The endoribonucleolytic N-terminal half of Escherichia coli RNase E is evolutionarily conserved in Synechocystis sp. and other bacteria but not the C-terminal half, which is sufficient for degradosome assembly

Proceedings of the National Academy of Sciences of the United States of America

Volumn 95, Issue 20, 1998, Pages 11637-11642

  Kaberdin, Vladimir R ^a   Miczak, Andras ^b,c   Jakobsen, Jimmy S ^a   Lin Chao, Sue ^c   Mcdowall, Kenneth J ^d   Von Gabain, Alexander ^a  

^a Vienna Biocenter   (Austria)

^b UNIVERSITY OF SZEGED   (Hungary)

^c INSTITUTE OF MOLECULAR BIOLOGY   (Taiwan)

^d UNIVERSITY OF LEEDS   (United Kingdom)

Author keywords

mRNA degradation; RNA degradosome

Indexed keywords

RIBONUCLEASE;

AMINO ACID ANALYSIS; AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CYANOBACTERIUM; ESCHERICHIA COLI; EVOLUTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN PROTEIN INTERACTION; RIBOSOME; RNA BINDING; RNA PROCESSING;

BASE SEQUENCE; CONSERVED SEQUENCE; CYANOBACTERIA; DNA PRIMERS; ENDORIBONUCLEASES; ESCHERICHIA COLI; EVOLUTION, MOLECULAR; MACROMOLECULAR SUBSTANCES; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, BACTERIAL; RNA, MESSENGER; RNA, RIBOSOMAL; SPECIES SPECIFICITY; SUBSTRATE SPECIFICITY;

EID: 0032578486     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.95.20.11637     Document Type: Article

References (51)

1. Cohen, S. N. & McDowall, K. J. (1997) Mol. Microbiol. 23, 1099-1106.
2. Apirion, D. & Lassar, A. B. (1978) J. Biol. Chem. 253, 1738-1742.
3. Ehretsmann, C. P., Carpousis, A. J. & Krisch, H. M. (1992) FASEB J. 6, 3186-3192.
4. Melefors, Ö., Lundberg, U. & von Gabain, A. (1993) in Control of Messenger RNA Stability, eds. Belasco, J. & Brawerman, G. (Academic, San Diego), pp. 53-70.
5. Lin-Chao, S. & Cohen, S. N. (1991) Cell 65, 1233-1242.
6. Söderbom, F., Binnie, U., Masters, M. & Wagner, G. (1997) Mol. Microbiol. 26, 493-504.
7. Mikkelsen, N. D. & Gerdes, K. (1997) Mol. Microbiol. 26, 311-320.
8. Huang, H., Liao, J. & Cohen, S. N. (1998) Nature (London) 391, 99-102.
9. Cohen, S. N. (1995) Cell 80, 829-832.
10. Carpousis, A. J., Van Houwe, G., Ehretsmann, C. & Krisch, H. M. (1994) Cell 76, 889-900.
11. Py, B., Causton, H., Mudd, E. A. & Higgins, C. F. (1994) Mol. Microbiol. 14, 717-729.
12. Miczak, A., Kaberdin, V. R., Wei, C.-L. & Lin-Chao, S. (1996) Proc. Natl. Acad. Sci. USA 93, 3865-3869.
13. Py, B., Higgins, C. F., Krisch H. M. & Carpousis A. J. (1996) Nature (London) 381, 169-172.
14. Blum, E., Py, B., Carpousis, A. J. & Higgins, C. F. (1997) Mol. Microbiol. 26, 387-398.
15. Casaregola, S., Jacq, A., Laoudj, D., McGurk, G., Margarson, S., Tempete, M., Norris, V. & Holland, I. B. (1994) J. Mol. Biol. 238, 867.
16. McDowall, K. J. & Cohen, S. N. (1996) J. Mol. Biol. 255, 349-355.
17. McDowall, K. J., Hernandez, R. G., Lin-Chao, S. & Cohen, S. N. (1993) J. Bacteriol. 175, 4245-4249.
18. Okada, Y., Wachi, M., Hirata, A., Suzuki, K., Nagai, K. & Matsuhashi, M. (1994) J. Bacteriol. 176, 917-922.
19. Wachi, M., Umitsuki, G. & Nagai, K. (1997) Mol. Gen. Genet. 253, 515-519.
20. Bycroft, M., Hubbard, T. J. P., Proctor, M., Freund, S. M. V. & Murzin, A. G. (1997) Cell 88, 235-242.
21. Claverie-Martin, F., Diaz-Torrcs, M., Yancey, S. D. & Kushner, S. R. (1991) J. Biol. Chem. 266, 2843-2851.
22. Casaregola, S., Jacq, A., Laoudj, D., McGurk, G., Margarson, S., Tempete, M., Norris, V. & Holland, I. B. (1992) J. Mol. Biol. 228, 30-40.
23. Kaberdin, V. R., Chao, Y.-H. & Lin-Chao, S. (1996) J. Biol. Chem. 271, 13103-13109.
24. Kido, M., Yamanaka, K., Mitani, T., Niki, H., Ogura, T. & Hiraga, S. (1996) J. Bacteriol. 178, 3917-3925.
25. Fleischmann, R. D., Adams, M. D., White, O., Clayton, R. A., Kirkness, E. F., Kerlavage, A. R., Bull, C. J., Tomb, J.-F., Dougherty, B. A., Merrick, J. M., et al. (1995) Science 269, 496-512.
26. Kaneko, T., Sato, S., Kotani, H., Tanaka, A., Asamizu, E., Nakamura, Y., Miyajima, N., Hirosava, M., Sugiura, M., Sasamoto, S., et al. (1996) DNA Res. 3, 109-136.
27. Reith, M. & Munholland, J. (1995) Plant Mol. Biol. Rep. 13, 333-335.
28. Kunst, F., Ogasawara, N., Moszer, I., Albertini, A. M., Alloni, G., Azevedo, V., Bertero, M. G., Bessieres, P., Bolotin, A., Borchert, S., et al. (1997) Nature (London) 390, 249-256.
29. Condon, C., Putzer, H., Luo, D. & Grunberg-Manago, M. (1997) J. Mol. Biol. 268, 235-242.
30. Fritsch, J., Rothfuchs, R., Rauhut, R. & Klug, G. (1995) Mol. Microbiol. 15, 1017-1029.
31. Hagege, J. M. & Cohen, S. N. (1997) Mol. Microbiol. 25, 1077-1090.
32. Franzetti, B., Sohlberg, B., Zaccai, G. & von Gabain, A. (1997) J. Bacteriol. 179, 1180-1185.
33. Wennborg, A., Sohlberg, B., Angerer, D., Klein, G. & von Gabain, A. (1995) Proc. Natl. Acad. Sci. USA 92, 7322-7326.
34. Wang, M. & Cohen, S. N. (1994) Proc. Natl. Acad. Sci. USA 91, 10591-10595.
35. Claverie-Martin, F., Wang, M. & Cohen, S. N. (1997) J. Biol. Chem. 272, 13823-13828.
36. Sohlberg, B., Lundberg, U., Hartl, F.-U. & von Gabain, A. (1993) Proc. Natl. Acad. Sci. USA 90, 277-281.
37. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Lab. Press, Plainview, NY).
38. Laemmli, U. K. (1970) Nature (London) 227, 680-685.
39. Cormack, R. S., Genereaux, J. L. & Mackie, G. A. (1993) Proc. Natl. Acad. Sci. USA 90, 9006-9010.
40. Chiang, C. M. & Roeder, R. G. (1993) Peptide Res. 6, 62-64.
41. Quail, P. H. (1997) BioEssays 19, 571-579.
42. Dickerson, R. E. (1980) Sci. Am. 242, 136-153.
43. Darr, S. C., Brown, J. W. & Pace, N. R. (1992) Trends Biochem. Sci. 17, 178-182.
44. Fraser, C. M., Gocayne, J. D., White, O., Adams, M. D., Clayton, R. A., Fleischmann, R. D., Bult, C. J., Kerlavage, A. R., Sutton, G., Kelley, J. M., et al. (1995) Science 270, 397-403.
45. Himmelreich, R., Hubert, H., Plagens, H., Pirkl, E., Li, B. C. & Herrmann, R. (1996) Nucleic Acids Res. 24, 4420-4449.
46. Tomb, J. F., White, O., Kerlavage, A. R., Clayton, R. A., Sutton, G. G., Fleischmann, R. D., Ketchum, K. A., Klenk, H. P., Gill, S., Dougherty, B. A., et al. (1997) Nature (London) 388, 539-547.
47. Fraser, C. M., Casjens, S., Huang, W.-M., Sutton, G. G., Clayton, R., Lathigra, R., White, O., Ketchum, K. A., Dodson, R., Hickey, E., et al. (1997) Nature (London) 390, 580-586.
48. Doolittle, R. F. (1997) Nature (London) 392, 339-342.
49. Taraseviciene, L., Björk, G. & Uhlin, B. E. (1995) J. Biol. Chem. 270, 26391-26398.
50. Cole, S. T., Brosch, R., Parkhill, J., Garnier, J., Churcher, C., Harris, D., Gordon, S. V., Eiglmeier, K., Gas, S., Barry III, C. E. et al. (1998) Nature (London) 393, 537-544.
51. Vanzo, N. F., Li, Y. S., Py, B., Blum, E., Higgins, C. F., Raynal, L. C., Krisch, H. M. & Carpousis, A. J. (1998) Genes Dev., in press.