메뉴 건너뛰기




Volumn 381, Issue 2, 2008, Pages 222-229

Molecular and structural characterization of HIV-1 subtype B Brazilian isolates with GWGR tetramer at the tip of the V3-loop

Author keywords

3D structure; CCR5; Coreceptor; CXCR4; GWGR; HIV 1; V3 loop

Indexed keywords

CHEMOKINE RECEPTOR CCR5; CHEMOKINE RECEPTOR CXCR4; TETRAMER; VIRUS PROTEIN;

EID: 54549086451     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2008.08.029     Document Type: Article
Times cited : (16)

References (41)
  • 1
    • 0033012398 scopus 로고    scopus 로고
    • Chemokine receptors as HIV-1 coreceptors: roles in viral entry, tropism, and disease
    • Berger E.A., Murphy P.M., and Farber J.M. Chemokine receptors as HIV-1 coreceptors: roles in viral entry, tropism, and disease. Annu. Rev. Immunol. 17 (1999) 657-700
    • (1999) Annu. Rev. Immunol. , vol.17 , pp. 657-700
    • Berger, E.A.1    Murphy, P.M.2    Farber, J.M.3
  • 2
    • 0027154014 scopus 로고
    • A single amino acid substitution in the V1 loop of human immunodeficiency virus type 1 gp120 alters cellular tropism
    • Boyd M.T., Simpson G.R., Cann A.J., Johnson M.A., and Weiss R.A. A single amino acid substitution in the V1 loop of human immunodeficiency virus type 1 gp120 alters cellular tropism. J. Virol. 67 6 (1993) 3649-3652
    • (1993) J. Virol. , vol.67 , Issue.6 , pp. 3649-3652
    • Boyd, M.T.1    Simpson, G.R.2    Cann, A.J.3    Johnson, M.A.4    Weiss, R.A.5
  • 3
    • 0042511005 scopus 로고    scopus 로고
    • A graph-theory algorithm for rapid protein side-chain prediction
    • Canutescu A.A., Shelenkov A.A., and Dunbrack Jr. R.L. A graph-theory algorithm for rapid protein side-chain prediction. Protein. Sci. 12 9 (2003) 2001-2014
    • (2003) Protein. Sci. , vol.12 , Issue.9 , pp. 2001-2014
    • Canutescu, A.A.1    Shelenkov, A.A.2    Dunbrack Jr., R.L.3
  • 6
    • 33751310799 scopus 로고    scopus 로고
    • Site-specific amino acid frequency, fitness and the mutational landscape model of adaptation in human immunodeficiency virus type 1
    • da Silva J. Site-specific amino acid frequency, fitness and the mutational landscape model of adaptation in human immunodeficiency virus type 1. Genetics 174 3 (2006) 1689-1694
    • (2006) Genetics , vol.174 , Issue.3 , pp. 1689-1694
    • da Silva, J.1
  • 7
    • 7644239787 scopus 로고    scopus 로고
    • Evolutionary dynamics of the glycan shield of the human immunodeficiency virus envelope during natural infection and implications for exposure of the 2G12 epitope
    • Dacheux L., Moreau A., Ataman-Onal Y., Biron F., Verrier B., and Barin F. Evolutionary dynamics of the glycan shield of the human immunodeficiency virus envelope during natural infection and implications for exposure of the 2G12 epitope. J. Virol. 78 22 (2004) 12625-12637
    • (2004) J. Virol. , vol.78 , Issue.22 , pp. 12625-12637
    • Dacheux, L.1    Moreau, A.2    Ataman-Onal, Y.3    Biron, F.4    Verrier, B.5    Barin, F.6
  • 8
    • 0026702003 scopus 로고
    • Minimal requirements for the human immunodeficiency virus type 1 V3 domain to support the syncytium-inducing phenotype: analysis by single amino acid substitution
    • De Jong J.J., De Ronde A., Keulen W., Tersmette M., and Goudsmit J. Minimal requirements for the human immunodeficiency virus type 1 V3 domain to support the syncytium-inducing phenotype: analysis by single amino acid substitution. J. Virol. 66 11 (1992) 6777-6780
    • (1992) J. Virol. , vol.66 , Issue.11 , pp. 6777-6780
    • De Jong, J.J.1    De Ronde, A.2    Keulen, W.3    Tersmette, M.4    Goudsmit, J.5
  • 11
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck J.P., and Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17 8 (2001) 754-755
    • (2001) Bioinformatics , vol.17 , Issue.8 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 12
    • 0032883082 scopus 로고    scopus 로고
    • Analysis of the critical domain in the V3 loop of human immunodeficiency virus type 1 gp120 involved in CCR5 utilization
    • Hung C.S., Vander Heyden N., and Ratner L. Analysis of the critical domain in the V3 loop of human immunodeficiency virus type 1 gp120 involved in CCR5 utilization. J. Virol. 73 10 (1999) 8216-8226
    • (1999) J. Virol. , vol.73 , Issue.10 , pp. 8216-8226
    • Hung, C.S.1    Vander Heyden, N.2    Ratner, L.3
  • 13
    • 10744231634 scopus 로고    scopus 로고
    • Improved coreceptor usage prediction and genotypic monitoring of R5-to-X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequences
    • Jensen M.A., Li F.S., van 't Wout A.B., Nickle D.C., Shriner D., He H.X., McLaughlin S., Shankarappa R., Margolick J.B., and Mullins J.I. Improved coreceptor usage prediction and genotypic monitoring of R5-to-X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequences. J. Virol. 77 24 (2003) 13376-13388
    • (2003) J. Virol. , vol.77 , Issue.24 , pp. 13376-13388
    • Jensen, M.A.1    Li, F.S.2    van 't Wout, A.B.3    Nickle, D.C.4    Shriner, D.5    He, H.X.6    McLaughlin, S.7    Shankarappa, R.8    Margolick, J.B.9    Mullins, J.I.10
  • 14
    • 0242389260 scopus 로고    scopus 로고
    • HIV-1 subtyping
    • a. G. R. L. Rodrigo A.G (Ed), Kluwer Academic Publisher, Norwell, Massachusetts, USA
    • Kuiken C.L., and Leitner T. HIV-1 subtyping. In: a. G. R. L. Rodrigo A.G (Ed). Computational and evolutionary analysis of HIV molecular sequences Volume 1 (1999), Kluwer Academic Publisher, Norwell, Massachusetts, USA 27-53
    • (1999) Computational and evolutionary analysis of HIV molecular sequences , vol.1 , pp. 27-53
    • Kuiken, C.L.1    Leitner, T.2
  • 15
    • 0032543307 scopus 로고    scopus 로고
    • Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody
    • Kwong P.D., Wyatt R., Robinson J., Sweet R.W., Sodroski J., and Hendrickson W.A. Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody. Nature 393 6686 (1998) 648-659
    • (1998) Nature , vol.393 , Issue.6686 , pp. 648-659
    • Kwong, P.D.1    Wyatt, R.2    Robinson, J.3    Sweet, R.W.4    Sodroski, J.5    Hendrickson, W.A.6
  • 16
    • 35448977610 scopus 로고    scopus 로고
    • Selective pressures of human immunodeficiency virus type 1 (HIV-1) during pediatric infection
    • Leal E., Janini M., and Diaz R.S. Selective pressures of human immunodeficiency virus type 1 (HIV-1) during pediatric infection. Infect. Genet. Evol. 7 6 (2007) 694-707
    • (2007) Infect. Genet. Evol. , vol.7 , Issue.6 , pp. 694-707
    • Leal, E.1    Janini, M.2    Diaz, R.S.3
  • 18
    • 18744368767 scopus 로고    scopus 로고
    • Cryptic nature of a conserved, CD4-inducible V3 loop neutralization epitope in the native envelope glycoprotein oligomer of CCR5-restricted, but not CXCR4-using, primary human immunodeficiency virus type 1 strains
    • Lusso P., Earl P.L., Sironi F., Santoro F., Ripamonti C., Scarlatti G., Longhi R., Berger E.A., and Burastero S.E. Cryptic nature of a conserved, CD4-inducible V3 loop neutralization epitope in the native envelope glycoprotein oligomer of CCR5-restricted, but not CXCR4-using, primary human immunodeficiency virus type 1 strains. J. Virol. 79 11 (2005) 6957-6968
    • (2005) J. Virol. , vol.79 , Issue.11 , pp. 6957-6968
    • Lusso, P.1    Earl, P.L.2    Sironi, F.3    Santoro, F.4    Ripamonti, C.5    Scarlatti, G.6    Longhi, R.7    Berger, E.A.8    Burastero, S.E.9
  • 21
    • 0034974149 scopus 로고    scopus 로고
    • N-linked glycosylation sites adjacent to and within the V1/V2 and the V3 loops of dualtropic human immunodeficiency virus type 1 isolate DH12 gp120 affect coreceptor usage and cellular tropism
    • Ogert R.A., Lee M.K., Ross W., Buckler-White A., Martin M.A., and Cho M.W. N-linked glycosylation sites adjacent to and within the V1/V2 and the V3 loops of dualtropic human immunodeficiency virus type 1 isolate DH12 gp120 affect coreceptor usage and cellular tropism. J. Virol. 75 13 (2001) 5998-6006
    • (2001) J. Virol. , vol.75 , Issue.13 , pp. 5998-6006
    • Ogert, R.A.1    Lee, M.K.2    Ross, W.3    Buckler-White, A.4    Martin, M.A.5    Cho, M.W.6
  • 22
    • 0027204026 scopus 로고
    • Genetic heterogeneity of the V3 region of the HIV-1 envelope glycoprotein in Brazil. Brazilian Collaborative AIDS Research Group
    • Potts K.E., Kalish M.L., Lott T., Orloff G., Luo C.C., Bernard M.A., Alves C.B., Badaro R., Suleiman J., and Ferreira O. Genetic heterogeneity of the V3 region of the HIV-1 envelope glycoprotein in Brazil. Brazilian Collaborative AIDS Research Group. Aids 7 9 (1993) 1191-1197
    • (1993) Aids , vol.7 , Issue.9 , pp. 1191-1197
    • Potts, K.E.1    Kalish, M.L.2    Lott, T.3    Orloff, G.4    Luo, C.C.5    Bernard, M.A.6    Alves, C.B.7    Badaro, R.8    Suleiman, J.9    Ferreira, O.10
  • 24
    • 33748996485 scopus 로고    scopus 로고
    • Molecular switch for alternative conformations of the HIV-1 V3 region: implications for phenotype conversion
    • Rosen O., Sharon M., Quadt-Akabayov S.R., and Anglister J. Molecular switch for alternative conformations of the HIV-1 V3 region: implications for phenotype conversion. Proc. Natl. Acad. Sci. U. S. A. 103 38 (2006) 13950-13955
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , Issue.38 , pp. 13950-13955
    • Rosen, O.1    Sharon, M.2    Quadt-Akabayov, S.R.3    Anglister, J.4
  • 25
    • 0036828069 scopus 로고    scopus 로고
    • Immune-mediated positive selection drives human immunodeficiency virus type 1 molecular variation and predicts disease duration
    • Ross H.A., and Rodrigo A.G. Immune-mediated positive selection drives human immunodeficiency virus type 1 molecular variation and predicts disease duration. J. Virol. 76 22 (2002) 11715-11720
    • (2002) J. Virol. , vol.76 , Issue.22 , pp. 11715-11720
    • Ross, H.A.1    Rodrigo, A.G.2
  • 26
    • 34147104516 scopus 로고    scopus 로고
    • AIDS virus envelope spike structure
    • Roux K.H., and Taylor K.A. AIDS virus envelope spike structure. Curr. Opin. Struct. Biol. 17 2 (2007) 244-252
    • (2007) Curr. Opin. Struct. Biol. , vol.17 , Issue.2 , pp. 244-252
    • Roux, K.H.1    Taylor, K.A.2
  • 30
    • 0026600926 scopus 로고
    • Biological phenotype of human immunodeficiency virus type 1 clones at different stages of infection: progression of disease is associated with a shift from monocytotropic to T-cell-tropic virus population
    • Schuitemaker H., Koot M., Kootstra N.A., Dercksen M.W., de Goede R.E., van Steenwijk R.P., Lange J.M., Schattenkerk J.K., Miedema F., and Tersmette M. Biological phenotype of human immunodeficiency virus type 1 clones at different stages of infection: progression of disease is associated with a shift from monocytotropic to T-cell-tropic virus population. J. Virol. 66 3 (1992) 1354-1360
    • (1992) J. Virol. , vol.66 , Issue.3 , pp. 1354-1360
    • Schuitemaker, H.1    Koot, M.2    Kootstra, N.A.3    Dercksen, M.W.4    de Goede, R.E.5    van Steenwijk, R.P.6    Lange, J.M.7    Schattenkerk, J.K.8    Miedema, F.9    Tersmette, M.10
  • 32
    • 0026089184 scopus 로고
    • Macrophage and T cell-line tropisms of HIV-1 are determined by specific regions of the envelope gp120 gene
    • Shioda T., Levy J.A., and Cheng-Mayer C. Macrophage and T cell-line tropisms of HIV-1 are determined by specific regions of the envelope gp120 gene. Nature 349 6305 (1991) 167-169
    • (1991) Nature , vol.349 , Issue.6305 , pp. 167-169
    • Shioda, T.1    Levy, J.A.2    Cheng-Mayer, C.3
  • 33
    • 33749022485 scopus 로고    scopus 로고
    • Reactivation of ancestral strains of HIV-1 in the gp120 V3 env region in patients failing antiretroviral therapy and subjected to structured treatment interruption
    • Silva W.P., Santos D.E., Leal E., Brunstein A., Sucupira M.C., Sabino E.C., and Diaz R.S. Reactivation of ancestral strains of HIV-1 in the gp120 V3 env region in patients failing antiretroviral therapy and subjected to structured treatment interruption. Virology 354 1 (2006) 35-47
    • (2006) Virology , vol.354 , Issue.1 , pp. 35-47
    • Silva, W.P.1    Santos, D.E.2    Leal, E.3    Brunstein, A.4    Sucupira, M.C.5    Sabino, E.C.6    Diaz, R.S.7
  • 34
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 24 (1997) 4876-4882
    • (1997) Nucleic Acids Res. , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 35
    • 33645287295 scopus 로고    scopus 로고
    • Fold recognition of the human immunodeficiency virus type 1 V3 loop and flexibility of its crown structure during the course of adaptation to a host
    • Watabe T., Kishino H., Okuhara Y., and Kitazoe Y. Fold recognition of the human immunodeficiency virus type 1 V3 loop and flexibility of its crown structure during the course of adaptation to a host. Genetics 172 3 (2006) 1385-1396
    • (2006) Genetics , vol.172 , Issue.3 , pp. 1385-1396
    • Watabe, T.1    Kishino, H.2    Okuhara, Y.3    Kitazoe, Y.4
  • 37
    • 0041571679 scopus 로고    scopus 로고
    • Adaptation in the env gene of HIV-1 and evolutionary theories of disease progression
    • Williamson S. Adaptation in the env gene of HIV-1 and evolutionary theories of disease progression. Mol. Biol. Evol. 20 8 (2003) 1318-1325
    • (2003) Mol. Biol. Evol. , vol.20 , Issue.8 , pp. 1318-1325
    • Williamson, S.1
  • 39
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang Z., Nielsen R., Goldman N., and Pedersen A.M. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155 1 (2000) 431-449
    • (2000) Genetics , vol.155 , Issue.1 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.M.4
  • 40
    • 0041884768 scopus 로고    scopus 로고
    • Widespread adaptive evolution in the human immunodeficiency virus type 1 genome
    • Yang W., Bielawski J.P., and Yang Z. Widespread adaptive evolution in the human immunodeficiency virus type 1 genome. J. Mol. Evol. 57 2 (2003) 212-221
    • (2003) J. Mol. Evol. , vol.57 , Issue.2 , pp. 212-221
    • Yang, W.1    Bielawski, J.P.2    Yang, Z.3
  • 41
    • 9744280420 scopus 로고    scopus 로고
    • Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and influenza hemagglutinin
    • Zhang M., Gaschen B., Blay W., Foley B., Haigwood N., Kuiken C., and Korber B. Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and influenza hemagglutinin. Glycobiology 14 12 (2004) 1229-1246
    • (2004) Glycobiology , vol.14 , Issue.12 , pp. 1229-1246
    • Zhang, M.1    Gaschen, B.2    Blay, W.3    Foley, B.4    Haigwood, N.5    Kuiken, C.6    Korber, B.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.