메뉴 건너뛰기




Volumn 36, Issue 16, 2008, Pages 5306-5318

Intragenic suppressors of temperature-sensitive rne mutations lead to the dissociation of RNase E activity on mRNA and tRNA substrates in Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; ARGININE; CYSTINE; GLYCINE; LEUCINE; MESSENGER RNA; PHENYLALANINE; RIBONUCLEASE E; RIBOSOME RNA; RNA 9S; TRANSFER RNA; UNCLASSIFIED DRUG;

EID: 52649171479     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn476     Document Type: Article
Times cited : (19)

References (69)
  • 1
    • 0036549769 scopus 로고    scopus 로고
    • The Escherichia coli degradosome: Structure, function and relationship to other ribonucleolytic multienzyme complexes
    • Carpousis,A.J. (2002) The Escherichia coli degradosome: Structure, function and relationship to other ribonucleolytic multienzyme complexes. Biochem. Soc. Trans., 30, 150-155.
    • (2002) Biochem. Soc. Trans , vol.30 , pp. 150-155
    • Carpousis, A.J.1
  • 2
    • 0036719292 scopus 로고    scopus 로고
    • mRNA decay in Escherichia coli comes of age
    • Kushner,S.R. (2002) mRNA decay in Escherichia coli comes of age. J. Bacteriol., 184, 4658-4665.
    • (2002) J. Bacteriol , vol.184 , pp. 4658-4665
    • Kushner, S.R.1
  • 3
    • 0033636189 scopus 로고    scopus 로고
    • Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly
    • Ow,M.C., Liu,Q. and Kushner,S.R. (2000) Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly. Mol. Microbiol., 38, 854-866.
    • (2000) Mol. Microbiol , vol.38 , pp. 854-866
    • Ow, M.C.1    Liu, Q.2    Kushner, S.R.3
  • 4
    • 0024095739 scopus 로고
    • Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12
    • Arraiano,C.M., Yancey,S.D. and Kushner,S.R. (1988) Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12. J. Bacteriol., 170, 4625-4633.
    • (1988) J. Bacteriol , vol.170 , pp. 4625-4633
    • Arraiano, C.M.1    Yancey, S.D.2    Kushner, S.R.3
  • 5
    • 1542267833 scopus 로고    scopus 로고
    • Global analysis of Escherichia coli RNA degradosome function using DNA microarrays
    • Bernstein,J.A., Lin,P.-H., Cohen,S.N. and Lin-Chao,S. (2004) Global analysis of Escherichia coli RNA degradosome function using DNA microarrays. Proc. Natl Acad. Sci. USA, 101, 2748-2763.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 2748-2763
    • Bernstein, J.A.1    Lin, P.-H.2    Cohen, S.N.3    Lin-Chao, S.4
  • 6
    • 0017887243 scopus 로고
    • A conditional lethal mutant of Escherichia coli which affects the processing of ribosomal RNA
    • Apirion,D. and Lasser,A.B. (1978) A conditional lethal mutant of Escherichia coli which affects the processing of ribosomal RNA. J. Biol. Chem., 253, 1738-1742.
    • (1978) J. Biol. Chem , vol.253 , pp. 1738-1742
    • Apirion, D.1    Lasser, A.B.2
  • 7
    • 0036210631 scopus 로고    scopus 로고
    • RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors
    • Li,Z. and Deutscher,M.P. (2002) RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors. RNA, 8 97-109.
    • (2002) RNA , vol.8 , pp. 97-109
    • Li, Z.1    Deutscher, M.P.2
  • 8
    • 0036571060 scopus 로고    scopus 로고
    • Initiation of tRNA maturation by RNase E is essential for cell viability in Escherichia coli
    • Ow,M.C. and Kushner,S.R. (2002) Initiation of tRNA maturation by RNase E is essential for cell viability in Escherichia coli. Genes Dev., 16, 1102-1115.
    • (2002) Genes Dev , vol.16 , pp. 1102-1115
    • Ow, M.C.1    Kushner, S.R.2
  • 9
    • 0032578486 scopus 로고    scopus 로고
    • The endoribonucleolytic N-terminal half of Escherichia coli RNase E is evolutionarily conserved in Synechocystis sp. and other bacteria but not the C-terminal half, which is sufficient for degradosome assembly
    • Kaberdin,V.R., Miczak,A., Jakobsen,J.S., Lin-Chao,S., McDowall,K.J. and von Gabain,A. (1998) The endoribonucleolytic N-terminal half of Escherichia coli RNase E is evolutionarily conserved in Synechocystis sp. and other bacteria but not the C-terminal half, which is sufficient for degradosome assembly. Proc. Natl Acad. Sci. USA, 95, 11637-11642.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 11637-11642
    • Kaberdin, V.R.1    Miczak, A.2    Jakobsen, J.S.3    Lin-Chao, S.4    McDowall, K.J.5    von Gabain, A.6
  • 11
    • 0028269435 scopus 로고
    • Copurification of E. coli RNAase E and PNPase: Evidence for a specific association between two enzymes important in RNA processing and degradation
    • Carpousis,A.J., Van Houwe,G., Ehretsmann,C. and Krisch,H.M. (1994) Copurification of E. coli RNAase E and PNPase: Evidence for a specific association between two enzymes important in RNA processing and degradation. Cell, 76, 889-900.
    • (1994) Cell , vol.76 , pp. 889-900
    • Carpousis, A.J.1    Van Houwe, G.2    Ehretsmann, C.3    Krisch, H.M.4
  • 12
    • 0029922992 scopus 로고    scopus 로고
    • A DEAD-box RNA helicase in the Escherichia coli RNA degradesome
    • Py,B., Higgins,C.F., Krisch,H.M. and Carpousis,A.J. (1996) A DEAD-box RNA helicase in the Escherichia coli RNA degradesome. Nature 381, 169-172.
    • (1996) Nature , vol.381 , pp. 169-172
    • Py, B.1    Higgins, C.F.2    Krisch, H.M.3    Carpousis, A.J.4
  • 13
    • 0027945686 scopus 로고
    • A protein complex mediating mRNA degradation in Escherichia coli
    • Py,B., Causton,H., Mudd,E.A. and Higgins,C.F. (1994) A protein complex mediating mRNA degradation in Escherichia coli. Mol. Microbiol., 14, 717-729.
    • (1994) Mol. Microbiol , vol.14 , pp. 717-729
    • Py, B.1    Causton, H.2    Mudd, E.A.3    Higgins, C.F.4
  • 14
    • 0029976430 scopus 로고    scopus 로고
    • Proteins associated with RNase E in a multicomponent ribonucleolytic complex
    • Miczak,A., Kaberdin,V.R., Wei,C.-L. and Lin-Chao,S. (1996) Proteins associated with RNase E in a multicomponent ribonucleolytic complex. Proc. Natl Acad. Sci. USA, 93, 3865-3869.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 3865-3869
    • Miczak, A.1    Kaberdin, V.R.2    Wei, C.-L.3    Lin-Chao, S.4
  • 15
    • 1242342956 scopus 로고    scopus 로고
    • The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers
    • Khemici,V. and Carpousis,A.J. (2004) The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers. Mol. Microbiol., 51, 777-790.
    • (2004) Mol. Microbiol , vol.51 , pp. 777-790
    • Khemici, V.1    Carpousis, A.J.2
  • 16
    • 0036047092 scopus 로고    scopus 로고
    • Function in Escherichia coli of the non-catalytic part of RNase E: Role in the degradation of ribosome-free mRNA
    • Leroy,A., Vanzo,N.F., Sousa,S., Dreyfus,M. and Carpousis,A.J. (2002) Function in Escherichia coli of the non-catalytic part of RNase E: role in the degradation of ribosome-free mRNA. Mol. Microbiol., 45, 1231-1243.
    • (2002) Mol. Microbiol , vol.45 , pp. 1231-1243
    • Leroy, A.1    Vanzo, N.F.2    Sousa, S.3    Dreyfus, M.4    Carpousis, A.J.5
  • 17
    • 0032569032 scopus 로고    scopus 로고
    • Reconstitution of the degradation of the mRNA for ribosomal protein S20 with purified enzymes
    • Coburn,G.A. and Mackie,G.A. (1998) Reconstitution of the degradation of the mRNA for ribosomal protein S20 with purified enzymes. J. Mol. Biol., 279, 1061-1074.
    • (1998) J. Mol. Biol , vol.279 , pp. 1061-1074
    • Coburn, G.A.1    Mackie, G.A.2
  • 18
    • 0033214259 scopus 로고    scopus 로고
    • Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3' exonuclease and a DEAD-box RNA helicase
    • Coburn,G.A., Miao,X., Briant,D.J. and Mackie,G.A. (1999) Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3' exonuclease and a DEAD-box RNA helicase. Genes Dev., 13, 2594-2603.
    • (1999) Genes Dev , vol.13 , pp. 2594-2603
    • Coburn, G.A.1    Miao, X.2    Briant, D.J.3    Mackie, G.A.4
  • 19
    • 0036050882 scopus 로고    scopus 로고
    • Polyadenylation of Escherichia coli transcripts plays an integral role in regulating intracellular levels of polynucleotide phosphorylase and RNase E
    • Mohanty,B.K. and Kushner,S.R. (2002) Polyadenylation of Escherichia coli transcripts plays an integral role in regulating intracellular levels of polynucleotide phosphorylase and RNase E. Mol. Microbiol. 45, 1315-1324.
    • (2002) Mol. Microbiol , vol.45 , pp. 1315-1324
    • Mohanty, B.K.1    Kushner, S.R.2
  • 20
    • 0033048415 scopus 로고    scopus 로고
    • The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo
    • Lopez,P.J., Marchand,I., Joyce,S.A. and Dreyfus,M. (1999) The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo. Mol. Microbiol., 33, 188-199.
    • (1999) Mol. Microbiol , vol.33 , pp. 188-199
    • Lopez, P.J.1    Marchand, I.2    Joyce, S.A.3    Dreyfus, M.4
  • 21
    • 0028797303 scopus 로고
    • RNase E autoregulates its synthesis by controlling the degradation rate of its own mRNA in Escherichia coli unusual sensitivity of the rne transcript to RNase E activity
    • Jain,C. and Belasco,J.G. (1995) RNase E autoregulates its synthesis by controlling the degradation rate of its own mRNA in Escherichia coli unusual sensitivity of the rne transcript to RNase E activity. Genes Dev., 9, 84-96.
    • (1995) Genes Dev , vol.9 , pp. 84-96
    • Jain, C.1    Belasco, J.G.2
  • 22
    • 0037036432 scopus 로고    scopus 로고
    • Critical features of a conserved RNA stem-loop important for feedback regulation of RNase E synthesis
    • Diwa,A. and Belasco,J.G. (2002) Critical features of a conserved RNA stem-loop important for feedback regulation of RNase E synthesis. J. Biol. Chem., 277, 20415-20422.
    • (2002) J. Biol. Chem , vol.277 , pp. 20415-20422
    • Diwa, A.1    Belasco, J.G.2
  • 23
    • 27144495430 scopus 로고    scopus 로고
    • Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover
    • Callaghan,A.J., Marcaida,M.J., Stead,J.A., McDowall,K.J., Scott,W.G. and Luisi,B.F. (2005) Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover. Nature, 437, 1187-1191.
    • (2005) Nature , vol.437 , pp. 1187-1191
    • Callaghan, A.J.1    Marcaida, M.J.2    Stead, J.A.3    McDowall, K.J.4    Scott, W.G.5    Luisi, B.F.6
  • 24
    • 0031471204 scopus 로고    scopus 로고
    • The solution structure of the S1 RNA binding domain: A member of an ancient nucleic acid-binding fold
    • Bycroft,M., Hubbard,T.J.P., Proctor,M., Freund,S.M.V. and Murzin,A.G. (1997) The solution structure of the S1 RNA binding domain: A member of an ancient nucleic acid-binding fold. Cell, 88, 235-242.
    • (1997) Cell , vol.88 , pp. 235-242
    • Bycroft, M.1    Hubbard, T.J.P.2    Proctor, M.3    Freund, S.M.V.4    Murzin, A.G.5
  • 27
    • 3042645502 scopus 로고    scopus 로고
    • Catalytic activation of multimeric RNase E and RNase G by 5'-monophosphorylated RNA
    • Jiang,X. and Belasco,J.G. (2004) Catalytic activation of multimeric RNase E and RNase G by 5'-monophosphorylated RNA. Proc. Natl Acad. Sci. USA, 101, 9211-9216.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 9211-9216
    • Jiang, X.1    Belasco, J.G.2
  • 28
    • 0018791193 scopus 로고
    • A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of mRNA
    • Ono,M. and Kuwano,M. (1979) A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of mRNA. J. Mol. Biol., 129, 343-357.
    • (1979) J. Mol. Biol , vol.129 , pp. 343-357
    • Ono, M.1    Kuwano, M.2
  • 29
    • 0027273009 scopus 로고
    • The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause sub-stitutions within a domain that resembles a product of the Escherichia coli rne locus
    • McDowall,K.J., Hernandez,R.G., Lin-Chao,S. and Cohen,S.N. (1993) The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause sub-stitutions within a domain that resembles a product of the Escherichia coli rne locus. J. Bacteriol., 175, 4245-4249.
    • (1993) J. Bacteriol , vol.175 , pp. 4245-4249
    • McDowall, K.J.1    Hernandez, R.G.2    Lin-Chao, S.3    Cohen, S.N.4
  • 30
    • 0029295957 scopus 로고
    • Processing of the precursor to the catalytic RNA subunit of RNase P from Escherichia coli
    • Lundberg,U. and Altman,S. (1995) Processing of the precursor to the catalytic RNA subunit of RNase P from Escherichia coli. RNA, 1 327-334.
    • (1995) RNA , vol.1 , pp. 327-334
    • Lundberg, U.1    Altman, S.2
  • 31
    • 0033607239 scopus 로고    scopus 로고
    • RNase E is required for the maturation of ssrA and normal ssrA RNA peptide-tagging activity
    • Lin-Chao,S., Wei,C.-L. and Lin,Y.-T. (1999) RNase E is required for the maturation of ssrA and normal ssrA RNA peptide-tagging activity. Proc. Natl Acad. Sci. USA, 96, 12406-12411.
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 12406-12411
    • Lin-Chao, S.1    Wei, C.-L.2    Lin, Y.-T.3
  • 32
    • 0031020242 scopus 로고    scopus 로고
    • Functional relationship between Escherichia coli RNase E and the CafA protein
    • Wachi,M., Umitsuki,G. and Nagai,K. (1997) Functional relationship between Escherichia coli RNase E and the CafA protein. Mol. Gen. Genet., 253, 515-519.
    • (1997) Mol. Gen. Genet , vol.253 , pp. 515-519
    • Wachi, M.1    Umitsuki, G.2    Nagai, K.3
  • 33
    • 0027955358 scopus 로고
    • Cytoplasmic axial filaments in Escherichia coli cells: Possible function in the mechanism of chromosome segregation and cell division
    • Okada,Y., Wachi,M., Hirata,A., Suzuki,K., Nagai,K. and Matsuhashi,M. (1994) Cytoplasmic axial filaments in Escherichia coli cells: possible function in the mechanism of chromosome segregation and cell division. J. Bacteriol., 176, 917-922.
    • (1994) J. Bacteriol , vol.176 , pp. 917-922
    • Okada, Y.1    Wachi, M.2    Hirata, A.3    Suzuki, K.4    Nagai, K.5    Matsuhashi, M.6
  • 34
    • 0034708447 scopus 로고    scopus 로고
    • The CafA protein required for the 5′-maturation of 16 S rRNA is a 5′-end-dependent ribonuclease that has context-dependent broad sequence specificity
    • Tock,M.R., Walsh,A.P., Carroll,G. and McDowall,K.J. (2000) The CafA protein required for the 5′-maturation of 16 S rRNA is a 5′-end-dependent ribonuclease that has context-dependent broad sequence specificity. J. Biol. Chem., 275, 8726-8732.
    • (2000) J. Biol. Chem , vol.275 , pp. 8726-8732
    • Tock, M.R.1    Walsh, A.P.2    Carroll, G.3    McDowall, K.J.4
  • 35
    • 1442325396 scopus 로고    scopus 로고
    • The function of RNase G in Escherichia coli is constrained by its amino and carboxyl termini
    • Deana,A. and Belasco,J.G. (2004) The function of RNase G in Escherichia coli is constrained by its amino and carboxyl termini. Mol. Microbiol., 51, 1205-1217.
    • (2004) Mol. Microbiol , vol.51 , pp. 1205-1217
    • Deana, A.1    Belasco, J.G.2
  • 36
    • 0042665928 scopus 로고    scopus 로고
    • RNase G of Escherichia coli exhibits only limited functional overlap with its essential homologue, RNase E
    • Ow,M.C., Perwez,T. and Kushner,S.R. (2003) RNase G of Escherichia coli exhibits only limited functional overlap with its essential homologue, RNase E. Mol. Microbiol., 49, 607-622.
    • (2003) Mol. Microbiol , vol.49 , pp. 607-622
    • Ow, M.C.1    Perwez, T.2    Kushner, S.R.3
  • 37
    • 0033532514 scopus 로고    scopus 로고
    • Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5′ end of 16S rRNA
    • Wachi,M., Umitsuki,G., Shimizu,M., Takada,A. and Nagai,K. (1999) Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5′ end of 16S rRNA. Biochem. Biophys. Res. Comm., 259, 483-488.
    • (1999) Biochem. Biophys. Res. Comm , vol.259 , pp. 483-488
    • Wachi, M.1    Umitsuki, G.2    Shimizu, M.3    Takada, A.4    Nagai, K.5
  • 38
    • 0036274640 scopus 로고    scopus 로고
    • RNase G complementation of rne null mutation identified functional interrelationships with RNase E in Escherichia coli
    • Lee,K., Bernstein,J.A. and Cohen,S.N. (2002) RNase G complementation of rne null mutation identified functional interrelationships with RNase E in Escherichia coli. Mol. Microbiol., 43, 1445-1456.
    • (2002) Mol. Microbiol , vol.43 , pp. 1445-1456
    • Lee, K.1    Bernstein, J.A.2    Cohen, S.N.3
  • 39
    • 0033577789 scopus 로고    scopus 로고
    • RNase G (CafA protein) and RNase E are both required for the 5′ maturation of 16S ribosomal RNA
    • Li,Z., Pandit,S. and Deutscher,M.P. (1999) RNase G (CafA protein) and RNase E are both required for the 5′ maturation of 16S ribosomal RNA. EMBO J., 18, 2878-2885.
    • (1999) EMBO J , vol.18 , pp. 2878-2885
    • Li, Z.1    Pandit, S.2    Deutscher, M.P.3
  • 40
    • 39149140707 scopus 로고    scopus 로고
    • Rho-independent transcription terminators inhibit RNase P processing of the secG leuU and metT tRNA polycistronic transcripts in Escherichia coli
    • Mohanty,B.K. and Kushner,S.R. (2008) Rho-independent transcription terminators inhibit RNase P processing of the secG leuU and metT tRNA polycistronic transcripts in Escherichia coli. Nucleic Acids Res., 36, 364-375.
    • (2008) Nucleic Acids Res , vol.36 , pp. 364-375
    • Mohanty, B.K.1    Kushner, S.R.2
  • 41
    • 0025782890 scopus 로고
    • Construction of versatile low-copy-number vectors for cloning, sequencing and expression in Escherichia coli
    • Wang,R.F. and Kushner,S.R. (1991) Construction of versatile low-copy-number vectors for cloning, sequencing and expression in Escherichia coli. Gene, 100, 195-199.
    • (1991) Gene , vol.100 , pp. 195-199
    • Wang, R.F.1    Kushner, S.R.2
  • 42
    • 0028828710 scopus 로고
    • New plasmids carrying antibiotic-resistance cassettes
    • Reece,K.S. and Phillips,G.J. (1995) New plasmids carrying antibiotic-resistance cassettes. Gene, 165, 141-142.
    • (1995) Gene , vol.165 , pp. 141-142
    • Reece, K.S.1    Phillips, G.J.2
  • 43
    • 0001990208 scopus 로고    scopus 로고
    • Mutagenesis by Megaprimer PCR
    • Horton,R.M. and Tait,R.C, eds, Horizon Scientific Press, Wymondham, pp
    • Barik,S. (1998) Mutagenesis by Megaprimer PCR. In Horton,R.M. and Tait,R.C. (eds), Genetic Engineering with PCR, Horizon Scientific Press, Wymondham, pp. 22-37.
    • (1998) Genetic Engineering with PCR , pp. 22-37
    • Barik, S.1
  • 45
    • 0030891309 scopus 로고    scopus 로고
    • Northern blotting of RNA denatured in glyoxal without buffer recirculation
    • Burnett,W.V. (1997) Northern blotting of RNA denatured in glyoxal without buffer recirculation. BioTechn., 22, 668-671.
    • (1997) BioTechn , vol.22 , pp. 668-671
    • Burnett, W.V.1
  • 46
    • 0027391014 scopus 로고
    • Analysis of mRNA decay and rRNA processing in Escherichia coli multiple mutants carrying a deletion in RNase III
    • Babitzke,P., Granger,L. and Kushner,S.R. (1993) Analysis of mRNA decay and rRNA processing in Escherichia coli multiple mutants carrying a deletion in RNase III. J. Bacteriol., 175, 229-239.
    • (1993) J. Bacteriol , vol.175 , pp. 229-239
    • Babitzke, P.1    Granger, L.2    Kushner, S.R.3
  • 47
    • 0036172167 scopus 로고    scopus 로고
    • Geno3D: Automatic comparative molecular modelling of protein
    • Combet,C., Jambon,M., Deleage,G. and Geourjan,C. (2002) Geno3D: Automatic comparative molecular modelling of protein. Bioinformatics 18, 213-214.
    • (2002) Bioinformatics , vol.18 , pp. 213-214
    • Combet, C.1    Jambon, M.2    Deleage, G.3    Geourjan, C.4
  • 48
    • 0242400018 scopus 로고    scopus 로고
    • Degradation of mRNA in bacteria: Emergence of ubiquitous features
    • Regnier,P. and Arraiano,C.M. (2000) Degradation of mRNA in bacteria: emergence of ubiquitous features. Bioessays, 22, 235-244.
    • (2000) Bioessays , vol.22 , pp. 235-244
    • Regnier, P.1    Arraiano, C.M.2
  • 49
    • 0025796969 scopus 로고
    • Specific endonucleolytic cleavage of the mRNA for ribosomal protein S20 of Escherichia coli requires the products of the ams gene in vivo and in vitro
    • Mackie,G.A. (1991) Specific endonucleolytic cleavage of the mRNA for ribosomal protein S20 of Escherichia coli requires the products of the ams gene in vivo and in vitro. J. Bacteriol., 173, 2488-2497.
    • (1991) J. Bacteriol , vol.173 , pp. 2488-2497
    • Mackie, G.A.1
  • 50
    • 33645826534 scopus 로고    scopus 로고
    • RNase Z in Escherichia coli plays a significant role in mRNA decay
    • Perwez,T. and Kushner,S.R. (2006) RNase Z in Escherichia coli plays a significant role in mRNA decay. Mol. Microbiol., 60, 723-737.
    • (2006) Mol. Microbiol , vol.60 , pp. 723-737
    • Perwez, T.1    Kushner, S.R.2
  • 51
    • 0009074980 scopus 로고
    • Decay of mRNA encoding ribosomal protein S15 of Escherichia coli is initiated by an RNase E-dependent endonucleolytic cleavage that removes the 3′ stabilizing stem and loop structure
    • Regnier,P. and Hajnsdorf,E. (1991) Decay of mRNA encoding ribosomal protein S15 of Escherichia coli is initiated by an RNase E-dependent endonucleolytic cleavage that removes the 3′ stabilizing stem and loop structure. J. Mol. Biol., 187, 23-32.
    • (1991) J. Mol. Biol , vol.187 , pp. 23-32
    • Regnier, P.1    Hajnsdorf, E.2
  • 52
    • 0028235826 scopus 로고
    • Roles of RNase E, RNase II and PNPase in the degradation of the rpsO transcripts of Escherichia coli: Stabilizing function of RNase II and evidence for efficient degradation in an ams pnp rnb mutant
    • Hajnsdorf,E., Steier,O., Coscoy,L., Teysset,L. and Régnier,P. (1994) Roles of RNase E, RNase II and PNPase in the degradation of the rpsO transcripts of Escherichia coli: Stabilizing function of RNase II and evidence for efficient degradation in an ams pnp rnb mutant. EMBO J., 13, 3368-3377.
    • (1994) EMBO J , vol.13 , pp. 3368-3377
    • Hajnsdorf, E.1    Steier, O.2    Coscoy, L.3    Teysset, L.4    Régnier, P.5
  • 53
    • 0017887243 scopus 로고
    • Conditional lethal mutant of Escherichia coli which affects processing of ribosomal RNA
    • Apirion,D. and Lassar,A.B. (1978) Conditional lethal mutant of Escherichia coli which affects processing of ribosomal RNA. J. Biol. Chem., 253, 1738-1742.
    • (1978) J. Biol. Chem , vol.253 , pp. 1738-1742
    • Apirion, D.1    Lassar, A.B.2
  • 54
    • 0018034154 scopus 로고
    • Structural analysis and in vitro processing to p5 rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli
    • Ghora,B.K. and Apirion,D. (1978) Structural analysis and in vitro processing to p5 rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli. Cell, 15, 1055-1066.
    • (1978) Cell , vol.15 , pp. 1055-1066
    • Ghora, B.K.1    Apirion, D.2
  • 55
    • 0026008229 scopus 로고
    • The Ams (altered mRNA stability) protein and ribonuclease E are encoded by the same structural gene of Escherichia coli
    • Babitzke,P. and Kushner,S.R. (1991) The Ams (altered mRNA stability) protein and ribonuclease E are encoded by the same structural gene of Escherichia coli. Proc. Natl Acad. Sci. USA, 88, 1-5.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 1-5
    • Babitzke, P.1    Kushner, S.R.2
  • 56
    • 38349117689 scopus 로고    scopus 로고
    • The bacterial enzyme RppH triggers messenger RNA degradation by 5′ pyrophosphate removal
    • Deana,A., Celesnik,H. and Belasco,J.G. (2008) The bacterial enzyme RppH triggers messenger RNA degradation by 5′ pyrophosphate removal. Nature, 451, 355-358.
    • (2008) Nature , vol.451 , pp. 355-358
    • Deana, A.1    Celesnik, H.2    Belasco, J.G.3
  • 57
    • 0030564828 scopus 로고    scopus 로고
    • Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates
    • Dong,H., Nilsson,L. and Kurland,C.G. (1996) Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. J. Mol. Biol., 260, 649-663.
    • (1996) J. Mol. Biol , vol.260 , pp. 649-663
    • Dong, H.1    Nilsson, L.2    Kurland, C.G.3
  • 58
    • 0031586223 scopus 로고    scopus 로고
    • Growth rate optimised tRNA abundance and codon usage
    • Berg,O.G. and Kurland,C.G. (1997) Growth rate optimised tRNA abundance and codon usage. J. Mol. Biol., 270, 544-550.
    • (1997) J. Mol. Biol , vol.270 , pp. 544-550
    • Berg, O.G.1    Kurland, C.G.2
  • 59
    • 52649162384 scopus 로고    scopus 로고
    • Single amino acid changes in the predicted RNase H domain of E. coli RNase G lead to the complementation of RNase E mutants
    • submitted
    • Chung,D.-H., Min,Z., Wang,B.-C. and Kushner,S.R. (2008) Single amino acid changes in the predicted RNase H domain of E. coli RNase G lead to the complementation of RNase E mutants. J. Mol. Biol., submitted.
    • (2008) J. Mol. Biol
    • Chung, D.-H.1    Min, Z.2    Wang, B.-C.3    Kushner, S.R.4
  • 60
    • 33748257975 scopus 로고    scopus 로고
    • Modulating the outer membrane with small RNAs
    • Gullier,M., Gottesman,S. and Storz,G. (2006) Modulating the outer membrane with small RNAs. Genes Dev., 20, 2338-2348.
    • (2006) Genes Dev , vol.20 , pp. 2338-2348
    • Gullier, M.1    Gottesman, S.2    Storz, G.3
  • 61
    • 0035395606 scopus 로고    scopus 로고
    • Identification of novel small RNAs using comparative genomics and microarrays
    • Wassarman,K.M., Repoila,F., Rosenow,C., Storz,G. and Gottesman,S. (2001) Identification of novel small RNAs using comparative genomics and microarrays. Genes Dev., 15, 1637-1651.
    • (2001) Genes Dev , vol.15 , pp. 1637-1651
    • Wassarman, K.M.1    Repoila, F.2    Rosenow, C.3    Storz, G.4    Gottesman, S.5
  • 62
    • 0026447906 scopus 로고
    • Cloning and analysis of the entire Escherichia coli ams gene. ams is identical to hmp-1 and encodes a 114kDA protein that migrates as a 180 kDa protein
    • Casarégola,S., Jacq,A., Laoudj,D., McGurk,G., Margarson,S., Tempête,M., Norris,V. and Holland,I.B. (1992) Cloning and analysis of the entire Escherichia coli ams gene. ams is identical to hmp-1 and encodes a 114kDA protein that migrates as a 180 kDa protein. J. Mol. Biol., 228, 30-40.
    • (1992) J. Mol. Biol , vol.228 , pp. 30-40
    • Casarégola, S.1    Jacq, A.2    Laoudj, D.3    McGurk, G.4    Margarson, S.5    Tempête, M.6    Norris, V.7    Holland, I.B.8
  • 63
    • 33846818898 scopus 로고    scopus 로고
    • RNase E and the other constituents of the RNA degradosome are components of the bacterial cytoskeleton
    • Taghbalout,A. and Rothfield,L. (2007) RNase E and the other constituents of the RNA degradosome are components of the bacterial cytoskeleton. Proc. Natl Acad. Sci. USA, 104, 1667-1672.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 1667-1672
    • Taghbalout, A.1    Rothfield, L.2
  • 64
    • 0032531768 scopus 로고    scopus 로고
    • Ribonuclease E is a 5′-end-dependent endonuclease
    • Mackie,G.A. (1998) Ribonuclease E is a 5′-end-dependent endonuclease. Nature, 395, 720-723.
    • (1998) Nature , vol.395 , pp. 720-723
    • Mackie, G.A.1
  • 65
    • 0034682733 scopus 로고    scopus 로고
    • Stabilization of circular rpsT mRNA demonstrates the 5′-end dependence of RNase E action in vivo
    • Mackie,G.A. (2000) Stabilization of circular rpsT mRNA demonstrates the 5′-end dependence of RNase E action in vivo. J. Biol. Chem., 275, 25069-25072.
    • (2000) J. Biol. Chem , vol.275 , pp. 25069-25072
    • Mackie, G.A.1
  • 66
    • 0043224223 scopus 로고    scopus 로고
    • RraA: A protein inhibitor of RNase E activity that globally modulates RNA abundance in E. coli
    • Lee,K., Zhan,X., Gao,J., Feng,Y., Meganathan,R., Cohen,S.N. and Georgiou,G. (2003) RraA: A protein inhibitor of RNase E activity that globally modulates RNA abundance in E. coli. Cell, 114, 623-634.
    • (2003) Cell , vol.114 , pp. 623-634
    • Lee, K.1    Zhan, X.2    Gao, J.3    Feng, Y.4    Meganathan, R.5    Cohen, S.N.6    Georgiou, G.7
  • 68
    • 52649172696 scopus 로고    scopus 로고
    • Hanahan,D., Jessee,J. and Bloom,F. (2005) Techniques for transformation of E. coli. In Glover,D.M. and Hames,B.D. (eds), DNA Cloning: A Practical Approach, 1, 2nd edn, IRL Press, Oxford, pp. 1-35.
    • Hanahan,D., Jessee,J. and Bloom,F. (2005) Techniques for transformation of E. coli. In Glover,D.M. and Hames,B.D. (eds), DNA Cloning: A Practical Approach, Vol. 1, 2nd edn, IRL Press, Oxford, pp. 1-35.
  • 69
    • 0024463462 scopus 로고
    • Cloning of the altered mRNA stability (ams) gene of Escherichia coli K-12
    • Claverie-Martin,F., Diaz-Torres,M.R., Yancey,S.D. and Kushner,S.R. (1989) Cloning of the altered mRNA stability (ams) gene of Escherichia coli K-12. J. Bacteriol., 171, 5479-5486.
    • (1989) J. Bacteriol , vol.171 , pp. 5479-5486
    • Claverie-Martin, F.1    Diaz-Torres, M.R.2    Yancey, S.D.3    Kushner, S.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.