Multiple RRMs contribute to RNA binding specificity and affinity for polypyrimidine tract binding protein

Biochemistry

Volumn 36, Issue 39, 1997, Pages 11881-11890

  Pérez, Ismael ^a   McAfee, James G ^a   Patton, James G ^a  

^a VANDERBILT UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEIN; PYRIMIDINE; RIBONUCLEOPROTEIN;

ARTICLE; BINDING AFFINITY; CONTROLLED STUDY; HELA CELL; HUMAN; HUMAN CELL; OLIGOMERIZATION; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; RNA BINDING; RNA SEQUENCE;

ANIMALS; BINDING SITES; CERCOPITHECUS AETHIOPS; DIMERIZATION; POLYPYRIMIDINE TRACT-BINDING PROTEIN; PROTEIN CONFORMATION; RIBONUCLEOPROTEINS; RNA; RNA-BINDING PROTEINS; SEQUENCE ANALYSIS, RNA; VERO CELLS;

EID: 0041372953     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9711745     Document Type: Article

References (66)

1. Allain, F. H.-T., Gubser, C. C., Howe, P. W. A., Nagai, K., Neuhaus, D., & Varani, G. (1996) Nature 380, 646-650.
2. Bandziulis, R. J., Swanson, M. S., & Dreyfuss, G. (1989) Genes Dev. 3, 431-437.
3. Birney, E., Kumar, S., & Krainer, A. R. (1993) Nucleic Acids Res. 21, 5803-5816.
4. Bujalowski, W., & Lohman, T. M. (1986) Biochemistry 25, 7799-7802.
5. Burd, C. G., & Dreyfuss, G. (1994) Science 265, 615-621.
6. Burd, C. G., Matunis, E. L., & Dreyfuss, G. (1991) Mol. Cell. Biol. 11, 3419-3424.
7. Casas-Finet, J. R., Smith, J. D., Kumar, A., Kim, J. G., Wilson, S. H., & Karpel, R. L. (1993) J. Mol. Biol. 229, 873-889.
8. Compton, L. A., & Johnson, W. C. (1986) Anal. Biochem. 155, 155-167.
9. Coolidge, C. J., & Patton, J. G. (1995) Biotechniques 18, 763-764.
10. Dingwall, C., & Laskey, R. A. (1991) Trends Biochem. Sci. 16, 478-481.
11. Dreyfuss, G., Matunis, M. J., Piñol-Roma, S., & Burd, C. G. (1993) Annu. Rev. Biochem. 62, 289-322.
12. Fu, X.-D. (1995) RNA 1, 663-680.
13. Garcia-Blanco, M. A., Jamison, S. F., & Sharp, P. A. (1989) Genes Dev. 3, 1874-1886.
14. Garrett, D. S., Lodi, P. J., Shamoo, Y., Williams, K. R., Clore, G. M., & Gronenborn, A. M. (1994) Biochemistry 33, 2852-2858.
15. Ghetti, A., Piñol-Roma, S., Michael, W. M., Morandi, C., & Dreyfuss, G. (1992) Nucleic Acids Res. 20, 3671-3678.
16. Ghisolfi, L., Kharratt, A., Joseph, G., Amalric, F., & Erard, M. (1992) Eur. J. Biochem. 209, 541-548.
17. Gil, A., Sharp, P. A., Jamison, S. F., & Garcia-Blanco, M. A. (1991) Genes Dev. 5, 1224-1236.
18. Girard, J.-P., Lehtonen, H., Caizergues-Ferrer, M., Amalric, F., Tollervey, D., & Lapeyre, B. (1992) EMBO J. 11, 673-682.
19. Görlich, D., & Mattaj, I. W. (1996) Science 271, 1513-1518.
20. Griffith, J. D., Harris, L. D., & Register, J. (1984) Cold Spring Harbor Symp. Quant. Biol. 49, 553-559.
21. Hoffman, D. W., Query, C. C., Golden, B. L., White, S. W., & Keene, J. D. (1991) Proc. Natl. Acad. Sci. 88, 2495-2499.
22. Huang, S., Deerinck, T. J., Ellisman, M. H., & Spector, D. L. (1997) J. Cell Biol. 137, 956-974.
23. Imai, Y., Matshushima, Y., Sugimura, T., & M., T. (1991) Nucleic Acids Res. 19, 2785.
24. Jackson, R. J., & Kaminski, A. (1995) RNA 1, 985-1000.
25. Jansen-Durr, P., Boshart, M., Lupp, B., Bosserhoff, A., Frank, R. W., & Schutz, G. (1992) Nucleic Acids Res. 20, 1243-1249.
26. Kaminski, A., Hunt, S. L., Patton, J. G., & Jackson, R. J. (1995) RNA 1, 924-938.
27. Kanaar, R., A. L., L., Rudner, D. Z., Wemmer, D. E., & Rio, D. C. (1995) EMBO J. 14, 4530-4539.
28. Kenan, D. J., Query, C. C., & Keene, J. D. (1991) Trends Biochem. Sci. 16, 214-220.
29. Kharrat, A., Macias, M. J., Gibson, T. J., Nilges, M., & Pastore, A. (1995) EMBO J. 14, 3572-3584.
30. Kiledjian, M., & Dreyfuss, G. (1992) EMBO J. 11, 2655-2664.
31. LaCasse, E. C., & Lefebvre, Y. A. (1995) Nucleic Acids Res. 23, 1647-1656.
32. Lee, W.-C., Xue, Z., & Melese, T. (1991) J. Cell Biol. 113, 1-12.
33. Lee, A. L., Kanaar, R., Rio, D. C., & Wemmer, D. E. (1994) Biochemists 33, 13775-13786.
34. Lin, C.-H., & Patton, J. G. (1995) RNA 1, 234-245.
35. Lohman, T. M., & Bujalowski, W. (1990) in The Biology of Nonspecific DNA-Protein Interactions (Revzin, A., Ed.) CRC Press, Boca Raton, FL.
36. Lohman, T. M., Bujalowski, W., & Overman, L. B. (1988) Trends Biochem. Sci. 13, 250-255.
37. Lohman, T. M., & Overman, L. B. (1985) J. Biol. Chem. 260, 3594-3603.
38. Lu, J., & Hall, K. B. (1995) J. Mol. Biol. 247, 739-752.
39. Lutz-Freyermuth, C., Query, C. C., & Keene, J. D. (1990) Proc. Natl. Acad. Sci. 87, 6393-6397.
40. Manavalan, P., & Johnson, W. C. (1987) Anal. Biochem. 167, 76-85.
41. Manley, J. L., & Tacke, R. (1996) Genes Dev. 10, 1569-1579.
42. Matera, A. G., Frey, M. R., Margelot, K., & Wolin, S. L. (1995) J. Cell Biol. 129, 1181-1193.
43. Mayeda, A., Munroe, S. H., Caceres, J. F., & Krainer, A. R. (1994) EMBO J. 13, 5483-5495.
44. McAfee, J. G., Soltaninassab, S. E., Lindsay, M. E., & LeStourgeon, W. M. (1995) Biochemistry 35, 1212-1222.
45. McAfee, J. G., Milam, L. S., Soltaninassab, S. R., & LeStourgeon, W. M. (1996) RNA 2, 1139-1152.
46. Mullen, M. P., Smith, C. W. J., Patton, J. G., & Nadal-Ginard, B. (1991) Genes Dev. 5, 642-655.
47. Munroe, S. H., & Dong, X. (1992) Proc. Natl. Acad. Sci. 89, 895-899.
48. Musco, G., Stier, G., Joseph, C., Morelli, M. A. C., Nilges, M., Gibson, T. J., & Pastore, A. (1996) Cell 85, 237-245.
49. Nagai, K., Oubridge, C., Jessen, T., Li, J., & Evans, P. R. (1990) Nature 348, 515-520.
50. Nagai, K., Oubridge, C., Ito, N., Avis, J., & Evans, P. (1995) Trends Biochem. Sci. 20, 233-241.
51. Nietfeld, W., Mentzel, H., & Pieler, T. (1990) EMBO J. 9, 3699-3705.
52. Oubridge, C., Ito, N., Evans, P. R., Teo, C.-H., & Nagai, K. (1994) Nature 372, 432-438.
53. Patton, J. G., Mayer, S. A., Tempst, P., & Nadal-Ginard, B. (1991) Genes Dev. 5, 1237-1251.
54. Patton, J. G., Porro, E. B., Galceran, J., Tempst, P., & Nadal-Ginard, B. (1993) Genes Dev. 7, 393-406.
55. Pérez, I., Lin, C.-H., McAfee, J. G., & Patton, J. G. (1997) RNA 3, 764-778.
56. Piñol-Roma, S., Swanson, M. S., Gall, J. G., & Dreyfuss, G. (1989) J. Cell Biol. 109, 2575-2587.
57. Romac, J. M.-J., Graff, D. H., & Keene, J. D. (1994) Mol. Cell. Biol. 14, 4662-4670.
58. Sachs, A. B., Davis, R. W., & Kornberg, R. D. (1987) Mol. Cell. Biol. 7, 3268-3276.
59. Scherly, D., Boelens, W., Nathan, N. A., van Venrooij, W. J., & Mattaj, I. W. (1990a) Nature 345, 502-506.
60. Scherly, D., Dathan, N. A., Boelens, W., van Venrooij, W. J., & Mattaj, I. W. (1990b) EMBO J. 9, 3675-3681.
61. Shamoo, Y., Abdul-Manan, N., & Williams, K. R. (1995) Nucleic Acids Res. 23, 725-728.
62. Singh, R., Valcárcel, J., & Green, M. R. (1995) Science 268, 1173-1176.
63. Wang, J., & Bell, L. R. (1994) Genes Dev. 8, 2072-2085.
64. Williams, K. R., Murphy, J. B., & Chase, J. W. (1984) J. Biol. Chem. 259, 11804-11811.
65. Wittekind, M., Görlach, M., Friedrichs, M., Dreyfuss, G., & Mueller, L. (1992) Biochemistry 31, 6254-6265.
66. Zamore, P. D., Patton, J. G., & Green, M. R. (1992) Nature 355, 609-614.