Archaic African and Asian lineages in the genetic ancestry of modern humans

American Journal of Human Genetics

Volumn 60, Issue 4, 1997, Pages 772-789

  Harding, Rosalind M ^a   Fullerton, S M ^a,c   Griffiths, R C ^b   Bond, Jacquelyn ^a,d   Cox, Martin J ^a,e   Schneider, Julie A ^a   Moulin, Danielle S ^a   Clegg, J B ^a  

^a JOHN RADCLIFFE HOSPITAL   (United Kingdom)

^b MONASH UNIVERSITY   (Australia)

^c DURHAM UNIVERSITY   (United Kingdom)

^d BRUNEL UNIVERSITY   (United Kingdom)

^e UNIVERSITY OF WARWICK   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AFRICA; ALLELE; ARTICLE; ASIA; DATA ANALYSIS; DNA POLYMORPHISM; EUROPE; GENETIC ANALYSIS; HAPLOTYPE; MIGRATION; PHYLOGENY; POPULATION GENETICS; PRIORITY JOURNAL; RACE DIFFERENCE;

AFRICA; ANIMALS; ASIA; COMPUTER SIMULATION; EMIGRATION AND IMMIGRATION; EUROPE; EVOLUTION; GLOBINS; HAPLOTYPES; HOMINIDAE; HUMANS; LIKELIHOOD FUNCTIONS; LINKAGE (GENETICS); MODELS, GENETIC; POLYMORPHISM, GENETIC; TIME FACTORS;

HOMINIDAE;

EID: 0030949513     PISSN: 00029297     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (60)

1. Allison AC (1954) Protection afforded by sickle cell trait against subtertian malarial infection. Br Med J 1:290-294
2. Antonarakis SE, Boehm CD, Giardina PJV, Kazazian HH Jr (1982) Nonrandom association of polymorphic restriction sites in the β-globin gene cluster. Proc Natl Acad Sci USA 79:137-141
3. Armour JAL, Anttinen T, May CA, Vega EE, Sajantila A, Kidd JR, Kidd KK, et al (1996) Minisatellite diversity supports a recent African origin for modern humans. Nat Genet 13: 154-160
4. Bowcock AM, Ruiz-Linares A, Tomfohrde J, Minch E, Kidd JR, Cavalli-Sforza LL (1994) High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368:455-457
5. Brookfield JFY (1994) A new molecular view of human origins. Curr Biol 4:651-652
6. Chen Y-S, Torroni A, Excoffier L, Santachiara-Benerecetti AS, Wallace DC (1995) Analysis of mtDNA variation in African populations reveals the most ancient of all human continent-specific haplogroups. Am J Hum Genet 57:133-149
7. Donnelly P (1996) Interpreting genetic variability: the effects of shared evolutionary history. In: Chadwick D, Cardew G (eds) Variation in the human genome. John Wiley & Sons, Chichester, pp 25-40
8. Donnelly P, Tavaré S (1995) Coalescents and genealogical structure under neutrality. Annu Rev Genet 29:401-421
9. Dorit, RL, Akashi H, Gilbert W (1995) Absence of polymorphism at the ZFY locus on the human Y chromosome. Science 268:1183-1185
10. Ewens, WJ (1972) The sampling theory of selectively neutral alleles. Theor Popul Biol 3:87-112
11. Flint J, Harding RM, Clegg JB, Boyce AJ (1993) Why are some genetic disease common? Distinguishing selection from other processes by molecular analysis of globin gene variants. Hum Genet 91:91-117
12. Fullerton SM, Harding RM, Boyce AJ, Clegg JB (1994) Molecular and population genetic analysis of allelic sequence diversity at the human β-globin locus. Proc Natl Acad Sci USA 91:1805-1809
13. Griffiths RC (1987) An algorithm for constructing genealogical trees. Statistics Research Report 163, Department of Mathematics, Monash University
14. Griffiths RC, Tavaré S (1994a) Ancestral inference in population genetics. Stat Sci 9:307-319
15. _ (1994b) Sampling theory for neutral alleles in a varying environment. Philos Trans R Soc Lond B 344:403-410
16. Gusfield D (1991) Efficient algorithms for inferring evolutionary trees. Networks 21:19-28
17. Haldane JBS (1948) The rate of mutation of human genes. Proceedings of the 8th International Congress of Genetics. Hereditas Suppl 35:267-273
18. Hammer MF (1995) A recent common ancestry for human Y chromosomes. Nature 378:376-378
19. Harding RM (1996) Using the coalescent to interpret gene trees. In: Boyce AJ, Mascie-Taylor CGN (eds) Molecular biology and human diversity, Cambridge University Press, Cambridge, pp 63-80
20. Harding RM, Fullerton SM, Griffiths RC, Clegg JB. A gene tree for β-globin sequences from Melanesia. J Mol Evol (in press)
21. Harpending HC, Sherry ST, Rogers AR, Stoneking M (1993) The genetic structure of ancient human populations. Curr Anthropol 34:483-496
22. Hill AVS, Allsopp CEM, Kwiatkowski D, Taylor TE, Yates SNR, Anstey NM, Wirima JJ, et al (1992) Extensive genetic diversity in the HLA class II region of Africans, with a focally predominant allele, DRB1*1304. Proc Natl Acad Sci USA 89:2277-2281
23. Hudson RR (1983) Properties of a neutral allele model with intragenic recombination. Theor Popul Biol 23:183-201
24. Hudson RR, Boos DD, Kaplan NL (1992) A statistical test for detecting geographic subdivision. Mol Biol Evol 9:138-151
25. Jorde LB, Bamshad MJ, Watkins WS, Zenger R, Fraley AE, Krakowiak PA, Carpenter KD, et al (1995) Origins and affinities of modern humans: a comparison of mitochondrial and nuclear genetic data. Am J Hum Genet 57:523-539
26. Kimura M (1983) The neutral theory of molecular evolution. Cambridge University Press, Cambridge
27. Kingman JFC (1982a) The coalescent. Stochastic Processes Appl 13:235-248
28. _ (1982b) Exchangeability and the evolution of large populations. In: Koch G, Spizzichino F (eds) Exchangeability in probability and statistics. North-Holland, Amsterdam, pp 97-112
29. _ (1982c) On the genealogy of large populations. J Appl Prob 19A:27-43
30. Kolman CJ, Sambuughin N, Bermingham E (1996) Mitochondrial DNA analysis of Mongolian populations and implications for the origin of New World founders. Genetics 142: 1321-1334
31. Kreitman M (1983) Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster. Nature 304:412-417
32. Li W-H, Sadler LA (1991) Low nucleotide diversity in man. Genetics 129:513-523
33. Martinson JJ, Excoffier L, Swinburn C, Boyce AJ, Harding RM, Langaney A, Clegg JB (1995) High diversity of α-globin haplotypes in a Senegalese population, including many previously unreported variants. Am J Hum Genet 57: 1186-1198
34. Mountain JL, Cavalli-Sforza LL (1994) Inferences of human evolution through cladistic analysis of nuclear DNA restriction polymorphisms. Proc Natl Acad Sci USA 91:6515-6519
35. Nei M, Li W-H (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76:5269-5273
36. Nei M, Takezaki N (1996) The root of the phylogenetic tree of human populations. Mol Biol Evol 13:170-177
37. Newman JL (1995) The peopling of Africa: a geographic interpretation. Yale University Press, New Haven
38. Newton CR, Graham A, Heptinstall LE, Powell SJ, Summers C, Kalsheker N, Smith JC, et al (1989) Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS). Nucleic Acids Res 17:2503-2516
39. Orkin SH, Kazazian HH Jr (1984) The mutation and polymorphism of the human β-globin gene and its surrounding DNA. Annu Rev Genet 18:131-171
40. Orkin SH, Kazazian HH Jr, Antonarakis SE, Goff SC, Boehm CD, Sexton JP, Waber PG, et al (1982) Linkage of β-thalassaemia mutations and β-globin gene polymorphisms with DNA polymorphisms in the human β-globin gene cluster. Nature 296:627-631
41. Pope GG (1992) Cranioacial evidence for the origin of modern humans in China. Yearbook Phys Anthropol 35:243-298
42. Rohlf FJ (1993) NTSYS-pc: numerical taxonomy and multivariate analysis system. Exeter Software, Setauket, NY
43. Ruvolo M, Zehr S, von Dornum M, Pan D, Chang B, Lin J (1993) Mitochondrial COII sequences and modern human origins. Mol Biol Evol 10:1115-1135
44. Sherry ST, Rogers AR, Harpending H, Soodyall H, Jenkins T, Stoneking M (1994) Mismatch distributions of mtDNA reveal recent human population expansions. Hum Biol 66: 761-775
45. Stringer C, Andrews P (1988) Genetic and fossil evidence for the origin of modern humans. Science 239:1263-1268
46. Strobeck C, Morgan K (1978) The effect of intragenic recombination on the number of alleles in a finite population. Genetics 88:829-844
47. Tajima F (1983) Evolutionary relationship of DNA sequences in finite populations. Genetics 105:437-460
48. _ (1989a) The effect of change in population size on DNA polymorphism. Genetics 123:597-601
49. _ (1989b) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595
50. Takahata N (1995) A genetic perspective on the origin and history of humans. Annu Rev Ecol Syst 26:343-372
51. Takahata N, Satta Y, Klein J (1995) Divergence time and population size in the lineage leading to modern humans. Theor Popul Biol 48:198-221
52. Templeton AR (1993) The "Eve" hypothesis: a genetic critique and reanalysis. Am Anthropol 95:51-72
53. _ (1996) Gene lineages and human evolution. Science 272:1363
54. Tishkoff SA, Dietzsch E, Speed W, Pakstis AJ, Kidd JR, Cheung K, Bonné-Tamir B, et al (1996) Global patterns of linkage disequilibrium at the CD4 locus and modern human origins. Science 271:1380-1387
55. C genes. Hum Biol 63:241-252
56. Vigilant L, Stoneking M, Harpending H, Hawkes K, Wilson AC (1991) African populations and the evolution of human mitochondrial DNA. Science 253:1503-1507
57. Wainscoat JS, Hill AVS, Boyce AJ, Flint J, Hernandez M, Thein SL, Old JM, et al (1986) Evolutionary relationships of human populations from an analysis of nuclear DNA polymorphisms. Nature 319:491-493
58. Ward RH, Frazier BL, Dew-Jager K, Pääbo S (1991) Extensive mitochondrial diversity within a single Amerindian tribe. Proc Natl Acad Sci USA 88:8720-8724
59. Weatherall DJ, Clegg JB (1981) The thalassaemia syndromes. Blackwell Scientific, Oxford
60. Wolfe KH, Sharp PM, Li W-H (1989) Mutation rates differ among regions of the mammalian genome. Nature 337:283-285