메뉴 건너뛰기




Volumn 6, Issue 9, 1999, Pages 657-669

RNA architecture dictates the conformations of a bound peptide

Author keywords

Adaptive binding; Bound peptide secondary structures; HIV 1 Rev peptide; Peptide binding RNA tertiary architectures; RNA aptamers

Indexed keywords


EID: 0033200399     PISSN: 10745521     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1074-5521(99)80117-3     Document Type: Article
Times cited : (69)

References (41)
  • 1
    • 0025767166 scopus 로고
    • The HIV-1 Rev protein: Prototype of a novel class of eukaryotic post-transcriptional regulators
    • Cullen, B.R. & Malim, M.H. (1991). The HIV-1 Rev protein: Prototype of a novel class of eukaryotic post-transcriptional regulators. Trends Biochem. Sci. 16, 346-350.
    • (1991) Trends Biochem. Sci. , vol.16 , pp. 346-350
    • Cullen, B.R.1    Malim, M.H.2
  • 2
    • 0027196104 scopus 로고
    • RNA recognition by the human immunodeficiency virus Tat and Rev proteins
    • Gait, M.J. & Karn, J. (1993). RNA recognition by the human immunodeficiency virus Tat and Rev proteins. Trends Biochem. Sci. 18, 255-259.
    • (1993) Trends Biochem. Sci. , vol.18 , pp. 255-259
    • Gait, M.J.1    Karn, J.2
  • 3
    • 0025917131 scopus 로고
    • Oligomerization and RNA binding domains of the type 1 human immunodeficiency virus Rev protein: A dual function for an arginine-rich binding motif
    • Zapp, M.L., Hope, T.J., Parslow, T.G. & Green, M.R. (1991). Oligomerization and RNA binding domains of the type 1 human immunodeficiency virus Rev protein: A dual function for an arginine-rich binding motif. Proc. Natl Acad. Sci. USA 88, 7734-7738.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 7734-7738
    • Zapp, M.L.1    Hope, T.J.2    Parslow, T.G.3    Green, M.R.4
  • 4
    • 0025882673 scopus 로고
    • Human immunodeficiency virus type 1 regulator of virion expression, rev, forms nucleoprotein filaments after binding to a purine-rich 'bubble' located within the rev-response region of viral mRNAs
    • Heapy, S., Finch, J.T., Gait, M.J., Karn, J. & Singh, M. (1991). Human immunodeficiency virus type 1 regulator of virion expression, rev, forms nucleoprotein filaments after binding to a purine-rich 'bubble' located within the rev-response region of viral mRNAs. Proc. Natl Acad. Sci. USA 88, 7366-7370.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 7366-7370
    • Heapy, S.1    Finch, J.T.2    Gait, M.J.3    Karn, J.4    Singh, M.5
  • 5
    • 0026601935 scopus 로고
    • Identification of a high-affinity RNA-binding site for the human immunodeficiency virus type I Rev protein
    • Tiley, L.S., Malim, M.H., Tewary, H.K., Stockley, P.G. & Cullen, B.R. (1992). Identification of a high-affinity RNA-binding site for the human immunodeficiency virus type I rev protein. Proc. Natl Acad. Sci. USA 89, 758-762.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 758-762
    • Tiley, L.S.1    Malim, M.H.2    Tewary, H.K.3    Stockley, P.G.4    Cullen, B.R.5
  • 6
    • 0001052878 scopus 로고
    • Using peptides to study RNA-protein recognition
    • (Nagai, K. & Mattaj, I.W., eds), IRL Press, New York
    • Frankel, A.D. (1994). Using peptides to study rna-protein recognition. In RNA-Protein Interactions. (Nagai, K. & Mattaj, I.W., eds), pp. 221-247, IRL Press, New York.
    • (1994) RNA-Protein Interactions , pp. 221-247
    • Frankel, A.D.1
  • 7
    • 0002627304 scopus 로고
    • Control of HIV gene expression by RNA-binding proteins Tat and Rev
    • (Nagai, K. & Mattaj, I.W., eds), IRL Press, New York
    • Karn, J., Gait, M.J., Churcher, M.J., Mann, D.A., Mikaelian, I. & Pritchard, C. (1994). Control of HIV gene expression by RNA-binding proteins Tat and Rev. In RNA-Protein Interactions. (Nagai, K. & Mattaj, I.W., eds), pp. 193-220, IRL Press, New York.
    • (1994) RNA-Protein Interactions , pp. 193-220
    • Karn, J.1    Gait, M.J.2    Churcher, M.J.3    Mann, D.A.4    Mikaelian, I.5    Pritchard, C.6
  • 8
    • 0026540537 scopus 로고
    • Specific binding of a basic peptide from HIV-1 Rev
    • Kjems, J, Calnan, BJ, Frankel, AD & Sharp, PA (1992). Specific binding of a basic peptide from HIV-1 Rev. EMBO J. 11, 1119-1129.
    • (1992) EMBO J. , vol.11 , pp. 1119-1129
    • Kjems, J.1    Calnan, B.J.2    Frankel, A.D.3    Sharp, P.A.4
  • 9
    • 0029784592 scopus 로고    scopus 로고
    • α Helix-RNA major groove recognition in an HIV-1 Rev peptide-RRE RNA complex
    • Battiste, J.L., et al., & Williamson, J.R. (1996). α Helix-RNA major groove recognition in an HIV-1 Rev peptide-RRE RNA complex. Science 273, 1547-1551.
    • (1996) Science 273 , pp. 1547-1551
    • Battiste, J.L.1    Williamson, J.R.2
  • 10
    • 0030475417 scopus 로고    scopus 로고
    • Deep penetration of an α helix into a widened RNA major groove in the HIV-1 Rev peptide-RNA aptamer complex
    • Ye, X., Gorin, A., Ellington, A. & Patel, D.J. (1996). Deep penetration of an α helix into a widened RNA major groove in the HIV-1 Rev peptide-RNA aptamer complex. Nat. Struct. Biol. 3, 1026-1033.
    • (1996) Nat. Struct. Biol. , vol.3 , pp. 1026-1033
    • Ye, X.1    Gorin, A.2    Ellington, A.3    Patel, D.J.4
  • 13
    • 0029847929 scopus 로고    scopus 로고
    • Anti-peptide aptamers recognize amino acid sequence and bind a peptide epitope
    • Xu, W. & Ellington, A.D. (1996). Anti-peptide aptamers recognize amino acid sequence and bind a peptide epitope. Proc. Natl Acad. Sci. USA 93, 7475-7480.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 7475-7480
    • Xu, W.1    Ellington, A.D.2
  • 14
    • 0024434420 scopus 로고
    • Sequence-specific recognition of RNA hairpins by bacteriophage antiterminators requires a conserved arginine rich motif
    • Lazinski, D., Grzadzielska, E. & Das, A. (1989). Sequence-specific recognition of RNA hairpins by bacteriophage antiterminators requires a conserved arginine rich motif. Cell 59, 207-218.
    • (1989) Cell , vol.59 , pp. 207-218
    • Lazinski, D.1    Grzadzielska, E.2    Das, A.3
  • 15
    • 0028885514 scopus 로고
    • Multidimensional heteronuclear NMR experiments for structure determination of isotopically labeled RNA
    • Pardi, A. (1995). Multidimensional heteronuclear NMR experiments for structure determination of isotopically labeled RNA. Methods Enzymol. 261, 350-380.
    • (1995) Methods Enzymol. , vol.261 , pp. 350-380
    • Pardi, A.1
  • 16
    • 0029847611 scopus 로고    scopus 로고
    • RNA folding topology and intermolecular contacts in the AMP-RNA aptamer complex
    • Jiang, F., Fiala, R., Live, D., Kumar, R.A. & Patel, D.J. (1996). RNA folding topology and intermolecular contacts in the AMP-RNA aptamer complex. Biochemistry 35, 13250-13266.
    • (1996) Biochemistry , vol.35 , pp. 13250-13266
    • Jiang, F.1    Fiala, R.2    Live, D.3    Kumar, R.A.4    Patel, D.J.5
  • 17
    • 0031916834 scopus 로고    scopus 로고
    • Solution structure of P22 transcriptional antitermination N-peptide-boxB RNA complex
    • Cai, Z., et al., & Patel, D.J. (1998). Solution structure of P22 transcriptional antitermination N-peptide-boxB RNA complex. Nat. Struct. Biol. 5, 203-212.
    • (1998) Nat. Struct. Biol. , vol.5 , pp. 203-212
    • Cai, Z.1    Patel, D.J.2
  • 18
    • 0029613238 scopus 로고
    • Molecular recognition in the bovine immunodeficiency virus Tat-peptide-TAR RNA complex
    • Ye, X., Kumar, R.A. & Patel, D.J. (1995). Molecular recognition in the bovine immunodeficiency virus Tat-peptide-TAR RNA complex. Chem. Biol. 2, 827-840.
    • (1995) Chem. Biol. , vol.2 , pp. 827-840
    • Ye, X.1    Kumar, R.A.2    Patel, D.J.3
  • 19
    • 0026651395 scopus 로고
    • Conformation of the Tar-RNA-arginine complex by NMR spectroscopy
    • Puglisi, J.D., Tan, R., Calnan, B.J., Frankel, A.D. & Williamson, J.R. (1992). Conformation of the Tar-RNA-arginine complex by NMR spectroscopy. Science 257, 76-80.
    • (1992) Science , vol.257 , pp. 76-80
    • Puglisi, J.D.1    Tan, R.2    Calnan, B.J.3    Frankel, A.D.4    Williamson, J.R.5
  • 21
    • 0031552350 scopus 로고    scopus 로고
    • Solution structure of the HIV-2 Tar-argininamide complex
    • Brodsky, A.S. & Williamson, J.R. (1997). Solution structure of the HIV-2 Tar-argininamide complex. J. Mol. Biol. 267, 624-639.
    • (1997) J. Mol. Biol. , vol.267 , pp. 624-639
    • Brodsky, A.S.1    Williamson, J.R.2
  • 22
    • 0026053768 scopus 로고
    • NMR and molecular evidence for a G·A mismatch base pair in a purine-rich DNA duplex
    • Li, Y., Zon, G. & Wilson, W.D. (1991). NMR and molecular evidence for a G·A mismatch base pair in a purine-rich DNA duplex. Proc. Natl Acad. Sci. USA 88, 26-30.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 26-30
    • Li, Y.1    Zon, G.2    Wilson, W.D.3
  • 23
    • 0030596092 scopus 로고    scopus 로고
    • A network of heterogeneous hydrogen bonds in GNRA tetraloops
    • Jucker, F.M., Heus, H.A., Yip, P.F., Moors, E.H. & Pardi, A. (1996). A network of heterogeneous hydrogen bonds in GNRA tetraloops. J. Mol. Biol. 264, 968-980.
    • (1996) J. Mol. Biol. , vol.264 , pp. 968-980
    • Jucker, F.M.1    Heus, H.A.2    Yip, P.F.3    Moors, E.H.4    Pardi, A.5
  • 24
    • 0030931149 scopus 로고    scopus 로고
    • An RNA enhancer in a phage transcriptional antitermination complex functions as a structural switch
    • Su, L., et al., & Weiss, M.A. (1997). An RNA enhancer in a phage transcriptional antitermination complex functions as a structural switch. Genes. Dev. 11, 2214-2226.
    • (1997) Genes. Dev. , vol.11 , pp. 2214-2226
    • Su, L.1    Weiss, M.A.2
  • 25
    • 0030713372 scopus 로고    scopus 로고
    • RNA recognition by a bent α-helix regulates transcriptional antitermination in phage λ
    • Su, L., Radek, J.T., Hallenga, K, Hermanto, P, Labeots, LA & Weiss, M.A. (1997). RNA recognition by a bent α-helix regulates transcriptional antitermination in phage λ. Biochemistry 36, 12722-12732.
    • (1997) Biochemistry , vol.36 , pp. 12722-12732
    • Su, L.1    Radek, J.T.2    Hallenga, K.3    Hermanto, P.4    Labeots, L.A.5    Weiss, M.A.6
  • 26
    • 0032540286 scopus 로고    scopus 로고
    • NMR structure of the bacteriophage λ N peptide/boxB RNA complex: Recognition of a GNRA fold by an arginine-rich motif
    • Legault, P., Li, J., Mogridge, J., Kay, L.E. & Greenblatt, J. (1998). NMR structure of the bacteriophage λ N peptide/boxB RNA complex: Recognition of a GNRA fold by an arginine-rich motif. Cell 93, 289-299.
    • (1998) Cell , vol.93 , pp. 289-299
    • Legault, P.1    Li, J.2    Mogridge, J.3    Kay, L.E.4    Greenblatt, J.5
  • 27
    • 0032864043 scopus 로고    scopus 로고
    • Adaptive recognition in RNA complexes with peptide and protein modules
    • Patel, D.J. (1999). Adaptive recognition in RNA complexes with peptide and protein modules. Curr. Opin. Struct. Biol. 9, 74-87.
    • (1999) Curr. Opin. Struct. Biol. , vol.9 , pp. 74-87
    • Patel, D.J.1
  • 28
    • 0030272096 scopus 로고    scopus 로고
    • A structural model for the HIV-1 Rev-RRE complex deduced from altered-specificity rev variants isolated from a rapid genetic strategy
    • Jain, C. & Belasco, J.G. (1996). A structural model for the HIV-1 Rev-RRE complex deduced from altered-specificity rev variants isolated from a rapid genetic strategy. Cell 87, 115-125.
    • (1996) Cell , vol.87 , pp. 115-125
    • Jain, C.1    Belasco, J.G.2
  • 29
    • 0031213649 scopus 로고    scopus 로고
    • The three dimensional structures of two complexes between recombinant MS2 capsids and RNA operator fragments reveal sequence-specific protein-RNA interactions
    • Valegard, K., et al., & Liljas, L. (1997). The three dimensional structures of two complexes between recombinant MS2 capsids and RNA operator fragments reveal sequence-specific protein-RNA interactions. J. Mol. Biol. 270, 724-738.
    • (1997) J. Mol. Biol. , vol.270 , pp. 724-738
    • Valegard, K.1    Liljas, L.2
  • 30
    • 0031951789 scopus 로고    scopus 로고
    • Crystal structure of an RNA aptamer-protein complex at 2.8 Å resolution
    • Convery, M.A., et al., & Stockley, P.G. (1998). Crystal structure of an RNA aptamer-protein complex at 2.8 Å resolution. Nat. Struct. Biol. 5, 133-139.
    • (1998) Nat. Struct. Biol. , vol.5 , pp. 133-139
    • Convery, M.A.1    Stockley, P.G.2
  • 31
    • 0031788059 scopus 로고    scopus 로고
    • Crystal structures of a series of RNA aptamers complexed to the same protein target
    • Rowsell, S. & Stockley, P.G. (1998). Crystal structures of a series of RNA aptamers complexed to the same protein target. Nat. Struct. Biol. 5, 970-975.
    • (1998) Nat. Struct. Biol. , vol.5 , pp. 970-975
    • Rowsell, S.1    Stockley, P.G.2
  • 32
    • 0024392753 scopus 로고
    • Structure of E. coli glutaminyl tRNA synthetase complexed with tRNA(Gln) and ATP at 2.8 Å resolution
    • Rould, M.A., Perona, J.J., Soil, D. & Steitz, T.A. (1989). Structure of E. coli glutaminyl tRNA synthetase complexed with tRNA(Gln) and ATP at 2.8 Å resolution. Science 246, 1135-1142.
    • (1989) Science , vol.246 , pp. 1135-1142
    • Rould, M.A.1    Perona, J.J.2    Soil, D.3    Steitz, T.A.4
  • 33
    • 2242469712 scopus 로고    scopus 로고
    • Structure of the HIV-1 nucleocapsid protein bound to the SL3 ψ-RNA recognition element
    • deGuzman, R.N., Wu, Z.R., Stalling, C.C., Pappalardo, L., Borer, P.N. & Summers, M.F. (1998). Structure of the HIV-1 nucleocapsid protein bound to the SL3 ψ-RNA recognition element. Science 279, 384-388.
    • (1998) Science , vol.279 , pp. 384-388
    • DeGuzman, R.N.1    Wu, Z.R.2    Stalling, C.C.3    Pappalardo, L.4    Borer, P.N.5    Summers, M.F.6
  • 35
    • 0028858599 scopus 로고
    • Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex
    • Puglisi, J.D., Chen, L., Blanchard, S. & Frankel A.D. (1995). Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex. Science 270, 1200-1203.
    • (1995) Science , vol.270 , pp. 1200-1203
    • Puglisi, J.D.1    Chen, L.2    Blanchard, S.3    Frankel, A.D.4
  • 36
    • 0031568305 scopus 로고    scopus 로고
    • Role REVersal: Understanding how RRE RNA binds its peptide ligand
    • Grate, D. & Wilson, C. (1997). Role REVersal: Understanding how RRE RNA binds its peptide ligand. Structure 5, 7-11.
    • (1997) Structure , vol.5 , pp. 7-11
    • Grate, D.1    Wilson, C.2
  • 37
    • 0032559232 scopus 로고    scopus 로고
    • Induced folding in peptide-RNA recognition: More than a simple handshake
    • Frankel, A.D. & Smith C.A. (1998). Induced folding in peptide-RNA recognition: More than a simple handshake. Cell 92, 149-151.
    • (1998) Cell , vol.92 , pp. 149-151
    • Frankel, A.D.1    Smith, C.A.2
  • 38
    • 0029400480 scopus 로고
    • NMRPipe: A multidimensional spectral processing system based on UNIX pipes
    • Delaglio, F., Grzesiek, S., Vuister, G., Zu, G., Pfieiffer, J. & Bax, A. (1995). NMRPipe: A multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6, 277-293.
    • (1995) J. Biomol. NMR , vol.6 , pp. 277-293
    • Delaglio, F.1    Grzesiek, S.2    Vuister, G.3    Zu, G.4    Pfieiffer, J.5    Bax, A.6
  • 39
    • 0000041361 scopus 로고
    • A common sense approach to peak picking in two, three and four dimensional spectra using automatic computer analysis of contour programs
    • Garrett, D.S., Powers, R., Gronenborn, A.M. & Clore, G.M. (1991). A common sense approach to peak picking in two, three and four dimensional spectra using automatic computer analysis of contour programs. J. Magn. Reson. 95, 214-220.
    • (1991) J. Magn. Reson. , vol.95 , pp. 214-220
    • Garrett, D.S.1    Powers, R.2    Gronenborn, A.M.3    Clore, G.M.4
  • 41
    • 0024058085 scopus 로고
    • The definition of generalized helicoidal parameters and axis of curvature for irregular nucleic acids
    • Lavery, R & Sklenar, H (1988). The definition of generalized helicoidal parameters and axis of curvature for irregular nucleic acids. J. Biomol. Struct. Dyn. 6, 63-91.
    • (1988) J. Biomol. Struct. Dyn. , vol.6 , pp. 63-91
    • Lavery, R.1    Sklenar, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.