-
1
-
-
34547708577
-
Genome identification and classification by short oligo arrays
-
Jonassen I, Kim J (eds) Algorithms in Bioinformatics, 4th International Workshop, WABI 2004, Bergen, Norway, September 17-21, 2004, Proceedings. Springer, Berlin
-
Angelov S, Harb B, Kannan S, Khanna S, Kim J, Wang LS (2004) Genome identification and classification by short oligo arrays. In: Jonassen I, Kim J (eds) Algorithms in Bioinformatics, 4th International Workshop, WABI 2004, Bergen, Norway, September 17-21, 2004, Proceedings. Lecture Notes in Computer Science Vol 3240. Springer, Berlin, pp 400-411
-
(2004)
Lecture Notes in Computer Science
, vol.3240
, pp. 400-411
-
-
Angelov, S.1
Harb, B.2
Kannan, S.3
Khanna, S.4
Kim, J.5
Wang, L.S.6
-
3
-
-
0002961523
-
Principles of genealogical concordance in species concepts and biological taxonomy
-
Avise JC, Ball RM (1990) Principles of genealogical concordance in species concepts and biological taxonomy. Oxf Surv Evol Biol 7:45-67
-
(1990)
Oxf Surv Evol Biol
, vol.7
, pp. 45-67
-
-
Avise, J.C.1
Ball, R.M.2
-
4
-
-
0030111437
-
A diagnostic molecular marker for zebra mussels (Dreissena polymorpha) and potentially co-occurring bivalves: Mitochondrial COI
-
Baldwin BS, Black M, Sanjur O, Gustafson R, Lutz RA, Vrijenhoek RC (1996) A diagnostic molecular marker for zebra mussels (Dreissena polymorpha) and potentially co-occurring bivalves: Mitochondrial COI. Mol Mar Biol Biotechnol 5:9-14
-
(1996)
Mol Mar Biol Biotechnol
, vol.5
, pp. 9-14
-
-
Baldwin, B.S.1
Black, M.2
Sanjur, O.3
Gustafson, R.4
Lutz, R.A.5
Vrijenhoek, R.C.6
-
5
-
-
33747075171
-
Estimating diversity of Indo-Pacific coral reef stomatopods through DNA barcoding of stomatopod larvae
-
Barber P, Boyce SL (2006) Estimating diversity of Indo-Pacific coral reef stomatopods through DNA barcoding of stomatopod larvae. Proc R Soc Lond B Biol Sci 273:2053-2061
-
(2006)
Proc R Soc Lond B Biol Sci
, vol.273
, pp. 2053-2061
-
-
Barber, P.1
Boyce, S.L.2
-
7
-
-
33749386605
-
Development and evaluation of a DNA-barcoding approach for the rapid identification of nematodes
-
Bhadury P, Austen MC, Bilton DT, Lambshead PJD, Rogers AD, Smerdon GR (2006) Development and evaluation of a DNA-barcoding approach for the rapid identification of nematodes. Mar Ecol Prog Ser 320:1-9
-
(2006)
Mar Ecol Prog Ser
, vol.320
, pp. 1-9
-
-
Bhadury, P.1
Austen, M.C.2
Bilton, D.T.3
Lambshead, P.J.D.4
Rogers, A.D.5
Smerdon, G.R.6
-
8
-
-
0032916821
-
An ultrasensitive method for detection of single crab larvae (Sesarma reticulatum) using PCR amplification of a highly repetitive DNA sequence
-
Bilodeau AL, Lankford WS, Kim TJ, Felder DL, Neigel JE (1999) An ultrasensitive method for detection of single crab larvae (Sesarma reticulatum) using PCR amplification of a highly repetitive DNA sequence. Mol Ecol 8:683-684
-
(1999)
Mol Ecol
, vol.8
, pp. 683-684
-
-
Bilodeau, A.L.1
Lankford, W.S.2
Kim, T.J.3
Felder, D.L.4
Neigel, J.E.5
-
9
-
-
1942519881
-
The promise of a DNA taxonomy
-
Blaxter ML (2004) The promise of a DNA taxonomy. Proc R Soc Lond B Biol Sci 359:669-679
-
(2004)
Proc R Soc Lond B Biol Sci
, vol.359
, pp. 669-679
-
-
Blaxter, M.L.1
-
10
-
-
33645781099
-
Defining operational taxonomic units using DNA barcode data
-
Blaxter M, Mann J, Chapman T, Thomas F, Whitton C, Floyd R, Abebe E (2005) Defining operational taxonomic units using DNA barcode data. Proc R Soc Lond B Biol Sci 360:1935-1943
-
(2005)
Proc R Soc Lond B Biol Sci
, vol.360
, pp. 1935-1943
-
-
Blaxter, M.1
Mann, J.2
Chapman, T.3
Thomas, F.4
Whitton, C.5
Floyd, R.6
Abebe, E.7
-
11
-
-
0035230036
-
Probe selection algorithms with applications in the analysis of microbial communities
-
Borneman J (2001) Probe selection algorithms with applications in the analysis of microbial communities. Bioinformatics 17:1-9
-
(2001)
Bioinformatics
, vol.17
, pp. 1-9
-
-
Borneman, J.1
-
12
-
-
33744756956
-
Problems with DNA barcodes for species delimitation: 'Ten species' of Astraptes fulgerator reassessed (Lepidoptera : Hriidae)
-
Brower AVZ (2006) Problems with DNA barcodes for species delimitation: 'ten species' of Astraptes fulgerator reassessed (Lepidoptera : Hesperiidae). Systematics and Biodiversity 4:127-132
-
(2006)
Systematics and Biodiversity
, vol.4
, pp. 127-132
-
-
Brower, A.V.Z.1
-
13
-
-
0030302804
-
Recruitment and the local dynamics of open marine populations
-
Caley MJ, Carr MH, Hixon MA, Hughes TP, Jones GP, Menge BA (1996) Recruitment and the local dynamics of open marine populations. Annu Rev Ecol Syst 27:477-500
-
(1996)
Annu Rev Ecol Syst
, vol.27
, pp. 477-500
-
-
Caley, M.J.1
Carr, M.H.2
Hixon, M.A.3
Hughes, T.P.4
Jones, G.P.5
Menge, B.A.6
-
14
-
-
19844379463
-
Challenges and opportunities for pathogen detection using DNA microarrays
-
Call DR (2005) Challenges and opportunities for pathogen detection using DNA microarrays. Crit Rev Microbiol 31:91-99
-
(2005)
Crit Rev Microbiol
, vol.31
, pp. 91-99
-
-
Call, D.R.1
-
15
-
-
33750477634
-
Standard percent DNA sequence difference for insects does not predict species boundaries
-
Cognato AI (2006) Standard percent DNA sequence difference for insects does not predict species boundaries. J Econ Entomol 99:1037-1045
-
(2006)
J Econ Entomol
, vol.99
, pp. 1037-1045
-
-
Cognato, A.I.1
-
16
-
-
0030008369
-
Earliest evolution associated with closure of the Tropical American Seaway
-
Collins LS, Budd AF, Coates AG (1996) Earliest evolution associated with closure of the Tropical American Seaway. Proc Natl Acad Sci USA 93:6069-6072
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 6069-6072
-
-
Collins, L.S.1
Budd, A.F.2
Coates, A.G.3
-
18
-
-
31544454438
-
Scaling of connectivity in marine populations
-
Cowen RK, Paris CB, Srinivasan A (2006) Scaling of connectivity in marine populations. Science 311:522-527
-
(2006)
Science
, vol.311
, pp. 522-527
-
-
Cowen, R.K.1
Paris, C.B.2
Srinivasan, A.3
-
19
-
-
19144362371
-
Microbial community genomics in the ocean
-
DeLong EE (2005) Microbial community genomics in the ocean. Nat Rev Microbiol 3:459-469
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 459-469
-
-
Delong, E.E.1
-
20
-
-
33745595097
-
Using pyrosequencing to shed light on deep mine microbial ecology
-
Edwards RA, Rodriguez-Brito B, Wegley L, Haynes M, Breitbart M, Peterson DM, Saar MO, Alexander S, Alexander EC, Rohwer F (2006) Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics 7:57
-
(2006)
BMC Genomics
, vol.7
, pp. 57
-
-
Edwards, R.A.1
Rodriguez-Brito, B.2
Wegley, L.3
Haynes, M.4
Breitbart, M.5
Peterson, D.M.6
Saar, M.O.7
Alexander, S.8
Alexander, E.C.9
Rohwer, F.10
-
21
-
-
33646891565
-
CO1 phylogenies in diploblasts and the 'Barcoding of Life'-are we sequencing a suboptimal partition?
-
Erpenbeck D, Hooper JNA, Worheide G (2006) CO1 phylogenies in diploblasts and the 'Barcoding of Life'-are we sequencing a suboptimal partition? Mol Ecol Notes 6:550-553
-
(2006)
Mol Ecol Notes
, vol.6
, pp. 550-553
-
-
Erpenbeck, D.1
Hooper, J.N.A.2
Worheide, G.3
-
22
-
-
0036010841
-
Molecular barcodes for soil nematode identification
-
Floyd R, Abebe E, Papert A, Blaxter M (2002) Molecular barcodes for soil nematode identification. Mol Ecol 11:839-850
-
(2002)
Mol Ecol
, vol.11
, pp. 839-850
-
-
Floyd, R.1
Abebe, E.2
Papert, A.3
Blaxter, M.4
-
23
-
-
0028528103
-
DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
-
Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol 3:294-299
-
(1994)
Mol Mar Biol Biotechnol
, vol.3
, pp. 294-299
-
-
Folmer, O.1
Black, M.2
Hoeh, W.3
Lutz, R.4
Vrijenhoek, R.5
-
25
-
-
0842322955
-
Species-level paraphyly and polyphyly: Frequency, causes, and consequences with insights from animal mitochondrial DNA
-
Funk DJ, Omland KE (2003) Species-level paraphyly and polyphyly: Frequency, causes, and consequences with insights from animal mitochondrial DNA. Annual Review of Ecology, Evolution and Systematics 34:397-423
-
(2003)
Annual Review of Ecology, Evolution and Systematics
, vol.34
, pp. 397-423
-
-
Funk, D.J.1
Omland, K.E.2
-
26
-
-
0038043705
-
Avoiding current oversights in marine reserve design
-
Gaines SD, Gaylord B, Largier JL (2003) Avoiding current oversights in marine reserve design. Ecol Appl 13:S32-S46
-
(2003)
Ecol Appl
, vol.13
-
-
Gaines, S.D.1
Gaylord, B.2
Largier, J.L.3
-
27
-
-
0041520962
-
Long-term region-wide declines in Caribbean corals
-
Gardner TA, Cote IM, Gill JA, Grant A, Watkinson AR (2003) Long-term region-wide declines in Caribbean corals. Science 301:958-960
-
(2003)
Science
, vol.301
, pp. 958-960
-
-
Gardner, T.A.1
Cote, I.M.2
Gill, J.A.3
Grant, A.4
Watkinson, A.R.5
-
28
-
-
30944439625
-
Marine reserves exploit population structure and life history in potentially improving fisheries yields
-
Gaylord B, Gaines SD, Siegel DA, Carr MH (2005) Marine reserves exploit population structure and life history in potentially improving fisheries yields. Ecol Appl 15:2180-2191
-
(2005)
Ecol Appl
, vol.15
, pp. 2180-2191
-
-
Gaylord, B.1
Gaines, S.D.2
Siegel, D.A.3
Carr, M.H.4
-
29
-
-
0020262474
-
Dispersed repetitive sequences in eukaryotic genomes and their possible biological significance
-
Georgiev GP, Kramerov DA, Ryskov AP, Skryabin KG, Lukanidin EM (1982) Dispersed repetitive sequences in eukaryotic genomes and their possible biological significance. Cold Spring Harbor Symp Quant Biol 47:1109-1121
-
(1982)
Cold Spring Harbor Symp Quant Biol
, vol.47
, pp. 1109-1121
-
-
Georgiev, G.P.1
Kramerov, D.A.2
Ryskov, A.P.3
Skryabin, K.G.4
Lukanidin, E.M.5
-
30
-
-
33646477730
-
Molecular detection of marine invertebrate larvae
-
Goffredi SK, Jones WJ, Scholin CA, Marin R, Vrijenhoek RC (2006) Molecular detection of marine invertebrate larvae. Mar Biotechnol 8:149-160
-
(2006)
Mar Biotechnol
, vol.8
, pp. 149-160
-
-
Goffredi, S.K.1
Jones, W.J.2
Scholin, C.A.3
Marin, R.4
Vrijenhoek, R.C.5
-
31
-
-
39049194278
-
Mating trials validate the use of DNA barcoding to reveal cryptic speciation of a marine bryozoan taxon
-
Gómez A, Wright PJ, Lunt DH, Cancino JM, Carvalho GR, Hughes RN (2007) Mating trials validate the use of DNA barcoding to reveal cryptic speciation of a marine bryozoan taxon. Proc R Soc Lond B Biol Sci 274:199-207
-
(2007)
Proc R Soc Lond B Biol Sci
, vol.274
, pp. 199-207
-
-
Gómez, A.1
Wright, P.J.2
Lunt, D.H.3
Cancino, J.M.4
Carvalho, G.R.5
Hughes, R.N.6
-
32
-
-
12444339913
-
Mitochondrial evolution and phylogeography in the hydrozoan Obelia geniculata (Cnidaria)
-
Govindarajan AF, Halanych KK, Cunningham CW (2005) Mitochondrial evolution and phylogeography in the hydrozoan Obelia geniculata (Cnidaria). Mar Biol 146:213-222
-
(2005)
Mar Biol
, vol.146
, pp. 213-222
-
-
Govindarajan, A.F.1
Halanych, K.K.2
Cunningham, C.W.3
-
33
-
-
0038381864
-
Dispersal potential of marine invertebrates in diverse habitats
-
Grantham BA, Eckert GL, Shanks AL (2003) Dispersal potential of marine invertebrates in diverse habitats. Ecol Appl 13:S108-S116
-
(2003)
Ecol Appl
, vol.13
-
-
Grantham, B.A.1
Eckert, G.L.2
Shanks, A.L.3
-
34
-
-
32244434954
-
DNA barcodes distinguish species of tropical Lepidoptera
-
Hajibabaei M, Janzen DH, Burns JM, Hallwachs W, Hebert PDN (2006) DNA barcodes distinguish species of tropical Lepidoptera. Proc Natl Acad Sci USA 103:968-971
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 968-971
-
-
Hajibabaei, M.1
Janzen, D.H.2
Burns, J.M.3
Hallwachs, W.4
Hebert, P.D.N.5
-
35
-
-
77951278752
-
Proposed Standards for BARCODE Records in INSSC (BRIs) Database Working Group
-
Hanner R (2005) Proposed Standards for BARCODE Records in INSSC (BRIs) Database Working Group, Consortium for the Barcode of Life, http://www. barcoding.si.edu/
-
(2005)
Consortium for the Barcode of Life
-
-
Hanner, R.1
-
36
-
-
0034479388
-
Single-step species identification of bivalve larvae using multiplex polymerase chain reaction
-
Hare MP, Palumbi SR, Butman CA (2000) Single-step species identification of bivalve larvae using multiplex polymerase chain reaction. Mar Biol 137:953-961
-
(2000)
Mar Biol
, vol.137
, pp. 953-961
-
-
Hare, M.P.1
Palumbi, S.R.2
Butman, C.A.3
-
37
-
-
0042531561
-
Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species
-
Hebert PDN, Ratnasingham S, deWaard JR (2003a) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc R Soc Lond B Biol Sci 270:S96-S99
-
(2003)
Proc R Soc Lond B Biol Sci
, vol.270
-
-
Hebert, P.D.N.1
Ratnasingham, S.2
Dewaard, J.R.3
-
40
-
-
6944255373
-
Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator
-
Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W (2004b) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc Natl Acad Sci USA 101:14812-14817
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 14812-14817
-
-
Hebert, P.D.N.1
Penton, E.H.2
Burns, J.M.3
Janzen, D.H.4
Hallwachs, W.5
-
42
-
-
33645574750
-
No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation
-
Hellberg ME (2006) No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation. BMC Evol Biol 6:24
-
(2006)
BMC Evol Biol
, vol.6
, pp. 24
-
-
Hellberg, M.E.1
-
43
-
-
11144276496
-
Global phylogeography of Cassiopea (Scyphozoa : RRhizostomeae): Molecular evidence for cryptic species and multiple invasions of the Hawaiian Islands
-
Holland BS, Dawson MN, Crow GL, Hofmann DK (2004) Global phylogeography of Cassiopea (Scyphozoa : Rhizostomeae): molecular evidence for cryptic species and multiple invasions of the Hawaiian Islands. Mar Biol 145:1119-1128
-
(2004)
Mar Biol
, vol.145
, pp. 1119-1128
-
-
Holland, B.S.1
Dawson, M.N.2
Crow, G.L.3
Hofmann, D.K.4
-
45
-
-
2542503875
-
New mitochondrial DNA data affirm the importance of Pleistocene speciation in North American birds
-
Johnson NK, Cicero C (2004) New mitochondrial DNA data affirm the importance of Pleistocene speciation in North American birds. Evolution 58:1122-1130
-
(2004)
Evolution
, vol.58
, pp. 1122-1130
-
-
Johnson, N.K.1
Cicero, C.2
-
47
-
-
0027332730
-
Sibling Species in the Sea
-
Knowlton N (1993) Sibling Species in the Sea. Annu Rev Ecol Syst 24:189-216
-
(1993)
Annu Rev Ecol Syst
, vol.24
, pp. 189-216
-
-
Knowlton, N.1
-
48
-
-
0035826704
-
The future of coral reefs
-
Knowlton N (2001) The future of coral reefs. Proc Natl Acad Sci USA 98:5419-5425
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 5419-5425
-
-
Knowlton, N.1
-
49
-
-
0034803844
-
Cryptic speciation in a high gene flow scenario in the oviparous marine sponge Chondrosia reniformis
-
Lazoski C, Sole-Cava AM, Boury-Esnault N, Klautau M, Russo CAM (2001) Cryptic speciation in a high gene flow scenario in the oviparous marine sponge Chondrosia reniformis. Mar Biol 139:421-429
-
(2001)
Mar Biol
, vol.139
, pp. 421-429
-
-
Lazoski, C.1
Sole-Cava, A.M.2
Boury-Esnault, N.3
Klautau, M.4
Russo, C.A.M.5
-
50
-
-
33745829090
-
Relationship between morphological taxonomy and molecular divergence within Crustacea: Proposal of a molecular threshold to help species delimitation
-
Lefebure T, Douady CJ, Gouy M, Gibert J (2006) Relationship between morphological taxonomy and molecular divergence within Crustacea: Proposal of a molecular threshold to help species delimitation. Mol Phylogenet Evol 40:435-447
-
(2006)
Mol Phylogenet Evol
, vol.40
, pp. 435-447
-
-
Lefebure, T.1
Douady, C.J.2
Gouy, M.3
Gibert, J.4
-
51
-
-
0037296612
-
The intellectual content of taxonomy: A comment on DNA taxonomy
-
Lipscomb D, Platnick N, Wheeler Q (2003) The intellectual content of taxonomy: a comment on DNA taxonomy. Trends Ecol Evol 18:65-66
-
(2003)
Trends Ecol Evol
, vol.18
, pp. 65-66
-
-
Lipscomb, D.1
Platnick, N.2
Wheeler, Q.3
-
52
-
-
0033006003
-
Allelic discrimination using fluorogenic probes and the 5 ' nuclease assay
-
Livak KJ (1999) Allelic discrimination using fluorogenic probes and the 5 ' nuclease assay. Genet Anal Biomol Eng 14:143-149
-
(1999)
Genet Anal Biomol Eng
, vol.14
, pp. 143-149
-
-
Livak, K.J.1
-
53
-
-
0028834086
-
Oligonucleotides with fluorescent dyes at oppposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization
-
Livak KJ, Flood SJA, Marmaro J, Giusti W, Deetz K (1995) Oligonucleotides with fluorescent dyes at oppposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization. PCR Methods & Applications 4:357-362
-
(1995)
PCR Methods & Applications
, vol.4
, pp. 357-362
-
-
Livak, K.J.1
Flood, S.J.A.2
Marmaro, J.3
Giusti, W.4
Deetz, K.5
-
54
-
-
1942455410
-
The role of taxonomy in species conservation
-
Mace GM (2004) The role of taxonomy in species conservation. Philos Trans R Soc Lond B 359:711-719
-
(2004)
Philos Trans R Soc Lond B
, vol.359
, pp. 711-719
-
-
MacE, G.M.1
-
55
-
-
0033520728
-
PCR amplification of a middle repetitive element detects larval stone crabs (Crustacea: Decapoda: Menippidae) in estuarine plankton samples
-
MaKinster JG, Roberts JE, Felder DL, Chlan CA, Bourdreaux M, Bilodeau AL, Neigel JE (1999) PCR amplification of a middle repetitive element detects larval stone crabs (Crustacea: Decapoda: Menippidae) in estuarine plankton samples. Mar Ecol Prog Ser 188:161-168
-
(1999)
Mar Ecol Prog Ser
, vol.188
, pp. 161-168
-
-
Makinster, J.G.1
Roberts, J.E.2
Felder, D.L.3
Chlan, C.A.4
Bourdreaux, M.5
Bilodeau, A.L.6
Neigel, J.E.7
-
56
-
-
29144517946
-
Reverse taxonomy: An approach towards determining the diversity of meiobenthic organisms based on ribosomal RNA signature sequences
-
Markmann M, Tautz D (2005) Reverse taxonomy: an approach towards determining the diversity of meiobenthic organisms based on ribosomal RNA signature sequences. Proc R Soc Lond B Biol Sci 360:1917-1924
-
(2005)
Proc R Soc Lond B Biol Sci
, vol.360
, pp. 1917-1924
-
-
Markmann, M.1
Tautz, D.2
-
57
-
-
0027308854
-
Body size, metabolic-rate, generation time, and the molecular clock
-
Martin AP, Palumbi SR (1993) Body size, metabolic-rate, generation time, and the molecular clock. Proc Natl Acad Sci USA 90:4087-4091
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 4087-4091
-
-
Martin, A.P.1
Palumbi, S.R.2
-
58
-
-
29144435034
-
A likelihood ratio test for species membership based on DNA sequence data
-
Matz MV, Nielsen R (2005) A likelihood ratio test for species membership based on DNA sequence data. Proc R Soc Lond B Biol Sci 360:1969-1974
-
(2005)
Proc R Soc Lond B Biol Sci
, vol.360
, pp. 1969-1974
-
-
Matz, M.V.1
Nielsen, R.2
-
59
-
-
0036947759
-
The near future of coral reefs
-
McClanahan TR (2002) The near future of coral reefs. Environ Conserv 29:460-483
-
(2002)
Environ Conserv
, vol.29
, pp. 460-483
-
-
McClanahan, T.R.1
-
61
-
-
0000725958
-
Marine speciation, tectonics and sea-level changes in southeast Asia
-
McManus J (1985) Marine speciation, tectonics and sea-level changes in southeast Asia. Proc 5th Int Coral Reef Congr 4:133-138
-
(1985)
Proc 5th Int Coral Reef Congr
, vol.4
, pp. 133-138
-
-
McManus, J.1
-
62
-
-
29144473686
-
DNA barcoding: Error rates based on comprehensive sampling
-
Meyer CP, Paulay G (2005) DNA barcoding: Error rates based on comprehensive sampling. PLoS Biology 3:2229-2238
-
(2005)
PLoS Biology
, vol.3
, pp. 2229-2238
-
-
Meyer, C.P.1
Paulay, G.2
-
63
-
-
0035684933
-
Marine biodiversity and the need for systematic inventories
-
Mikkelsen PM, Cracraft J (2001) Marine biodiversity and the need for systematic inventories. Bull Mar Sci 69:525-534
-
(2001)
Bull Mar Sci
, vol.69
, pp. 525-534
-
-
Mikkelsen, P.M.1
Cracraft, J.2
-
64
-
-
8844224149
-
DNA barcoding: Promise and pitfalls
-
Moritz C, Cicero C (2004) DNA barcoding: Promise and pitfalls. PLoS Biology 2:1529-1531
-
(2004)
PLoS Biology
, vol.2
, pp. 1529-1531
-
-
Moritz, C.1
Cicero, C.2
-
65
-
-
27744604609
-
Sand DNA - A genetic library of life at the water's edge
-
Naviaux RK, Good B, McPherson JD, Steffen DL, Markusic D, Ransom B, Corbeil J (2005) Sand DNA - a genetic library of life at the water's edge. Mar Ecol Prog Ser 301:9-22
-
(2005)
Mar Ecol Prog Ser
, vol.301
, pp. 9-22
-
-
Naviaux, R.K.1
Good, B.2
McPherson, J.D.3
Steffen, D.L.4
Markusic, D.5
Ransom, B.6
Corbeil, J.7
-
66
-
-
0038381829
-
Species-area relationships and marine conservation
-
Neigel JE (2003) Species-area relationships and marine conservation. Ecol Appl 13:S138-S145
-
(2003)
Ecol Appl
, vol.13
-
-
Neigel, J.E.1
-
67
-
-
0002267691
-
Phylogenetic relationships of mitochondrial DNA under various demographic models of speciation
-
Academic Press New York
-
Neigel JE, Avise JC (1986) Phylogenetic relationships of mitochondrial DNA under various demographic models of speciation. In: Karlin S, Nevo E (eds) Evolutionary Processes and Theory. Academic Press, New York, pp 515-534
-
(1986)
Evolutionary Processes and Theory
, pp. 515-534
-
-
Neigel, J.E.1
Avise, J.C.2
Karlin, S.3
Nevo, E.4
-
68
-
-
33644605459
-
Statistical approaches for DNA barcoding
-
Nielsen R, Matz M (2006) Statistical approaches for DNA barcoding. Syst Biol 55:162-169
-
(2006)
Syst Biol
, vol.55
, pp. 162-169
-
-
Nielsen, R.1
Matz, M.2
-
69
-
-
21144431860
-
How to census marine life: Ocean realm field projects
-
O'Dor R, Gallardo VA (2005) How to census marine life: ocean realm field projects. Sci Mar 69:181-199
-
(2005)
Sci Mar
, vol.69
, pp. 181-199
-
-
O'Dor, R.1
Gallardo, V.A.2
-
70
-
-
0042743754
-
Global trajectories of the long-term decline of coral reef ecosystems
-
Pandolfi JM, Bradbury RH, Sala E, Hughes TP, Bjorndal KA, Cooke RG, McArdle D, McClenachan L, Newman MJH, Paredes G, Warner RR, Jackson JBC (2003) Global trajectories of the long-term decline of coral reef ecosystems. Science 301:955-958
-
(2003)
Science
, vol.301
, pp. 955-958
-
-
Pandolfi, J.M.1
Bradbury, R.H.2
Sala, E.3
Hughes, T.P.4
Bjorndal, K.A.5
Cooke, R.G.6
McArdle, D.7
McClenachan, L.8
Newman, M.J.H.9
Paredes, G.10
Warner, R.R.11
Jackson, J.B.C.12
-
71
-
-
4644224619
-
The power and perils of 'molecular taxonomy': A case study of eyeless and endangered Cicurina (Araneae : Dctynidae) from Texas caves
-
Paquin P, Hedin M (2004) The power and perils of 'molecular taxonomy': a case study of eyeless and endangered Cicurina (Araneae : Dictynidae) from Texas caves. Mol Ecol 13:3239-3255
-
(2004)
Mol Ecol
, vol.13
, pp. 3239-3255
-
-
Paquin, P.1
Hedin, M.2
-
72
-
-
33750460245
-
MtDNA barcode identification of fish larvae in the southern Great Barrier Reef, Australia
-
Pegg G, Sinclair B, Briskey L, Aspden W (2006) MtDNA barcode identification of fish larvae in the southern Great Barrier Reef, Australia. Sci Mar 70S2:7-12
-
(2006)
Sci Mar
, vol.702
, pp. 7-12
-
-
Pegg, G.1
Sinclair, B.2
Briskey, L.3
Aspden, W.4
-
73
-
-
4744354028
-
Nematode molecular diagnostics: From bands to barcodes
-
Powers T (2004) Nematode molecular diagnostics: From bands to barcodes. Annu Rev Phytopahtol 42:367-383
-
(2004)
Annu Rev Phytopahtol
, vol.42
, pp. 367-383
-
-
Powers, T.1
-
76
-
-
0034211030
-
The evolution of endemism in insular Pacific faunas: Coral-dwelling stomatopods
-
Reaka-Kudla ML (2000) The evolution of endemism in insular Pacific faunas: coral-dwelling stomatopods. Journal of Crustacean Biology 20:56-70
-
(2000)
Journal of Crustacean Biology
, vol.20
, pp. 56-70
-
-
Reaka-Kudla, M.L.1
-
77
-
-
0036615598
-
Optimization of oligonucleotide-based DNA microarrays
-
Relogio A, Schwager C, Richter A, Ansorge W, Valcarcel J (2002) Optimization of oligonucleotide-based DNA microarrays. Nucl Acids Res 30:e51
-
(2002)
Nucl Acids Res
, vol.30
, pp. 51
-
-
Relogio, A.1
Schwager, C.2
Richter, A.3
Ansorge, W.4
Valcarcel, J.5
-
79
-
-
33748371658
-
Assessing the use of the mitochondrial cox1 marker for use in DNA barcoding of red algae (Rhodophyta)
-
Robba L, Russell SJ, Barker GL, Brodie J (2006) Assessing the use of the mitochondrial cox1 marker for use in DNA barcoding of red algae (Rhodophyta). Am J Bot 93:1101-1108
-
(2006)
Am J Bot
, vol.93
, pp. 1101-1108
-
-
Robba, L.1
Russell, S.J.2
Barker, G.L.3
Brodie, J.4
-
80
-
-
0030717385
-
Connectivity and management of Caribbean coral reefs
-
Roberts CM (1997) Connectivity and management of Caribbean coral reefs. Science 278:1454-1457
-
(1997)
Science
, vol.278
, pp. 1454-1457
-
-
Roberts, C.M.1
-
81
-
-
0037083646
-
Marine biodiversity hotspots and conservation priorities for tropical reefs
-
Roberts CM, McClean CJ, Veron JEN, Hawkins JP, Allen GR, McAllister DE, Mittermeier CG, Schueler FW, Spalding M, Wells F, Vynne C, Werner TB (2002) Marine biodiversity hotspots and conservation priorities for tropical reefs. Science 295:1280-1284
-
(2002)
Science
, vol.295
, pp. 1280-1284
-
-
Roberts, C.M.1
McClean, C.J.2
Veron, J.E.N.3
Hawkins, J.P.4
Allen, G.R.5
McAllister, D.E.6
Mittermeier, C.G.7
Schueler, F.W.8
Spalding, M.9
Wells, F.10
Vynne, C.11
Werner, T.B.12
-
82
-
-
0029668299
-
Evolution of scleractinian corals inferred from molecular systematics
-
Romano SL, Palumbi SR (1996) Evolution of scleractinian corals inferred from molecular systematics. Science 271:640-642
-
(1996)
Science
, vol.271
, pp. 640-642
-
-
Romano, S.L.1
Palumbi, S.R.2
-
83
-
-
33748939768
-
DNA barcoding evolves into the familiar
-
Rubinoff D (2006) DNA barcoding evolves into the familiar. Conserv Biol 20:1548-1549
-
(2006)
Conserv Biol
, vol.20
, pp. 1548-1549
-
-
Rubinoff, D.1
-
84
-
-
33645782783
-
Applying DNA barcoding to red macroalgae: A preliminary appraisal holds promise for future applications
-
Saunders GW (2005) Applying DNA barcoding to red macroalgae: a preliminary appraisal holds promise for future applications. Proc R Soc Lond B Biol Sci 360:1879-1888
-
(2005)
Proc R Soc Lond B Biol Sci
, vol.360
, pp. 1879-1888
-
-
Saunders, G.W.1
-
85
-
-
27944489231
-
What can biological barcoding do for marine biology?
-
Schander C, Willassen E (2005) What can biological barcoding do for marine biology?. Mar Biol Res 1:79-83
-
(2005)
Mar Biol Res
, vol.1
, pp. 79-83
-
-
Schander, C.1
Willassen, E.2
-
86
-
-
0037058998
-
Conflict between nuclear and mitochondrial DNA phylogenies of a recent species radiation: What mtDNA reveals and conceals about modes of speciation in Hawaiian crickets
-
Shaw KL (2002) Conflict between nuclear and mitochondrial DNA phylogenies of a recent species radiation: What mtDNA reveals and conceals about modes of speciation in Hawaiian crickets. Proc Natl Acad Sci USA 99:16122-16127
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 16122-16127
-
-
Shaw, K.L.1
-
87
-
-
32644446871
-
Genetic identification of Caribbean scleractinian coral recruits at the Flower Garden Banks and the Florida Keys
-
Shearer TL, Coffroth MA (2006) Genetic identification of Caribbean scleractinian coral recruits at the Flower Garden Banks and the Florida Keys. Mar Ecol Prog Ser 306:133-142
-
(2006)
Mar Ecol Prog Ser
, vol.306
, pp. 133-142
-
-
Shearer, T.L.1
Coffroth, M.A.2
-
88
-
-
0036897723
-
Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria)
-
Shearer TL, Van Oppen MJH, Romano SL, Worheide G (2002) Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). Mol Ecol 11:2475-2487
-
(2002)
Mol Ecol
, vol.11
, pp. 2475-2487
-
-
Shearer, T.L.1
Van Oppen, M.J.H.2
Romano, S.L.3
Worheide, G.4
-
89
-
-
33845571460
-
DNA identification of gut contents of large pelagic fishes
-
Smith PJ, McVeagh SM, Allain V, Sanchez C (2005) DNA identification of gut contents of large pelagic fishes. J Fish Biol 67:1178-1183
-
(2005)
J Fish Biol
, vol.67
, pp. 1178-1183
-
-
Smith, P.J.1
McVeagh, S.M.2
Allain, V.3
Sanchez, C.4
-
90
-
-
0034580320
-
Stage structure, density dependence and the efficacy of marine reserves
-
St Mary CM, Osenberg CW, Frazer TK, Lindberg WJ (2000) Stage structure, density dependence and the efficacy of marine reserves. Bull Mar Sci 66:675-690
-
(2000)
Bull Mar Sci
, vol.66
, pp. 675-690
-
-
St Mary, C.M.1
Osenberg, C.W.2
Frazer, T.K.3
Lindberg, W.J.4
-
92
-
-
33645754280
-
Microcoding: The second step in DNA barcoding
-
Summerbell RC, Levesque CA, Seifert KA, Bovers M, Fell JW, Diaz MR, Boekhout T, de Hoog GS, Stalpers J, Crous PW (2005) Microcoding: the second step in DNA barcoding. Proc R Soc Lond B Biol Sci 360:1897-1903
-
(2005)
Proc R Soc Lond B Biol Sci
, vol.360
, pp. 1897-1903
-
-
Summerbell, R.C.1
Levesque, C.A.2
Seifert, K.A.3
Bovers, M.4
Fell, J.W.5
Diaz, M.R.6
Boekhout, T.7
De Hoog, G.S.8
Stalpers, J.9
Crous, P.W.10
-
93
-
-
33644692952
-
Metagenomics: DNA sequencing of environmental samples
-
Tringe SG, Rubin EM (2005) Metagenomics: DNA sequencing of environmental samples. Nat Rev Genet 6:805-814
-
(2005)
Nat Rev Genet
, vol.6
, pp. 805-814
-
-
Tringe, S.G.1
Rubin, E.M.2
-
94
-
-
33646928383
-
Application of real-time PCR for simultaneous identification and quantification of larval abalone
-
Vadopalas B, Bouma JV, Jackels CR, Friedman CS (2006) Application of real-time PCR for simultaneous identification and quantification of larval abalone. J Exp Mar Biol Ecol 334:219-228
-
(2006)
J Exp Mar Biol Ecol
, vol.334
, pp. 219-228
-
-
Vadopalas, B.1
Bouma, J.V.2
Jackels, C.R.3
Friedman, C.S.4
-
95
-
-
33750203159
-
Conservation genetics and the resilience of reef-building corals
-
van Oppen MJH, Gates RD (2006) Conservation genetics and the resilience of reef-building corals. Mol Ecol 15:3863-3883
-
(2006)
Mol Ecol
, vol.15
, pp. 3863-3883
-
-
Van Oppen, M.J.H.1
Gates, R.D.2
-
96
-
-
0022980133
-
Nuclear and mitochondrial DNA comparisons reveal extreme rate variation in the molecular clock
-
Vawter L, Brown WM (1986) Nuclear and mitochondrial DNA comparisons reveal extreme rate variation in the molecular clock. Science 234:194-196
-
(1986)
Science
, vol.234
, pp. 194-196
-
-
Vawter, L.1
Brown, W.M.2
-
97
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu DY, Paulsen I, Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas MW, Nealson K, White O, Peterson J, Hoffman J, Parsons R, Baden-Tillson H, Pfannkoch C, Rogers YH, Smith HO (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
Wu, D.Y.7
Paulsen, I.8
Nelson, K.E.9
Nelson, W.10
Fouts, D.E.11
Levy, S.12
Knap, A.H.13
Lomas, M.W.14
Nealson, K.15
White, O.16
Peterson, J.17
Hoffman, J.18
Parsons, R.19
Baden-Tillson, H.20
Pfannkoch, C.21
Rogers, Y.H.22
Smith, H.O.23
more..
-
98
-
-
32244439604
-
DNA barcoding Australia's fish species
-
Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PDN (2005) DNA barcoding Australia's fish species. Proc R Soc Lond B Biol Sci 360:1847-1857
-
(2005)
Proc R Soc Lond B Biol Sci
, vol.360
, pp. 1847-1857
-
-
Ward, R.D.1
Zemlak, T.S.2
Innes, B.H.3
Last, P.R.4
Hebert, P.D.N.5
-
99
-
-
19944420862
-
A quick method for species identification of Japanese eel (Anguilla japonica) using real-time PCR: An onboard application for use during sampling surveys
-
Watanabe S, Minegishi Y, Yoshinaga T, Aoyama J, Tsukamoto K (2004) A quick method for species identification of Japanese eel (Anguilla japonica) using real-time PCR: An onboard application for use during sampling surveys. Mar Biotechnol 6:566-574
-
(2004)
Mar Biotechnol
, vol.6
, pp. 566-574
-
-
Watanabe, S.1
Minegishi, Y.2
Yoshinaga, T.3
Aoyama, J.4
Tsukamoto, K.5
-
101
-
-
33646589850
-
Losing the plot: DNA "barcodes" and taxonomy
-
Wheeler QD (2005) Losing the plot: DNA "barcodes" and taxonomy. Cladistics 21:405-407
-
(2005)
Cladistics
, vol.21
, pp. 405-407
-
-
Wheeler, Q.D.1
-
102
-
-
1642297400
-
Myth of the molecule: DNA barcodes for species cannot replace morphology for identification and classification
-
Will KW, Rubinoff D (2004) Myth of the molecule: DNA barcodes for species cannot replace morphology for identification and classification. Cladistics 20:47-55
-
(2004)
Cladistics
, vol.20
, pp. 47-55
-
-
Will, K.W.1
Rubinoff, D.2
-
103
-
-
29144475077
-
The perils of DNA barcoding and the need for integrative taxonomy
-
Will KW, Mishler BD, Wheeler QD (2005) The perils of DNA barcoding and the need for integrative taxonomy. Syst Biol :54
-
(2005)
Syst Biol
, pp. 54
-
-
Will, K.W.1
Mishler, B.D.2
Wheeler, Q.D.3
-
104
-
-
0023462635
-
Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs
-
Wolfe KH, Li WH, Sharp PM (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci USA 84:9054-9058
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 9054-9058
-
-
Wolfe, K.H.1
Li, W.H.2
Sharp, P.M.3
|