Structural propensities in the heme binding region of apocytochrome b5. I. Free peptides

Biopolymers - Peptide Science Section

Volumn 90, Issue 4, 2008, Pages 544-555

  Davis Jr , Ronald B ^a,b   Lecomte, Juliette T J ^a,c  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

^b AMERICAN UNIVERSITY   (United States)

^c JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Apo hemeprotein; Coil helix equilibria; Intrinsic disorder; Trifluoroethanol

Indexed keywords

APO CYTOCHROME; APO HEMEPROTEIN; COIL-HELIX EQUILIBRIA; HEME-BINDING; INTRINSIC DISORDER; MICROSOMAL CYTOCHROME; TRIFLUOROETHANOL;

PORPHYRINS;

CYTOCHROME B5; HEME; PEPTIDE; PEPTIDE BLP 42; TRIFLUOROETHANOL; UNCLASSIFIED DRUG;

ALGORITHM; ALPHA HELIX; AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; BINDING SITE; CIRCULAR DICHROISM; NUCLEAR MAGNETIC RESONANCE; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN PROTEIN INTERACTION; PROTEIN SECONDARY STRUCTURE; PROTEIN STABILITY; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; CIRCULAR DICHROISM; CYTOCHROMES B5; HEME; HISTIDINE; MAGNETIC RESONANCE SPECTROSCOPY; MOLECULAR SEQUENCE DATA; PEPTIDES; PROTEIN STRUCTURE, SECONDARY; RATS; SOLUBILITY; SOLUTIONS; TRIFLUOROETHANOL;

RATTUS;

EID: 52949092250     PISSN: 00063525     EISSN: 10970282     Source Type: Journal    
DOI: 10.1002/bip.20996     Document Type: Article

References (59)

1. Neri, D.; Billeter, M.; Wider, C.; Wüthrich, K. Science 1992, 257, 1559-1563.
2. McCarney, E. R.; Kohn, J. E.; Plaxco, K. W. Crit Rev Biochem Mol Biol 2005, 40, 181-189.
3. Bowler, B. E. Mol Biosyst 2007, 3, 88-99.
4. Cho, J. H.; Sato, S.; Raleigh, D. P. J Mol Biol 2004, 338, 827-837.
5. Kohn, J. E.; Millett, I. S.; Jacob, J.; Zagrovic, B.; Dillon, T. M.; Cingel, N.; Dothager, R. S.; Seifert, S.; Thiyagarajan, P.; Sosnick, T. R.; Hasan, M. Z.; Pande, V. S.; Ruczinski, I.; Doniach, S.; Plaxco, K. W. Proc Natl Acad Sci USA 2004, 101, 12491-12496.
6. Le Duff, C. S.; Whittaker, S. B.; Radford, S. E.; Moore, G. R. J Mol Biol 2006, 364, 824-835.
7. Demarest, S. J.; Raleigh, D. P. Proteins 2000, 38, 189-196.
8. Demarest, S. J.; Hua, Y.; Raleigh, D. P. Biochemistry 1999, 38, 7380-7387.
9. Landfried, D. A.; Vuletich, D. A.; Pond, M. P.; Lecomte, J. T. J. Gene 2007, 398, 12-28.
10. D'Amelio, N.; Bonvin, A. M.; Czisch, M.; Barker, P.; Kaptein, R. Biochemistry 2002, 41, 5505-5514.
11. Mathews, F. S.; Czerwin ski, E. W. In The Enzymes of Biological Membranes; Martosi, A., Ed.; Plenum Press: New York, 1985; pp 143-197.
12. Mathews, F. S.; Argos, P.; Levine, M. Cold Spring Harb Symp Quant Biol 1972, 36, 387-395.
13. Arnesano, F.; Banci, L.; Bertini, I.; Felli, I. C. Biochemistry 1998, 37, 173-184.
14. Falzone, C. J.; Wang, Y.; Vu, B. C.; Scott, N. L.; Bhattacharya, S.; Lecomte, J. T. J. Biochemistry 2001, 40, 4879-4891.
15. Dosztanyi, Z.; Csizmok, V.; Tompa, P.; Simon, I. Bioinformatics 2005, 21, 3433-3434.
16. Obradovic, Z.; Peng, K.; Vucetic, S.; Radivojac, P.; Dunker, A. K. Proteins 2005, 61 Suppl 7, 176-182.
17. Peng, K.; Radivojac, P.; Vucetic, S.; Dunker, A. K.; Obradovic, Z. BMC Bioinformatics 2006, 7, 208.
18. Chan, H. S.; Dill, K. A. J Chem Phys 1989, 90, 492-509.
19. Knappenberger, J. A.; Kraemer-Pecore, C. M.; Lecomte, J. T. J. Protein Sci 2004, 13, 2899-2908.
20. Knappenberger, J. A.; Lecomte, J. T. J. Protein Sci 2007, 16, 863-879.
21. Mukhopadhyay, K.; Lecomte, J. T. J. Biochemistry 2004, 43, 12227-12236.
22. Lecomte, J. T. J.; Mukhopadhyay, K.; Pond, M. P. Biopolymers 2008, 89, 428-442.
23. Roccatano, D.; Colombo, G.; Fioroni, M.; Mark, A. E. Proc Natl Acad Sci USA 2002, 99, 12179-12184.
24. Buck, M. Q Rev Biophys 1998, 31, 297-355.
25. Bodkin, M. J.; Goodfellow, J. M. Biopolymers 1996, 39, 43-50.
26. Durley, R. C.; Mathews, F. S. Acta Crystallogr D Biol Crystallogr 1996, 52, 65-76.
27. Banci, L.; Bertini, I.; Ferroni, F.; Rosato, A. Eur J Biochem 1997, 249, 270-279.
28. Chen, Y. H.; Yang, J. T.; Chau, K. H. Biochemistry 1974, 13, 3350-3359.
29. Luidens, M. K.; Figge, J.; Breese, K.; Vajda, S. Biopolymers 1996, 39, 367-376.
30. Rose, G. D.; Gierasch, L. M.; Smith, J. A. Adv Protein Chem 1985, 37, 1-109.
31. Marqusee, S.; Baldwin, R. L. Proc Natl Acad Sci USA 1987, 84, 8898-8902.
32. Lacroix, E.; Viguera, A. R.; Serrano, L. J Mol Biol 1998, 284, 173-191.
33. Brahms, S.; Brahms, J.; Spach, G.; Brack, A. Proc Natl Acad Sci USA 1977, 74, 3208-3212.
34. Canutescu, A. A.; Shelenkov, A. A.; Dunbrack, R. L., Jr. Protein Sci 2003, 12, 2001-2014.
35. Rance, M.; Sørensen, O. W; Bodenhausen, G.; Wagner, G.; Ernst, R. R.; Wüthrich, K. Biochem Biophys Res Commun 1983, 117, 479-485.
36. Braunschweiler, L.; Ernst, R. R. J Magn Reson 1983, 53, 521-528.
37. Rance, M. J Magn Reson 1987, 74, 557-564.
38. Kumar, A.; Ernst, R. R.; Wüthrich, K. Biochem Biophys Res Commun 1980, 95, 1-6.
39. Bodenhausen, G.; Kogler, H.; Ernst, R. R. J Magn Reson 1984, 58, 370-388.
40. Wüthrich, K. NMR of Proteins and Nucleic Acids; Wiley: New York, 1986.
41. Moore, C. D.; al-Misky, O. N.; Lecomte, J. T. J. Biochemistry 1991, 30, 8357-8365.
42. Rohl, C. A.; Chakrabartty, A.; Baldwin, R. L. Protein Sci 1996, 5, 2623-2637.
43. Storrs, R. W.; Truckses, D.; Wemmer, D. E. Biopolymers 1992, 32, 1695-1702.
44. Bhattacharya, S.; Falzone, C. J.; Lecomte, J. T. J. Biochemistry 1999, 38, 2577-2589.
45. Ihara, M.; Takahashi, S.; Ishimori, K.; Morishima, I. Biochemistry 2000, 39, 5961-5970.
46. Padmanabhan, S.; Jimenez, M. A.; Rico, M. Protein Sci 1999, 8, 1675-1688.
47. Sönnichsen, F. D.; Van Eyk, J. E.; Hodges, R. S.; Sykes, B. D. Biochemistry 1992, 31, 8790-8798.
48. Blanco, F. J.; Ortiz, A. R.; Serrano, L. Fold Des 1997, 2, 123-133.
49. Davis, R. B., Jr.; Lecomte, J. T. J. Proteins 2006, 63, 336-348.
50. Pace, C. N.; Vajdos, F.; Fee, L.; Grimsley, G.; Gray, T. Protein Sci 1995, 4, 2411-2423.
51. Holtzer, M. E.; Holtzer, A. Biopolymers 1992, 32, 1675-1677.
52. Creighton, T. E. Proteins. Structures and Molecular Properties; W.H. Freeman: New York, 1993.
53. Piotto, M.; Saudek, V.; Sklenár, V. J Biomol NMR 1992, 2, 661-665.
54. Sklenár, V.; Piotto, M.; Leppik, R.; Saudek, V. J Magn Reson 1993, 102, 241-245.
55. Cavanagh, J.; Rance, M. J Magn Res 1992, 96, 670-678.
56. Goddard, T. D.; Kneller, D. G. SPARKY 3; University of California, San Francisco, 2006.
57. Schwarzinger, S.; Kroon, G. J.; Foss, T. R.; Chung, J.; Wright, P. E.; Dyson, H. J. J Am Chem Soc 2001, 123, 2970-2978.
58. Krezel, A.; Bal, W. J Inorg Biochem 2004, 98, 161-166.
59. Kraulis, P. J Appl Crystallogr 1991, 24, 946-950.