-
1
-
-
0037130670
-
Designed arginine-rich RNA-binding peptides with picomolar affinity
-
Austin, R.J., Xia, T., Ren, J., Takahashi, T.T., and Roberts, R.W. 2002. Designed arginine-rich RNA-binding peptides with picomolar affinity. J. Am. Chem. Soc. 124: 10966-10967.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 10966-10967
-
-
Austin, R.J.1
Xia, T.2
Ren, J.3
Takahashi, T.T.4
Roberts, R.W.5
-
2
-
-
0035940452
-
Large libraries reveal diverse solutions to an RNA recognition problem
-
Barrick, J.E., Takahashi, T.T., Ren, J., Xia, T., and Roberts, R.W. 2001. Large libraries reveal diverse solutions to an RNA recognition problem. Proc. Natl. Acad. Sci. 98: 12374-12378.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 12374-12378
-
-
Barrick, J.E.1
Takahashi, T.T.2
Ren, J.3
Xia, T.4
Roberts, R.W.5
-
3
-
-
0028783749
-
High-resolution mapping of the human T-cell leukemia virus type 1 Rex-binding element by in vitro selection
-
Baskerville, S., Zapp, M., and Ellington, A.D. 1995. High-resolution mapping of the human T-cell leukemia virus type 1 Rex-binding element by in vitro selection. J. Virol. 69: 7559-7569.
-
(1995)
J. Virol.
, vol.69
, pp. 7559-7569
-
-
Baskerville, S.1
Zapp, M.2
Ellington, A.D.3
-
4
-
-
0029784592
-
Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex
-
Battiste, J.L., Mao, H., Rao, N.S., Tan, R., Muhandiram, D.R., Kay, L.E., Frankel, A.D., and Williamson, J.R. 1996. Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex. Science 273: 1547-1551.
-
(1996)
Science
, vol.273
, pp. 1547-1551
-
-
Battiste, J.L.1
Mao, H.2
Rao, N.S.3
Tan, R.4
Muhandiram, D.R.5
Kay, L.E.6
Frankel, A.D.7
Williamson, J.R.8
-
5
-
-
0003546549
-
-
Wiley, New York
-
Berova, N., Nakanishi, K., and Woody, R. 2000. Circular dichroism: Principles and applications. Wiley, New York.
-
(2000)
Circular Dichroism: Principles and Applications
-
-
Berova, N.1
Nakanishi, K.2
Woody, R.3
-
6
-
-
0034852021
-
Automated selection of antiprotein aptamers
-
Cox, J.C. and Ellington, A.D. 2001. Automated selection of antiprotein aptamers. Bioorg. Med. Chem. 9: 2525-2531.
-
(2001)
Bioorg. Med. Chem.
, vol.9
, pp. 2525-2531
-
-
Cox, J.C.1
Ellington, A.D.2
-
7
-
-
0032210799
-
Automated RNA selection
-
Cox, J.C., Rudolph, P., and Ellington, A.D. 1998. Automated RNA selection. Biotechnol. Prog. 14: 845-850.
-
(1998)
Biotechnol. Prog.
, vol.14
, pp. 845-850
-
-
Cox, J.C.1
Rudolph, P.2
Ellington, A.D.3
-
8
-
-
0037107776
-
Automated selection of aptamers against protein targets translated in vitro: From gene to aptamer
-
Cox, J.C., Hayhurst, A., Hesselberth, J., Bayer, T.S., Georgiou, G., and Ellington, A.D. 2002a. Automated selection of aptamers against protein targets translated in vitro: From gene to aptamer. Nucleic Acids Res. 30: e108.
-
(2002)
Nucleic Acids Res.
, vol.30
-
-
Cox, J.C.1
Hayhurst, A.2
Hesselberth, J.3
Bayer, T.S.4
Georgiou, G.5
Ellington, A.D.6
-
9
-
-
0036087931
-
Automated acquisition of aptamer sequences
-
Cox, J.C., Rajendran, M., Riedel, T., Davidson, E.A., Sooter, L.J., Bayer, T.S., Schmitz-Brown, M., and Ellington, A.D. 2002b. Automated acquisition of aptamer sequences. Comb. Chem. High Throughput Screen. 5: 289-299.
-
(2002)
Comb. Chem. High Throughput Screen.
, vol.5
, pp. 289-299
-
-
Cox, J.C.1
Rajendran, M.2
Riedel, T.3
Davidson, E.A.4
Sooter, L.J.5
Bayer, T.S.6
Schmitz-Brown, M.7
Ellington, A.D.8
-
10
-
-
0042337396
-
Sequence and structure space of RNAbinding peptides
-
Das, C. and Frankel, A.D. 2003. Sequence and structure space of RNAbinding peptides. Biopolymers 70: 80-85.
-
(2003)
Biopolymers
, vol.70
, pp. 80-85
-
-
Das, C.1
Frankel, A.D.2
-
11
-
-
0029437578
-
A simple code for protein: RNA interactions
-
Ellington, A.D., Symensma, T.L., Giver, L., and Baskerville, S. 1995. A simple code for protein: RNA interactions. Nucleic Acids Symp. Ser. 33: 156-159.
-
(1995)
Nucleic Acids Symp. Ser.
, vol.33
, pp. 156-159
-
-
Ellington, A.D.1
Symensma, T.L.2
Giver, L.3
Baskerville, S.4
-
12
-
-
0030457135
-
An RNA groove
-
Ellington, A.D., Leclerc, F., and Cedergren, R. 1996. An RNA groove. Nat. Struct. Biol. 3: 981-984.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 981-984
-
-
Ellington, A.D.1
Leclerc, F.2
Cedergren, R.3
-
13
-
-
0024920024
-
Cross-activation of the Rex proteins of HTLV-I and BLV and of the Rev. protein of HIV-1 and nonreciprocal interactions with their RNA responsive elements
-
Felber, B.K., Derse, D., Athanassopoulos, A., Campbell, M., and Pavlakis, G.N. 1989. Cross-activation of the Rex proteins of HTLV-I and BLV and of the Rev. protein of HIV-1 and nonreciprocal interactions with their RNA responsive elements. New Biol. 1: 318-328.
-
(1989)
New Biol.
, vol.1
, pp. 318-328
-
-
Felber, B.K.1
Derse, D.2
Athanassopoulos, A.3
Campbell, M.4
Pavlakis, G.N.5
-
14
-
-
0034034727
-
Fitting peptides into the RNA world
-
Frankel, A.D. 2000. Fitting peptides into the RNA world. Curr. Opin. Struct. Biol. 10: 332-340.
-
(2000)
Curr. Opin. Struct. Biol.
, vol.10
, pp. 332-340
-
-
Frankel, A.D.1
-
16
-
-
0017238248
-
The self-association of adenosine-50-triphosphate studied by circular dichroism at low ionic strengths
-
Gilligan 3rd, T.J. and Schwarz, G. 1976. The self-association of adenosine-50-triphosphate studied by circular dichroism at low ionic strengths. Biophys. Chem. 4: 55-63.
-
(1976)
Biophys. Chem.
, vol.4
, pp. 55-63
-
-
Gilligan III, T.J.1
Schwarz, G.2
-
17
-
-
0027441983
-
Selective optimization of the Rev-binding element of HIV-1
-
Giver, L., Bartel, D., Zapp, M., Pawul, A., Green, M., and Ellington, A.D. 1993. Selective optimization of the Rev-binding element of HIV-1. Nucleic Acids Res. 21: 5509-5516.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 5509-5516
-
-
Giver, L.1
Bartel, D.2
Zapp, M.3
Pawul, A.4
Green, M.5
Ellington, A.D.6
-
18
-
-
0029868515
-
Selection of RNAbinding peptides in vivo
-
Harada, K., Martin, S.S., and Frankel, A.D. 1996. Selection of RNAbinding peptides in vivo. Nature 380: 175-179.
-
(1996)
Nature
, vol.380
, pp. 175-179
-
-
Harada, K.1
Martin, S.S.2
Frankel, A.D.3
-
19
-
-
0030918978
-
Human ribosomal protein L7 binds RNA with an ahelical arginine-rich and lysine-rich domain
-
Hemmerich, P., Bosbach, S., von Mikecz, A., and Krawinkel, U. 1997. Human ribosomal protein L7 binds RNA with an ahelical arginine-rich and lysine-rich domain. Eur. J. BioChem. 245: 549-556.
-
(1997)
Eur. J. BioChem.
, vol.245
, pp. 549-556
-
-
Hemmerich, P.1
Bosbach, S.2
Von Mikecz, A.3
Krawinkel, U.4
-
20
-
-
0033572743
-
Anchoring an extended HTLV-1 Rex peptide within an RNA major groove containing junctional base triples
-
Jiang, F., Gorin, A., Hu, W., Majumdar, A., Baskerville, S., Xu, W., Ellington, A., and Patel, D.J. 1999. Anchoring an extended HTLV-1 Rex peptide within an RNA major groove containing junctional base triples. Structure Fold. Des. 7: 1461-1472.
-
(1999)
Structure Fold. Des.
, vol.7
, pp. 1461-1472
-
-
Jiang, F.1
Gorin, A.2
Hu, W.3
Majumdar, A.4
Baskerville, S.5
Xu, W.6
Ellington, A.7
Patel, D.J.8
-
21
-
-
0029294685
-
In vitro selection of RNA lectins: Using combinatorial chemistry to interpret ribozyme evolution
-
Lato, S.M., Boles, A.R., and Ellington, A.D. 1995. In vitro selection of RNA lectins: Using combinatorial chemistry to interpret ribozyme evolution. Chem. Biol. 2: 291-303.
-
(1995)
Chem. Biol.
, vol.2
, pp. 291-303
-
-
Lato, S.M.1
Boles, A.R.2
Ellington, A.D.3
-
22
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
Mathews, D.H., Sabina, J., Zuker, M., and Turner, D.H. 1999. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288: 911-940.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
23
-
-
0026651395
-
Conformation of the TAR RNA-arginine complex by NMR spectroscopy
-
Puglisi, J.D., Tan, R., Calnan, B.J., Frankel, A.D., and Williamson, J.R. 1992. Conformation of the TAR RNA-arginine complex by NMR spectroscopy. Science 257: 76-80.
-
(1992)
Science
, vol.257
, pp. 76-80
-
-
Puglisi, J.D.1
Tan, R.2
Calnan, B.J.3
Frankel, A.D.4
Williamson, J.R.5
-
24
-
-
0028858599
-
Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex
-
Puglisi, J.D., Chen, L., Blanchard, S., and Frankel, A.D. 1995. Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex. Science 270: 1200-1203.
-
(1995)
Science
, vol.270
, pp. 1200-1203
-
-
Puglisi, J.D.1
Chen, L.2
Blanchard, S.3
Frankel, A.D.4
-
25
-
-
0032575334
-
Altering the context of an RNA bulge switches the binding specificities of two viral Tat proteins
-
Smith, C.A., Crotty, S., Harada, Y., and Frankel, A.D. 1998. Altering the context of an RNA bulge switches the binding specificities of two viral Tat proteins. Biochemistry 37: 10808-10814.
-
(1998)
Biochemistry
, vol.37
, pp. 10808-10814
-
-
Smith, C.A.1
Crotty, S.2
Harada, Y.3
Frankel, A.D.4
-
26
-
-
0033634797
-
An RNA-binding chameleon
-
Smith, C.A., Calabro, V., and Frankel, A.D. 2000a. An RNA-binding chameleon. Mol. Cell 6: 1067-1076.
-
(2000)
Mol. Cell
, vol.6
, pp. 1067-1076
-
-
Smith, C.A.1
Calabro, V.2
Frankel, A.D.3
-
27
-
-
0033932025
-
Using peptides as models of RNA-protein interactions
-
Smith, C.A., Chen, L., and Frankel, A.D. 2000b. Using peptides as models of RNA-protein interactions. Methods Enzymol. 318: 423-438.
-
(2000)
Methods Enzymol.
, vol.318
, pp. 423-438
-
-
Smith, C.A.1
Chen, L.2
Frankel, A.D.3
-
28
-
-
0025251610
-
Different sites of interaction for Rev, Tev, and Rex proteins within the Rev-responsive element of human immunodeficiency virus type 1
-
Solomin, L., Felber, B.K., and Pavlakis, G.N. 1990. Different sites of interaction for Rev, Tev, and Rex proteins within the Rev-responsive element of human immunodeficiency virus type 1. J. Virol. 64: 6010-6017.
-
(1990)
J. Virol.
, vol.64
, pp. 6010-6017
-
-
Solomin, L.1
Felber, B.K.2
Pavlakis, G.N.3
-
29
-
-
0030713372
-
RNA recognition by a bent α-helix regulates transcriptional antitermination in phage λ
-
Su, L., Radek, J.T., Hallenga, K., Hermanto, P., Chan, G., Labeots, L.A., and Weiss, M.A. 1997. RNA recognition by a bent α-helix regulates transcriptional antitermination in phage λ. Biochemistry 36 12722-12732.
-
(1997)
Biochemistry
, vol.36
, pp. 12722-12732
-
-
Su, L.1
Radek, J.T.2
Hallenga, K.3
Hermanto, P.4
Chan, G.5
Labeots, L.A.6
Weiss, M.A.7
-
30
-
-
0028596537
-
Costabilization of peptide and RNA structure in an HIV Rev. peptide-RRE complex
-
Tan, R. and Frankel, A.D. 1994. Costabilization of peptide and RNA structure in an HIV Rev. peptide-RRE complex. Biochemistry 33: 14579-14585.
-
(1994)
Biochemistry
, vol.33
, pp. 14579-14585
-
-
Tan, R.1
Frankel, A.D.2
-
31
-
-
0029048796
-
Structural variety of arginine-rich RNA-binding peptides
-
Tan, R. and Frankel, A.D. 1995. Structural variety of arginine-rich RNA-binding peptides. Proc. Natl. Acad. Sci. 92: 5282-5286.
-
(1995)
Proc. Natl. Acad. Sci.
, vol.92
, pp. 5282-5286
-
-
Tan, R.1
Frankel, A.D.2
-
32
-
-
0027251792
-
RNA recognition by an isolated α helix
-
Tan, R., Chen, L., Buettner, J.A., Hudson, D., and Frankel, A.D. 1993. RNA recognition by an isolated α helix. Cell 73: 1031-1040.
-
(1993)
Cell
, vol.73
, pp. 1031-1040
-
-
Tan, R.1
Chen, L.2
Buettner, J.A.3
Hudson, D.4
Frankel, A.D.5
-
33
-
-
0027476547
-
Electrostatic interactions modulate the RNA-binding and transactivation specificities of the human immunodeficiency virus and simian immunodeficiency virus Tat proteins
-
Tao, J. and Frankel, A.D. 1993. Electrostatic interactions modulate the RNA-binding and transactivation specificities of the human immunodeficiency virus and simian immunodeficiency virus Tat proteins. Proc. Natl. Acad. Sci. 90: 1571-1575.
-
(1993)
Proc. Natl. Acad. Sci.
, vol.90
, pp. 1571-1575
-
-
Tao, J.1
Frankel, A.D.2
-
34
-
-
0025863411
-
U1-snRNP-A protein selects a ten nucleotide consensus sequence from a degenerate RNA pool presented in various structural contexts
-
Tsai, D.E., Harper, D.S., and Keene, J.D. 1991. U1-snRNP-A protein selects a ten nucleotide consensus sequence from a degenerate RNA pool presented in various structural contexts. Nucleic Acids Res. 19: 4931-4936.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 4931-4936
-
-
Tsai, D.E.1
Harper, D.S.2
Keene, J.D.3
-
35
-
-
0025879947
-
The Rex regulatory protein of human T-cell lymphotropic virus type I binds specifically to its target site within the viral RNA
-
Unge, T., Solomin, L., Mellini, M., Derse, D., Felber, B.K., and Pavlakis, G.N. 1991. The Rex regulatory protein of human T-cell lymphotropic virus type I binds specifically to its target site within the viral RNA. Proc. Natl. Acad. Sci. 88: 7145-7149.
-
(1991)
Proc. Natl. Acad. Sci.
, vol.88
, pp. 7145-7149
-
-
Unge, T.1
Solomin, L.2
Mellini, M.3
Derse, D.4
Felber, B.K.5
Pavlakis, G.N.6
-
36
-
-
0032419957
-
RNA recognition by arginine-rich peptide motifs
-
Weiss, M.A. and Narayana, N. 1998. RNA recognition by arginine-rich peptide motifs. Biopolymers 48: 167-180.
-
(1998)
Biopolymers
, vol.48
, pp. 167-180
-
-
Weiss, M.A.1
Narayana, N.2
-
37
-
-
0029847929
-
Anti-peptide aptamers recognize amino acid sequence and bind a protein epitope
-
Xu, W. and Ellington, A.D. 1996. Anti-peptide aptamers recognize amino acid sequence and bind a protein epitope. Proc. Natl. Acad. Sci. 93: 7475-7480.
-
(1996)
Proc. Natl. Acad. Sci.
, vol.93
, pp. 7475-7480
-
-
Xu, W.1
Ellington, A.D.2
-
38
-
-
0030475417
-
Deep penetration of an α-helix into a widened RNA major groove in the HIV-1 rev peptide-RNA aptamer complex
-
Ye, X., Gorin, A., Ellington, A.D., and Patel, D.J. 1996. Deep penetration of an a-helix into α widened RNA major groove in the HIV-1 rev peptide-RNA aptamer complex. Nat. Struct. Biol. 3: 1026-1033.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 1026-1033
-
-
Ye, X.1
Gorin, A.2
Ellington, A.D.3
Patel, D.J.4
-
39
-
-
0033200399
-
RNA architecture dictates the conformations of a bound peptide
-
Ye, X., Gorin, A., Frederick, R., Hu, W., Majumdar, A., Xu, W., McLendon, G., Ellington, A., and Patel, D.J. 1999. RNA architecture dictates the conformations of a bound peptide. Chem. Biol. 6: 657-669.
-
(1999)
Chem. Biol.
, vol.6
, pp. 657-669
-
-
Ye, X.1
Gorin, A.2
Frederick, R.3
Hu, W.4
Majumdar, A.5
Xu, W.6
McLendon, G.7
Ellington, A.8
Patel, D.J.9
|