메뉴 건너뛰기




Volumn 100, Issue 4, 2008, Pages 590-602

Phylogenetic relationships of Phytophthora andina, a new species from the highlands of Ecuador that is closely related to the Irish potato famine pathogen Phytophthora infestans

Author keywords

Oomycetes; Phytophthora; Potato; Stramenopiles

Indexed keywords

FUNGUS; HETEROGENEITY; HOST SPECIFICITY; MITOCHONDRIAL DNA; NEW SPECIES; PHYLOGENY; RELATEDNESS; TAXONOMY; UPLAND REGION;

EID: 54049104885     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/07-074R1     Document Type: Article
Times cited : (33)

References (66)
  • 1
    • 0030982323 scopus 로고    scopus 로고
    • Another look at the origin of late blight of potatoes, tomatoes, and pear melon in the Andes of South America
    • Abad ZG, Abad JA. 1997. Another look at the origin of late blight of potatoes, tomatoes, and pear melon in the Andes of South America. Plant Dis 81:682-688.
    • (1997) Plant Dis , vol.81 , pp. 682-688
    • Abad, Z.G.1    Abad, J.A.2
  • 3
    • 1942536014 scopus 로고    scopus 로고
    • Genetic diversity of Phytophthora infestans sensu lato in Ecuador provides new insight into the origin of this important plant pathogen
    • Adler NE, Erselius LJ, Chacon MG, Flier WG, Ordoñez ME, Kroon LPNM, Forbes GA. 2004. Genetic diversity of Phytophthora infestans sensu lato in Ecuador provides new insight into the origin of this important plant pathogen. Phytopathology 94:154-162.
    • (2004) Phytopathology , vol.94 , pp. 154-162
    • Adler, N.E.1    Erselius, L.J.2    Chacon, M.G.3    Flier, W.G.4    Ordoñez, M.E.5    Kroon, L.P.N.M.6    Forbes, G.A.7
  • 5
    • 0345343817 scopus 로고
    • Detection of Phytophthora cinnamomi in azalea with commercial serological assay kits
    • Benson DM. 1991. Detection of Phytophthora cinnamomi in azalea with commercial serological assay kits. Plant Dis 75:478-482.
    • (1991) Plant Dis , vol.75 , pp. 478-482
    • Benson, D.M.1
  • 6
    • 0002954639 scopus 로고
    • Observations, botanical and physiological on the potato murain
    • Berkeley MJ. 1846. Observations, botanical and physiological on the potato murain. J Hort Soc London 1:9-34.
    • (1846) J Hort Soc London , vol.1 , pp. 9-34
    • Berkeley, M.J.1
  • 7
    • 0027019315 scopus 로고
    • Evolutionary biology of Phytophthora II: Phylogeny, speciation and population structure
    • Brasier CM, Hansen EM. 1992. Evolutionary biology of Phytophthora II: Phylogeny, speciation and population structure. Ann Rev Phytopathol 30:173-200.
    • (1992) Ann Rev Phytopathol , vol.30 , pp. 173-200
    • Brasier, C.M.1    Hansen, E.M.2
  • 9
    • 0038075386 scopus 로고    scopus 로고
    • Multiple new phenotypic taxa from trees and riparian ecosystems in Phytophthora gonapodyides-P. megasperma ITS Clade 6, which tend to be high-temperature tolerant and either inbreeding or sterile
    • -, -, -, Hansen EM. 2003. Multiple new phenotypic taxa from trees and riparian ecosystems in Phytophthora gonapodyides-P. megasperma ITS Clade 6, which tend to be high-temperature tolerant and either inbreeding or sterile. Mycol Res 107:277-290.
    • (2003) Mycol Res , vol.107 , pp. 277-290
    • Brasier, C.M.1    Hansen, E.M.2    Cooke, D.E.L.3    Duncan, J.M.4    Hansen, E.M.5
  • 10
    • 0000665743 scopus 로고
    • The kingdom Chromista: Origin and systematics
    • Round FE, Chapman DJ, eds, Bristol, UK: Biopress Ltd. p
    • Cavalier-Smith TA. 1986. The kingdom Chromista: origin and systematics. In: Round FE, Chapman DJ, eds. Progress Phycological Research. Bristol, UK: Biopress Ltd. p 309-347.
    • (1986) Progress Phycological Research , pp. 309-347
    • Cavalier-Smith, T.A.1
  • 11
    • 33745697923 scopus 로고    scopus 로고
    • Genetic structure of the population of Phytophthora infestans attacking Solanum ochranthum in the highlands of Ecuador
    • Chacón MG, Adler NE, Jarrin F, Flier WG, Gessler C, Forbes GA. 2006. Genetic structure of the population of Phytophthora infestans attacking Solanum ochranthum in the highlands of Ecuador. Eur J Plant Pathol 115: 235-245.
    • (2006) Eur J Plant Pathol , vol.115 , pp. 235-245
    • Chacón, M.G.1    Adler, N.E.2    Jarrin, F.3    Flier, W.G.4    Gessler, C.5    Forbes, G.A.6
  • 12
    • 0030605251 scopus 로고    scopus 로고
    • Characterization of a Phytophthora infestans gene involved in vesicle transport
    • Chen Y, Roxby R. 1996. Characterization of a Phytophthora infestans gene involved in vesicle transport. Gene 181: 89-94.
    • (1996) Gene , vol.181 , pp. 89-94
    • Chen, Y.1    Roxby, R.2
  • 16
    • 0028361726 scopus 로고
    • PCR amplification of species-specific DNA sequences can distinguish among Phytophthora species
    • Ersek T, Shoeltz JE, English JT. 1994. PCR amplification of species-specific DNA sequences can distinguish among Phytophthora species. Appl Envir Microbiol 60:2616- 2621.
    • (1994) Appl Envir Microbiol , vol.60 , pp. 2616-2621
    • Ersek, T.1    Shoeltz, J.E.2    English, J.T.3
  • 18
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using bootstrap
    • Felsenstein J. 1985. Confidence limits on phylogenies: an approach using bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 22
    • 0025285105 scopus 로고
    • Mitochondrial and nuclear DNA diversity within six species of Phytophthora
    • Forster H, Oudemans P, Coffey MD. 1990. Mitochondrial and nuclear DNA diversity within six species of Phytophthora. Exp Mycol 12:18-31.
    • (1990) Exp Mycol , vol.12 , pp. 18-31
    • Forster, H.1    Oudemans, P.2    Coffey, M.D.3
  • 23
    • 0010994014 scopus 로고
    • Phytophthora mirabilis, a new species of Phytophthora
    • Galindo J, Hohl RH. 1985. Phytophthora mirabilis, a new species of Phytophthora. Sydowia 38:87-96.
    • (1985) Sydowia , vol.38 , pp. 87-96
    • Galindo, J.1    Hohl, R.H.2
  • 24
    • 33745368137 scopus 로고    scopus 로고
    • Genetic diversity and host differentiation among isolates of Phytophthora infestans from cultivated potato and wild solanaceous hosts in Peru
    • Garry G, Forbes GA, Salas A, Santa Cruz M, Perez WG, Nelson RJ. 2005. Genetic diversity and host differentiation among isolates of Phytophthora infestans from cultivated potato and wild solanaceous hosts in Peru. Plant Pathol 54:740-748.
    • (2005) Plant Pathol , vol.54 , pp. 740-748
    • Garry, G.1    Forbes, G.A.2    Salas, A.3    Santa Cruz, M.4    Perez, W.G.5    Nelson, R.J.6
  • 25
    • 0032412238 scopus 로고    scopus 로고
    • Origin and evolution of common bean: Past events and recent trends
    • Gepts P. 1998. Origin and evolution of common bean: past events and recent trends. Hort Sci 33:1124-1130.
    • (1998) Hort Sci , vol.33 , pp. 1124-1130
    • Gepts, P.1
  • 26
    • 33847647990 scopus 로고    scopus 로고
    • An Andean origin of Phytophthora infestans inferred from mito-chondrial and nuclear gene genealogies
    • Gómez-Alpizar L, Carbone I, Ristaino JB. 2007. An Andean origin of Phytophthora infestans inferred from mito-chondrial and nuclear gene genealogies. Proc Nat Acad Sci USA 104:3306-3311.
    • (2007) Proc Nat Acad Sci USA , vol.104 , pp. 3306-3311
    • Gómez-Alpizar, L.1    Carbone, I.2    Ristaino, J.B.3
  • 27
    • 0028275688 scopus 로고
    • Genetic analysis of interspecific hybrids between Phytophthora infestans and Phytophthora mirabilis
    • Goodwin SB, Fry W. 1994. Genetic analysis of interspecific hybrids between Phytophthora infestans and Phytophthora mirabilis. Exp Mycol 18:20-32.
    • (1994) Exp Mycol , vol.18 , pp. 20-32
    • Goodwin, S.B.1    Fry, W.2
  • 28
    • 0000905239 scopus 로고
    • Clonal diversity and genetic differentiation of Phytophthora infestans populations in northern and central Mexico
    • -, Spielman LJ, Matuszak JM, Bergeron SN, Fry WE. 1992. Clonal diversity and genetic differentiation of Phytophthora infestans populations in northern and central Mexico. Phytopathology 82:955-961.
    • (1992) Phytopathology , vol.82 , pp. 955-961
    • Goodwin, S.B.1    Fry, W.2    Spielman, L.J.3    Matuszak, J.M.4    Bergeron, S.N.5    Fry, W.E.6
  • 30
    • 0031663429 scopus 로고    scopus 로고
    • Polymorphisms in Phytophthora infestans: Four mitochondrial haplotypes are detected after PCR amplification of DNA from pure cultures or from host lesions
    • Griffith GW, Shaw DS. 1998. Polymorphisms in Phytophthora infestans: four mitochondrial haplotypes are detected after PCR amplification of DNA from pure cultures or from host lesions. Appl Envir Micro 64:4007-4014.
    • (1998) Appl Envir Micro , vol.64 , pp. 4007-4014
    • Griffith, G.W.1    Shaw, D.S.2
  • 31
    • 24944450335 scopus 로고    scopus 로고
    • The biology of Phytophthora infestans at its center of origin
    • Grünwald NJ, Flier WG. 2005. The biology of Phytophthora infestans at its center of origin. Annu Rev Phytopathol 43:171-190.
    • (2005) Annu Rev Phytopathol , vol.43 , pp. 171-190
    • Grünwald, N.J.1    Flier, W.G.2
  • 34
    • 67650974043 scopus 로고    scopus 로고
    • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nuc Acids Symp 41:95-98.
    • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nuc Acids Symp 41:95-98.
  • 35
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Huelsenbeck JP, Ronquist F. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinfor-matics 19:1572-4.
    • (2003) Bioinfor-matics , vol.19 , pp. 1572-1574
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 37
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 38
    • 0041666538 scopus 로고    scopus 로고
    • Single-strand- conformation polymorphism of the ribosomal DNA for rapid species differentiation in the genus Phytophthora
    • Kong P, Hong C, Richardson PA, Gallegly ME. 2003. Single-strand- conformation polymorphism of the ribosomal DNA for rapid species differentiation in the genus Phytophthora. Fungal Gen Biol 39:238-249.
    • (2003) Fungal Gen Biol , vol.39 , pp. 238-249
    • Kong, P.1    Hong, C.2    Richardson, P.A.3    Gallegly, M.E.4
  • 40
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: Molecular evolutionary genetics analysis software
    • Kumar S, Tamura K, Jakobsen IB, Nei M. 2001. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245.
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 41
    • 0003073646 scopus 로고
    • The mitochondrial genome of Phytophthora infestans
    • O'Brien SJ, ed, New York: Cold Spring Harbor Laboratory Press. p
    • Lang BF, Forget L. 1993. The mitochondrial genome of Phytophthora infestans. In: O'Brien SJ, ed. Genetic maps: locus maps of complex genomes. New York: Cold Spring Harbor Laboratory Press. p 3.133-3.135.
    • (1993) Genetic maps: Locus maps of complex genomes
    • Lang, B.F.1    Forget, L.2
  • 42
    • 0037656232 scopus 로고    scopus 로고
    • Phylogenetic relationships among Phytophthora species inferred from sequence analysis of mitochondrially encoded cytochrome oxi-dase I and II genes
    • Martin FN, Tooley PW. 2003. Phylogenetic relationships among Phytophthora species inferred from sequence analysis of mitochondrially encoded cytochrome oxi-dase I and II genes. Mycologia 95:269-284.
    • (2003) Mycologia , vol.95 , pp. 269-284
    • Martin, F.N.1    Tooley, P.W.2
  • 43
    • 4344695318 scopus 로고    scopus 로고
    • Identification of Phytophthora isolates to species level using restriction fragment length polymorphism analysis of polymerase chain reaction-amplified region of mitochondrial DNA
    • -, -. 2004. Identification of Phytophthora isolates to species level using restriction fragment length polymorphism analysis of polymerase chain reaction-amplified region of mitochondrial DNA. Phytopathology 94:983-991.
    • (2004) Phytopathology , vol.94 , pp. 983-991
    • Martin, F.N.1    Tooley, P.W.2
  • 44
    • 2942588943 scopus 로고    scopus 로고
    • Identity of the mtDNA haplo-type(s) of Phytophthora infestans in historical specimens from the Irish potato famine
    • May K, Ristaino JB. 2004. Identity of the mtDNA haplo-type(s) of Phytophthora infestans in historical specimens from the Irish potato famine. Mycol Res 108:471- 479.
    • (2004) Mycol Res , vol.108 , pp. 471-479
    • May, K.1    Ristaino, J.B.2
  • 45
    • 0002110933 scopus 로고
    • Taxonomic structure of Phytophthora cryptogea and P. dreschsleri based on isozyme and mitochondrial DNA analysis
    • Mills SD, Forster H, Coffey MD. 1991. Taxonomic structure of Phytophthora cryptogea and P. dreschsleri based on isozyme and mitochondrial DNA analysis. Mycol Res 95: 31-48.
    • (1991) Mycol Res , vol.95 , pp. 31-48
    • Mills, S.D.1    Forster, H.2    Coffey, M.D.3
  • 47
    • 0002512647 scopus 로고
    • Phytophthora infestans: The Mexican connection
    • Lucas JA, Shattock RC, Shaw DS, Cooke LR, eds, Cambridge, UK: Cambridge University Press. p
    • Niederhauser JS. 1991. Phytophthora infestans: the Mexican connection. In: Lucas JA, Shattock RC, Shaw DS, Cooke LR, eds. Phytophthora. Cambridge, UK: Cambridge University Press. p 25-45.
    • (1991) Phytophthora , pp. 25-45
    • Niederhauser, J.S.1
  • 48
    • 0036918952 scopus 로고    scopus 로고
    • Potential of sexual reproduction among host-adapted populations of Phytophthora infestans sensu lato in Ecuador
    • Oliva RF, Erselius LJ, Adler NE, Forbes GA. 2002. Potential of sexual reproduction among host-adapted populations of Phytophthora infestans sensu lato in Ecuador. Plant Pathol 51:710-719.
    • (2002) Plant Pathol , vol.51 , pp. 710-719
    • Oliva, R.F.1    Erselius, L.J.2    Adler, N.E.3    Forbes, G.A.4
  • 50
    • 0242352334 scopus 로고    scopus 로고
    • Characterization of the glucose-6-phosphate isomerase gene in Phytophthora infestans reveals the presence of multiple alleles
    • Ospina-Giraldo MD, Jones RW. 2003. Characterization of the glucose-6-phosphate isomerase gene in Phytophthora infestans reveals the presence of multiple alleles. Fungal Gen Biol 40:197-206.
    • (2003) Fungal Gen Biol , vol.40 , pp. 197-206
    • Ospina-Giraldo, M.D.1    Jones, R.W.2
  • 51
    • 0028944680 scopus 로고
    • NiaA, the structural nitrate reductase gene of Phytophthora infestans: Isolation, characterization and expression analysis in Aspergillus nidulans
    • Pieterse CM, van't Klooster J, van den Berg-Velthuis GC, Govers F. 1995. NiaA, the structural nitrate reductase gene of Phytophthora infestans: isolation, characterization and expression analysis in Aspergillus nidulans. Curr Gen 27:359-366.
    • (1995) Curr Gen , vol.27 , pp. 359-366
    • Pieterse, C.M.1    van't Klooster, J.2    van den Berg-Velthuis, G.C.3    Govers, F.4
  • 52
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 53
    • 67650964407 scopus 로고    scopus 로고
    • Rajapakse S, Nilmalgoda SD, Molnar M, Ballard RE, Austin
    • Rajapakse S, Nilmalgoda SD, Molnar M, Ballard RE, Austin
  • 54
    • 1342311267 scopus 로고    scopus 로고
    • DF, Bohac JR. 2004. Phylogenetic relationships of the sweet potato in Ipomoea series Batatas (Convolvula-ceae) based on nuclear b-amylase gene sequences. Mol Phylogenet Evol 30:623-632.
    • DF, Bohac JR. 2004. Phylogenetic relationships of the sweet potato in Ipomoea series Batatas (Convolvula-ceae) based on nuclear b-amylase gene sequences. Mol Phylogenet Evol 30:623-632.
  • 55
    • 0031934217 scopus 로고    scopus 로고
    • PCR amplification of ribosomal DNA species identification in the plant pathogen genus Phytophthora
    • Ristaino JB, Madritch M, Trout CL, Parra G. 1998. PCR amplification of ribosomal DNA species identification in the plant pathogen genus Phytophthora. Appl Envir Micro 64:948-954.
    • (1998) Appl Envir Micro , vol.64 , pp. 948-954
    • Ristaino, J.B.1    Madritch, M.2    Trout, C.L.3    Parra, G.4
  • 57
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 59
    • 34547781750 scopus 로고    scopus 로고
    • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599
    • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599.
  • 61
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Acid Res 24:4876- 4882.
    • (1997) Nucl Acid Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 62
    • 0030804086 scopus 로고    scopus 로고
    • Rapid detection of Phytophthora infestans in late blight-infected potato and tomato using PCR
    • Trout CL, Ristaino JB, Madritch M, Wangsomboondee T. 1997. Rapid detection of Phytophthora infestans in late blight-infected potato and tomato using PCR. Plant Dis 81:1042-1048.
    • (1997) Plant Dis , vol.81 , pp. 1042-1048
    • Trout, C.L.1    Ristaino, J.B.2    Madritch, M.3    Wangsomboondee, T.4
  • 64
    • 0037344551 scopus 로고    scopus 로고
    • Sequence variation of inter-genic mitochondrial DNA spacers (mtDNA-IGS) of Phytophthora infestans (Oomycetes) and related species
    • Wattier RAM, Gathercole LL, Assinder SJ, Gliddon CJ, Deahl KL, Shaw DS, Mills DI. 2003. Sequence variation of inter-genic mitochondrial DNA spacers (mtDNA-IGS) of Phytophthora infestans (Oomycetes) and related species. Mol Ecol Note 3:136-138.
    • (2003) Mol Ecol Note , vol.3 , pp. 136-138
    • Wattier, R.A.M.1    Gathercole, L.L.2    Assinder, S.J.3    Gliddon, C.J.4    Deahl, K.L.5    Shaw, D.S.6    Mills, D.I.7
  • 65
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis MA, Gelfand DH, Sninsky J, White TJ, eds, San Diego: Academic Press. p
    • White TJ, Bruns T, Lee SB, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky J, White TJ, eds. PCR protocols: a guide to methods and applications. San Diego: Academic Press. p 315-322.
    • (1990) PCR protocols: A guide to methods and applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.B.3    Taylor, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.