-
1
-
-
40149099212
-
-
Barberan-Soler S, Zahler AM. 2008. Alternative splicing regulation during C. elegans development: splicing factors as regulated targets. PLoS Genet. 4:e1000001.
-
Barberan-Soler S, Zahler AM. 2008. Alternative splicing regulation during C. elegans development: splicing factors as regulated targets. PLoS Genet. 4:e1000001.
-
-
-
-
2
-
-
38549152361
-
Natural variation and population genetics of Caenorhabditis elegans
-
Barriere A, Felix MA. 2005. Natural variation and population genetics of Caenorhabditis elegans. WormBook. 1-19.
-
(2005)
WormBook
, pp. 1-19
-
-
Barriere, A.1
Felix, M.A.2
-
3
-
-
33745899048
-
Alternative splicing: New insights from global analyses
-
Blencowe BJ. 2006. Alternative splicing: new insights from global analyses. Cell. 126:37-47.
-
(2006)
Cell
, vol.126
, pp. 37-47
-
-
Blencowe, B.J.1
-
4
-
-
0032940802
-
smg-7 is required for mRNA surveillance in Caenorhabditis elegans
-
Cali BM, Kuchma SL, Latham J, Anderson P. 1999. smg-7 is required for mRNA surveillance in Caenorhabditis elegans. Genetics. 151:605-616.
-
(1999)
Genetics
, vol.151
, pp. 605-616
-
-
Cali, B.M.1
Kuchma, S.L.2
Latham, J.3
Anderson, P.4
-
5
-
-
0028345019
-
Imprecise excision of the Caenorhabditis elegans transposon Tc1 creates functional 5′ splice sites
-
Carr B, Anderson P. 1994. Imprecise excision of the Caenorhabditis elegans transposon Tc1 creates functional 5′ splice sites. Mol Cell Biol. 14:3426-3433.
-
(1994)
Mol Cell Biol
, vol.14
, pp. 3426-3433
-
-
Carr, B.1
Anderson, P.2
-
6
-
-
3943059570
-
High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome
-
Denver DR, Morris K, Lynch M, Thomas WK. 2004. High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome. Nature. 430:679-682.
-
(2004)
Nature
, vol.430
, pp. 679-682
-
-
Denver, D.R.1
Morris, K.2
Lynch, M.3
Thomas, W.K.4
-
7
-
-
18144405733
-
The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans
-
Denver DR, Morris K, Streelman JT, Kim SK, Lynch M, Thomas WK. 2005. The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans. Nat Genet. 37:544-548.
-
(2005)
Nat Genet
, vol.37
, pp. 544-548
-
-
Denver, D.R.1
Morris, K.2
Streelman, J.T.3
Kim, S.K.4
Lynch, M.5
Thomas, W.K.6
-
8
-
-
0037360525
-
Phylogenetics in Caenorhabditis elegans: An analysis of divergence and outcrossing
-
Denver DR, Morris K, Thomas WK. 2003. Phylogenetics in Caenorhabditis elegans: an analysis of divergence and outcrossing. Mol Biol Evol. 20:393-400.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 393-400
-
-
Denver, D.R.1
Morris, K.2
Thomas, W.K.3
-
9
-
-
0037336331
-
Open source software for the analysis of microarray data
-
March Suppl
-
Dudoit S, Gentleman RC, Quackenbush J. 2003. Open source software for the analysis of microarray data. Biotechniques. March (Suppl):45-51.
-
(2003)
Biotechniques
, pp. 45-51
-
-
Dudoit, S.1
Gentleman, R.C.2
Quackenbush, J.3
-
10
-
-
35248901812
-
Gene expression, intron density, and splice site strength in Drosophila and Caenorhabditis
-
Fahey ME, Higgins DG. 2007. Gene expression, intron density, and splice site strength in Drosophila and Caenorhabditis. J Mol Evol. 65:349-357.
-
(2007)
J Mol Evol
, vol.65
, pp. 349-357
-
-
Fahey, M.E.1
Higgins, D.G.2
-
11
-
-
0030945064
-
Natural variation and copulatory plug formation in Caenorhabditis elegans
-
Hodgkin J, Doniach T. 1997. Natural variation and copulatory plug formation in Caenorhabditis elegans. Genetics. 146:149-164.
-
(1997)
Genetics
, vol.146
, pp. 149-164
-
-
Hodgkin, J.1
Doniach, T.2
-
12
-
-
38949095296
-
Widespread evolutionary conservation of alternatively spliced exons in Caenorhabditis
-
Irimia M, Rukov JL, Penny D, Garcia-Fernandez J, Vinther J, Roy SW. 2008. Widespread evolutionary conservation of alternatively spliced exons in Caenorhabditis. Mol Biol Evol. 25:375-382.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 375-382
-
-
Irimia, M.1
Rukov, J.L.2
Penny, D.3
Garcia-Fernandez, J.4
Vinther, J.5
Roy, S.W.6
-
13
-
-
33746609827
-
Intronic alternative splicing regulators identified by comparative genomics in nematodes
-
Kabat JL, Barberan-Soler S, McKenna P, Clawson H, Farrer T, Zahler AM. 2006. Intronic alternative splicing regulators identified by comparative genomics in nematodes. PLoS Comput Biol. 2:e86.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Kabat, J.L.1
Barberan-Soler, S.2
McKenna, P.3
Clawson, H.4
Farrer, T.5
Zahler, A.M.6
-
14
-
-
0033832676
-
-
Kent WJ, Zahler AM. 2000. Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment. Genome Res. 10:1115-1125.
-
Kent WJ, Zahler AM. 2000. Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment. Genome Res. 10:1115-1125.
-
-
-
-
15
-
-
33846681383
-
Different levels of alternative splicing among eukaryotes
-
Kim E, Magen A, Ast G. 2007. Different levels of alternative splicing among eukaryotes. Nucleic Acids Res. 35:125-131.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 125-131
-
-
Kim, E.1
Magen, A.2
Ast, G.3
-
16
-
-
34247330971
-
Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements
-
Lareau LF, Inada M, Green RE, Wengrod JC, Brenner SE. 2007. Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements. Nature. 446:926-929.
-
(2007)
Nature
, vol.446
, pp. 926-929
-
-
Lareau, L.F.1
Inada, M.2
Green, R.E.3
Wengrod, J.C.4
Brenner, S.E.5
-
17
-
-
34247556560
-
Mechanistic insights and identification of two novel factors in the C. elegans NMD pathway
-
Longman D, Plasterk RH, Johnstone IL, Caceres JF. 2007. Mechanistic insights and identification of two novel factors in the C. elegans NMD pathway. Genes Dev. 21:1075-1085.
-
(2007)
Genes Dev
, vol.21
, pp. 1075-1085
-
-
Longman, D.1
Plasterk, R.H.2
Johnstone, I.L.3
Caceres, J.F.4
-
18
-
-
33645521073
-
Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes
-
Malko DB, Makeev VJ, Mironov AA, Gelfand MS. 2006. Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes. Genome Res. 16:505-509.
-
(2006)
Genome Res
, vol.16
, pp. 505-509
-
-
Malko, D.B.1
Makeev, V.J.2
Mironov, A.A.3
Gelfand, M.S.4
-
19
-
-
0035500594
-
Stop making nonSense: The C. elegans smg genes
-
Mango SE. 2001. Stop making nonSense: the C. elegans smg genes. Trends Genet. 17:646-653.
-
(2001)
Trends Genet
, vol.17
, pp. 646-653
-
-
Mango, S.E.1
-
20
-
-
0037062982
-
Alternative pre-mRNA splicing and proteome expansion in metazoans
-
Maniatis T, Tasic B. 2002. Alternative pre-mRNA splicing and proteome expansion in metazoans. Nature. 418:236-243.
-
(2002)
Nature
, vol.418
, pp. 236-243
-
-
Maniatis, T.1
Tasic, B.2
-
21
-
-
33847749371
-
Efficient high-resolution deletion discovery in Caenorhabditis elegans by array comparative genomic hybridization
-
Maydan JS, Flibotte S, Edgley ML, Lau J, Selzer RR, Richmond TA, Pofahl NJ, Thomas JH, Moerman DG. 2007. Efficient high-resolution deletion discovery in Caenorhabditis elegans by array comparative genomic hybridization. Genome Res. 17:337-347.
-
(2007)
Genome Res
, vol.17
, pp. 337-347
-
-
Maydan, J.S.1
Flibotte, S.2
Edgley, M.L.3
Lau, J.4
Selzer, R.R.5
Richmond, T.A.6
Pofahl, N.J.7
Thomas, J.H.8
Moerman, D.G.9
-
22
-
-
33846015866
-
Functions of the nonsense-mediated mRNA decay pathway in Drosophila development
-
Metzstein MM, Krasnow MA. 2006. Functions of the nonsense-mediated mRNA decay pathway in Drosophila development. PLoS Genet. 2:e180.
-
(2006)
PLoS Genet
, vol.2
-
-
Metzstein, M.M.1
Krasnow, M.A.2
-
23
-
-
0038617729
-
Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss
-
Modrek B, Lee CJ. 2003. Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss. Nat Genet. 34:177-180.
-
(2003)
Nat Genet
, vol.34
, pp. 177-180
-
-
Modrek, B.1
Lee, C.J.2
-
24
-
-
0030931561
-
smg mutants affect the expression of alternatively spliced SR protein mRNAs in Caenorhabditis elegans
-
Morrison M, Harris KS, Roth MB. 1997. smg mutants affect the expression of alternatively spliced SR protein mRNAs in Caenorhabditis elegans. Proc Natl Acad Sci USA. 94:9782-9785.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 9782-9785
-
-
Morrison, M.1
Harris, K.S.2
Roth, M.B.3
-
25
-
-
33947305594
-
Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay
-
Ni JZ, Grate L, Donohue JP, Preston C, Nobida N, O'Brien G, Shiue L, Clark TA, Blume JE, Ares M Jr. 2007. Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay. Genes Dev. 21:708-718.
-
(2007)
Genes Dev
, vol.21
, pp. 708-718
-
-
Ni, J.Z.1
Grate, L.2
Donohue, J.P.3
Preston, C.4
Nobida, N.5
O'Brien, G.6
Shiue, L.7
Clark, T.A.8
Blume, J.E.9
Ares Jr., M.10
-
26
-
-
0027382460
-
mRNA surveillance by the Caenorhabditis elegans smg genes
-
Pulak R, Anderson P. 1993. mRNA surveillance by the Caenorhabditis elegans smg genes. Genes Dev. 7:1885-1897.
-
(1993)
Genes Dev
, vol.7
, pp. 1885-1897
-
-
Pulak, R.1
Anderson, P.2
-
27
-
-
29144512262
-
RASE: Recognition of alternatively spliced exons in C. elegans
-
Ratsch G, Sonnenburg S, Scholkopf B. 2005. RASE: recognition of alternatively spliced exons in C. elegans. Bioinformatics. 21(Suppl 1):i369-i377.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
-
-
Ratsch, G.1
Sonnenburg, S.2
Scholkopf, B.3
-
28
-
-
25844435702
-
Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets
-
Rehwinkel J, Letunic I, Raes J, Bork P, Izaurralde E. 2005. Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets. RNA. 11:1530-1544.
-
(2005)
RNA
, vol.11
, pp. 1530-1544
-
-
Rehwinkel, J.1
Letunic, I.2
Raes, J.3
Bork, P.4
Izaurralde, E.5
-
29
-
-
0037795455
-
Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain
-
Roy SW, Fedorov A, Gilbert W. 2003. Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain. Proc Natl Acad Sci USA. 100:7158-7162.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 7158-7162
-
-
Roy, S.W.1
Fedorov, A.2
Gilbert, W.3
-
30
-
-
34047225575
-
High qualitative and quantitative conservation of alternative splicing in Caenorhabditis elegans and Caenorhabditis briggsae
-
Rukov JL, Irimia M, Mork S, Lund VK, Vinther J, Arctander P. 2007. High qualitative and quantitative conservation of alternative splicing in Caenorhabditis elegans and Caenorhabditis briggsae. Mol Biol Evol. 24:909-917.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 909-917
-
-
Rukov, J.L.1
Irimia, M.2
Mork, S.3
Lund, V.K.4
Vinther, J.5
Arctander, P.6
-
31
-
-
0029655320
-
Splicing removes the Caenorhabditis elegans transposon Tc1 from most mutant pre-mRNAs
-
Rushforth AM, Anderson P. 1996. Splicing removes the Caenorhabditis elegans transposon Tc1 from most mutant pre-mRNAs. Mol Cell Biol. 16:422-429.
-
(1996)
Mol Cell Biol
, vol.16
, pp. 422-429
-
-
Rushforth, A.M.1
Anderson, P.2
-
32
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Article3
-
Smyth GK. 2004. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol. 3(1):Article3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
, Issue.1
-
-
Smyth, G.K.1
-
33
-
-
0242333835
-
Normalization of cDNA microarray data
-
Smyth GK, Speed T. 2003. Normalization of cDNA microarray data. Methods. 31:265-273.
-
(2003)
Methods
, vol.31
, pp. 265-273
-
-
Smyth, G.K.1
Speed, T.2
-
34
-
-
0036064148
-
Alu-containing exons are alternatively spliced
-
Sorek R, Ast G, Graur D. 2002. Alu-containing exons are alternatively spliced. Genome Res. 12:1060-1067.
-
(2002)
Genome Res
, vol.12
, pp. 1060-1067
-
-
Sorek, R.1
Ast, G.2
Graur, D.3
-
35
-
-
1642473041
-
How prevalent is functional alternative splicing in the human genome?
-
Sorek R, Shamir R, Ast G. 2004. How prevalent is functional alternative splicing in the human genome? Trends Genet. 20:68-71.
-
(2004)
Trends Genet
, vol.20
, pp. 68-71
-
-
Sorek, R.1
Shamir, R.2
Ast, G.3
-
36
-
-
4243088097
-
-
Stein LD, Bao Z, Blasiar D, et al. (36 co-authors). 2003. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol. 1:E45.
-
Stein LD, Bao Z, Blasiar D, et al. (36 co-authors). 2003. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol. 1:E45.
-
-
-
-
37
-
-
34147165220
-
Recent human effective population size estimated from linkage disequilibrium
-
Tenesa A, Navarro P, Hayes BJ, Duffy DL, Clarke GM, Goddard ME, Visscher PM. 2007. Recent human effective population size estimated from linkage disequilibrium. Genome Res. 17:520-526.
-
(2007)
Genome Res
, vol.17
, pp. 520-526
-
-
Tenesa, A.1
Navarro, P.2
Hayes, B.J.3
Duffy, D.L.4
Clarke, G.M.5
Goddard, M.E.6
Visscher, P.M.7
-
38
-
-
0033831346
-
The fitness effects of spontaneous mutations in Caenorhabditis elegans
-
Vassilieva LL, Hook AM, Lynch M. 2000. The fitness effects of spontaneous mutations in Caenorhabditis elegans. Evol Int J Org Evol. 54:1234-1246.
-
(2000)
Evol Int J Org Evol
, vol.54
, pp. 1234-1246
-
-
Vassilieva, L.L.1
Hook, A.M.2
Lynch, M.3
-
39
-
-
42449098125
-
Splicing regulation: From a parts list of regulatory elements to an integrated splicing code
-
Wang Z, Burge CB. 2008. Splicing regulation: from a parts list of regulatory elements to an integrated splicing code. RNA. 14:802-813.
-
(2008)
RNA
, vol.14
, pp. 802-813
-
-
Wang, Z.1
Burge, C.B.2
-
40
-
-
33846511232
-
Modern origin of numerous alternatively spliced human introns from tandem arrays
-
Zhuo D, Madden R, Elela SA, Chabot B. 2007. Modern origin of numerous alternatively spliced human introns from tandem arrays. Proc Natl Acad Sci USA. 104:882-886.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 882-886
-
-
Zhuo, D.1
Madden, R.2
Elela, S.A.3
Chabot, B.4
|