestars. Molecular Phylogenetics and Evolution, 34, 438 447.
12. Hebert PDN, Cywinska A, Ball SL, de Waard JR (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society B: Biological Sciences, 270, 313 322.
13. Hebert PDN, Stoeckle MY, Zemlak TS, Francis CM (2004) Identification of birds through DNA barcodes. Public Library of Science, Biology, 2, 1657 1663.
14. Jeffery CH, Emlet RB, Littlewood DTJ (2003) Phylogeny and evolution of developmental mode in temnopleurid echinoids. Molecular Phylogenetics and Evolution, 28, 99 118.
15. Kerr AM (2001) Phylogeny of the apodan holothurians (Echinodermata) inferred from morphology. Zoological Journal of the Linnean Society, 133, 53 62.
16. Kimura M (1980) A simple method of estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111 120.
17. Knolt KE, Balser EJ, Jaeckle WB, Wray GA (2003) Identification of asteroid genera with species capable of larval cloning. Biological Bulletin, 204, 246 255.
18. McClary DJ, Sewell MA (2003) Hybridization in the sea: gametic and developmental constraints on fertilization in sympatric species of Pseudechinus (Echinodermata: Echinoidea). Journal of Experimental Marine Biology and Ecology, 284, 51 70.
19. Mitchell A (2008) DNA barcoding demystified. Australian Journal of Entomology, 47, 169 173.
20. Mortensen T (1924) Echinoderms of New Zealand and the Auckland-Campbell Islands. II. Ophiuroidea. Videnskabelige Meddelelser Fra Dansk Naturhistorisk Forening, 77, 91 177.
21. Neigel J, Domingo A, Stake J (2007) DNA barcoding as a tool for coral reef conservation. Coral Reefs, 26, 487 499.
22. O'Hara TD, Byrne M, Cisternas PA (2004) The Ophiocoma erinaceus complex: another case of cryptic speciation in echinoderms. In : Proceedings of the 11th International Echinoderm Conference, Munich, Germany, 6-10 October 2003 (eds Heinzeller T, Nebelsick JH pp. 537 542. Balkema, Rotterdam, The Netherlands.
23. O'Loughlin PM, Rowe FEW (2006) A systematic revision of the asterinid genus Aquilonastra O'Loughlin, 2004 (Echinodermata: Asteroidea). Memoirs of Museum Victoria, 63, 257 287.
24. O'Loughlin PM, Waters JM (2004) A molecular and morphological revision of genera of Asterinidae (Echinodermata: Asteroidea). Memoirs of Museum Victoria, 61, 1 40.
25. O'Loughlin PM, Waters JM, Roy MS (2003) A molecular and morphological review of the asterinid, Patiriella gunni (Gray) (Echinodermata: Asteroidae). Memoirs of Museum Victoria, 60, 181 195.
26. Pleijel F, Jondelius U, Norlinder E et al 2008) Phylogenies without roots? A plea for the use of vouchers in molecular phylogenetic studies. Molecular Phylogenetics and Evolution. doi:.
27. Ratnasingham S, Hebert PDN (2007) BOLD: the Barcode of Life Data System (http://www.barcodinglife.org). Molecular Ecology Notes, 7, 355 364.
28. Rowe FEW, Gates J (1995) Echinodermata. In : Zoological Catalogue of Australia 33 (ed. Wells A pp xiii + 510. CSIRO, Melbourne, Australia.
29. Schander C, Willassen E (2005) What can biological barcoding do for marine biology? Marine Biology Research, 1, 79 83.
30. Shearer TL, Coffroth MA (2008) Barcoding corals: limited by interspecific divergence, not intraspecific variation. Molecular Ecology Resources, 8, 247 255.
31. Smith AB, Paterson GLJ, Lafay B (1995) Ophiuroid phylogeny and higher taxonomy: morphological, molecular and palaeontological perspectives. Zoological Journal of the Linnean Society, 114, 213 243.
32. Smith AB, Peterson KJ, Wray G, Littlewood DTJ (2004) From bilateral symmetry to pentaradiality; the phylogeny of hemichordates and echinoderms. In : Assembling the Tree of Life (eds Cracraft J, Donoghue MJ pp. 365 383. Oxford University Press, Oxford, UK.
33. Stockley B, Smith AB, Littlewood T, Lessios HA, Mackenzie-Dodds JA (2005) Phylogenetic relationships of spatangoid sea urchins (Echinoidea): taxon sampling density and congruence between morphological and molecular estimates. Zoologica Scripta, 34, 447 468.
34. Tamura K, Nei M, Kumar S (2004) Prospects for inferring very large phylogenies by using the neighbor-joining method. Proceedings of the National Academy of Sciences, USA, 101, 11030 11035.
35. Tamura K, Dudley J, Nei M, Kumar S (2007) mega4: molecular evolutionary genetics analysis (mega) software version 4.0. Molecular Biology and Evolution, 24, 1596 1599.
36. Ward RD, Holmes BH (2007) An analysis of nucleotide and amino acid variability in the barcode region of cytochrome c oxidase I (cox1) in fishes. Molecular Ecology Notes, 7, 899 907.
37. Ward RD, Woodwark M, Skibinski DOF (1994) A comparison of genetic diversity levels in marine, freshwater and anadromous fish. Journal of Fish Biology, 44, 213 232.
38. Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PDN (2005) Barcoding Australia's fish species. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 360, 1847 1857.
39. Ward RD, Holmes BH, White WT, Last PR (2008) DNA barcoding Australian chondrichthyans: results and potential uses in conservation. Marine and Freshwater Research, 59, 57 71.
40. Wares JP (2001) Biogeography of Asterias: North Atlantic climate change and speciation. Biological Bulletin, 201, 95 103.
41. Waters JM, O'Louglin PM, Roy MS (2004) Molecular systematics of some Indo-Pacific asterinids (Echinodermata: Asteroidae): does taxonomy reflect phylogeny? Molecular Phylogenetics and Evolution, 30, 872 878.
42. Wilson NG, Hunter RL, Lockhart SJ, Halanych KM (2007) Multiple lineages and absence of panmixia in the 'circumpolar' crinoid Promachocrinus kerguelensis from the Atlantic sector of Antarctica. Marine Biology, 152, 895 904.
43. Wray GA (1999) Echinodermata. Spiny-skinned Animals: Sea Urchins, Starfish and their Allies. Available from URL : http://tolweb.org/echinodermata/ 2497/1999.12.14 in The Tree of Life Web Project. http://tolweb.org/.