Comparison of domestic and wild channel catfish (Ictalurus punctatus) populations provides no evidence for genetic impact

Aquaculture

Volumn 252, Issue 2-4, 2006, Pages 133-146

  Simmons, Micah ^a   Mickett, Kathryn ^a   Kucuktas, Huseyin ^a   Li, Ping ^a   Dunham, Rex ^a   Liu, Zhanjiang ^a  

^a AUBURN UNIVERSITY   (United States)

Author keywords

AFLP; Catfish; Diversity; Fish; Genetic resource; Marker; Polymorphism; Population

Indexed keywords

CONSERVATION GENETICS; ECOLOGICAL IMPACT; FISH CULTURE; GENETIC VARIATION; POPULATION GENETICS;

ALABAMA; NORTH AMERICA; UNITED STATES;

ICTALURUS PUNCTATUS;

EID: 32344436202     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2005.11.006     Document Type: Article

References (55)

1. F. Allendorf, N. Ryman, and F. Utter Genetics and fishery management: past, present, and future N. Ryman F. Utter Population Genetics and Fishery Management 1987 Washington Sea Grant Publications/University of Washington Press Seattle 1 19
2. Y.P. Altukhov, and E.A. Salmenkova Stock transfer relative to natural organization, management, and conservation of fish populations N. Ryman F. Utter Population Genetics and Fishery Management 1987 Washington Sea Grant Publications/University of Washington Press Seattle 333 343
3. S. Anderson, W. Sadinski, and L. Shugart Genetic and molecular ecotoxicology: a research framework Napa Conference on Genetic and Molecular Ecotoxicology, 12-15 October, 1993; Yountville, CA, USA Environmental Health Perspectives vol. 102 1994 3 8
4. J.C. Avise Molecular Markers, Natural History and Evolution 1994 Chapman and Hall New York, USA 511 pp.
5. M.J. Bagley, S.L. Anderson, and B. May Choice of methodology for assessing genetic impacts of environmental stressors: polymorphism and reproducibility of RAPD and AFLP fingerprints Ecotoxicology 10 2001 239 244
6. M.A. Banks, V.K. Rashbrook, M.J. Calavetta, C.A. Dean, and D. Hedgecock Analysis of microsatellite DNA resolves genetic structure and diversity of Chinook salmon (Oncorhynchus tshawytscha) in California's Central Valley Canadian Journal of Fisheries and Aquatic Sciences 57 2000 915 927
7. J.W. Bickham, and M.J. Smolen Somatic and heritable effects of environmental genotoxins and the emergence of evolutionary toxicology Environmental Health Perspectives 102 1994 25 28
8. R.D. Brodeur, and M.S. Busby Occurrence of an Atlantic salmon (Salmo salar) in the Bering Sea Alaska Fishery Research Bulletin 5 1998 64 66
9. D.E. Campton Natural hybridization and introgression in fishes: methods of detection and interpretation N. Ryman F.M. Utter Population Genetics and Fishery Management. Washington Sea Grant Program 1987 University of Washington Press Seattle 161 192
10. G.J. Carmichael, M.E. Schmidt, and D.C. Morizot Electrophoretic identification of genetic markers in channel catfish and blue catfish by use of low-risk tissues Transactions of the American Fisheries Society 121 1992 26 35
11. L.K. Chong, S.G. Tan, K. Yusoff, and S.S. Siraj Identification and characterization of Malaysian river catfish, Mystus nemurus (C&V): RAPD and AFLP analysis Biochemical Genetics 38 2000 63 76
12. L. Congiu, I. Dupanloup, T. Patarnello, F. Fontana, R. Rossi, G. Arlati, and L. Zane Identification of interspecific hybrids by amplified fragment length polymorphism: the case of sturgeon Molecular Ecology 10 2001 2355 2359
13. L. David, P. Rajasekaran, J. Fang, J. Hillel, and U. Lavi Polymorphism in ornamental and common carp strains (Cyprinus carpio L.) as revealed by AFLP analysis and a new set of microsatellite markers Molecular Genetics and Genomics 266 2001 353 362
14. D.A. Dehart Affidavit to State of Oregon, Case Number 99-6265-HO 1999 Oregon Department of Justice Salem, OR
15. R.A. Dunham, and R.O. Smitherman Ancestry and Breeding of Catfish in the United States, Cir. 273 1984 Alabama Agricultural Experiment Station Auburn, AL
16. C.C. Englbrecht, J. Freyhof, A. Nolte, K. Rassmann, U. Schliewen, and D. Tautz Phylogeography of the bullhead Cottus gobio (Pisces: Teleostei: Cottidae) suggests a pre-Pleistocene origin of the major central European populations Molecular Ecology 9 2000 709 722
17. A. Felip, G. Martinez-Rodriguez, F. Piferrer, M. Carrillo, and S. Zanuy AFLP analysis confirms exclusive maternal genomic contribution of meiogynogenetic sea bass (Dicentrarchus labrax L.) Marine Biotechnology 2 2000 301 306
18. I.A. Fleming, K. Hindar, I.B. Mjolnerod, B. Jonsson, T. Balstad, and A. Lamberg Lifetime success and interactions of farm salmon invading a native population Proceedings of the Royal Society of London. B 267 2000 1517 1523
19. G.A. Fox Tinkering with the tinkerer: pollution versus evolution Environmental Health Perspectives 103 1995 93 100
20. G.C. Gorman, and J. Renzi Genetic distance and heterozygosity estimates in electrophoretic studies: effects of sample size Copeia 2 1979 242 249
21. E.M. Hallerman, R.A. Dunham, and R.O. Smitherman Selection or drift: isozyme allele frequency changes among channel catfish selected for rapid growth Transactions of the American Fisheries Society 115 1986 60 68
22. J.L. Hamrick, M.J.W. Godt, D.A. Murawski, and M.D. Loveless Correlations between species traits and allozyme diversity: implications for conservation biology D.A. Falk K.E. Holsinger Genetics and Conservation of Rare Plants 1991 Oxford University Press Oxford 75 86
23. K. Han, and B. Ely Use of AFLP analyses to assess genetic variation in Morone and Thunnus species Marine Biotechnology 4 2002 141 145
24. D. Heath, J. Heath, C. Bryden, J. Rachel, and F. Charles Rapid evolution of egg size in captive salmon Science 299 2003 1738 1740
25. K. Hindar Interactions of cultured and wild species M.F. Tlusty Marine Aquaculture and the Environment 2001 Cape Cod Press Falmouth, MA 50
26. K. Hindar, N. Ryman, and F. Utter Genetic effects of cultured fish on natural fish populations Canadian Journal of Fisheries and Aquatic Sciences 48 1991 945 957
27. Y. Kai, K. Nakayama, and T. Nakabo Genetic differences among three colour morphotypes of the black rockfish, Sebastes inermis, inferred from mtDNA and AFLP analyses Molecular Ecology 11 2002 2591 2598
28. Z. Liu A review of catfish genomics: progress and perspectives Comparative and Functional Genomics 4 2003 259 265
29. Z.J. Liu, and J. Cordes DNA marker technologies and their applications in aquaculture genetics Aquaculture 238 2004 1 37
30. 2 and backcross hybrids Animal Genetics 29 1998 58 62
31. 2 and backcross hybrids Molecular and General Genetics 258 1998 260 268
32. Z. Liu, P. Li, B.J. Argue, and R.A. Dunham Random amplified polymorphic DNA markers: usefulness for gene mapping and analysis of genetic variation of catfish Aquaculture 174 1999 59 68
33. Z. Liu, P. Li, H. Kucuktas, A. Nichols, G. Tan, X. Zheng, B.J. Argue, R. Yant, and R.A. Dunham Development of amplified fragment length polymorphism (AFLP) markers suitable for genetic linkage mapping of catfish Transactions of the American Fisheries Society 128 1999 317 327
34. Z. Liu, G. Tan, P. Li, and R.A. Dunham Transcribed dinucleotide microsatellites and their associated genes from channel catfish Ictalurus punctatus Biochemical and Biophysical Research Communications 259 1999 190 194
35. Z.J. Liu, A. Karsi, P. Li, D. Cao, and R. Dunham An AFLP-based genetic linkage map of channel catfish (Ictalurus punctatus) constructed by using an interspecific hybrid resource family Genetics 165 2003 687 694
36. G.F. McCracken, C.R. Parker, and S.Z. Guffey Genetic differentiation and hybridization between stocked hatchery and native brook trout in Great Smoky Mountains National Park Transactions of the American Fisheries Society 122 1993 533 542
37. K. Mickett, C. Morton, J. Feng, P. Li, M. Simmons, R.A. Dunham, D. Cao, and Z.J. Liu Assessing genetic diversity of domestic populations of channel catfish (Ictalurus punctatus) in Alabama using AFLP markers Aquaculture 228 2003 91 105
38. M.P. Miller Tools for Population Genetic Analysis (TFPGA), Version 1.3. A Windows Program for the Analysis of Allozyme and Molecular Population Genetic Data 1997 Department of Biological Sciences, Northern Arizona University Flagstaff, AZ
39. J.I. Montoya-Burgos Historical biogeography of the catfish genus Hypostomus (Siluriformes: Loricariidae), with implications on the diversification of Neotropical ichthyofauna Molecular Ecology 12 2003 1855 1867
40. M. Nei Estimation of average heterozygosity and genetic distance from a small number of individuals Genetics 89 1978 583 590
41. M. Nei Molecular Evolutionary Genetics 1987 Columbia University Press New York
42. S.R. Palumbi Humans as the world's greatest evolutionary force Science 293 2001 1786 1790
43. S.M. Rogers, D. Campbell, S.J. Baird, R.G. Danzmann, and L. Bernatchez Combining the analyses of introgressive hybridisation and linkage mapping to investigate the genetic architecture of population divergence in the lake whitefish (Coregonus clupeaformis, Mitchill) Genetics 111 2001 25 41
44. Rohlf, F.J., 1998. NTSYS, pc. Version 2.10p. Applied Biostatistics, Setauket, NY, http://www.exetersoftware.com/cat/ntsyspc/ntsyspc.html.
45. J. Serapion, H. Kucuktas, J. Feng, and Z.J. Liu Bioinformatic mining of type I microsatellites from expressed sequence tags of channel catfish (Ictalurus punctatus) Marine Biotechnology 6 2004 364 377
46. R.O. Smitherman, and R.A. Dunham Relationships among cultured and naturally occurring populations of freshwater catfish in the United States R.C. Marcia P.M. James Interactions Between Cultured Species And Naturally Occurring Species In The Environment: Proceedings of the Twenty-second U.S.-Japan Aquaculture Panel Symposium, 21-22, August 1993, Homer, Alaska UJNR Technical Report vol. 22 1993
47. D.L. Swofford PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods) Version 4 2001 Sinauer Associates Sunderland, MA
48. T.R. Tiersch, A.G. Sheryl, and G.J. Carmichael Cryopreservation of channel catfish sperm: storage in cryoprotectants, fertilization trials, and growth of channel catfish produced with cryopreserved sperm Transactions of the American Fisheries Society 123 1994 580 586
49. USDA, and National Agricultural Statistics Service (NASS) Catfish Production 2001 U.S. Department of Agriculture Washington, DC
50. F. Utter Genetic impacts of fish introductions E. Hallerman Population Genetics, Principles and Applications for Fisheries Scientists 2003 American Fisheries Society Bethesda, MD 357 378
51. B.S. Weir, and C.C. Cockerham Estimating F-statistics for the analysis of population structure Evolution 38 1984 1358 1370
52. A. Whitehead, S.L. Anderson, K.M. Kuivila, J.L. Roach, and B. May Genetic variation among interconnected populations of Catostomus occidentalis: implications for distinguishing impacts of contaminants from biogeographical structuring Molecular Ecology 12 2003 2817 2833
53. W.P. Young, C.O. Ostberg, P. Keim, and G.H. Thorgaard Genetic characterization of hybridization and introgression between anadromous rainbow trout (Oncorhynchus mykiss irideus) and coastal cutthroat trout (O. clarki clarki) Molecular Ecology 10 2001 921 930
54. G. Yue, Y. Li, F. Chen, S. Cho, L.C. Lim, and L. Orban Comparison of three DNA marker systems for assessing genetic diversity in Asian arowana (Scleropages formosus) Electrophoresis 23 2002 1025 1032
55. R. Zardoya, and I. Doadrio Molecular evidence on the evolutionary and biogeographical patterns of European cyprinids Journal of Molecular Evolution 49 1999 227 237