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Volumn 179, Issue 3, 2008, Pages 1693-1704

Comparative analyses of human single- and multilocus tandem repeats

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA; MOLECULAR MARKER;

EID: 52049100082     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.108.087882     Document Type: Article
Times cited : (24)

References (48)
  • 1
    • 0032528891 scopus 로고    scopus 로고
    • Analysis of distribution in the human, pig, and rat genomes points toward a general subtelomeric origin of minisatellite structures
    • AMARGER, V., D. GAUGUIER, M. YERLE, F. APIOU, P. PINTON et al., 1998 Analysis of distribution in the human, pig, and rat genomes points toward a general subtelomeric origin of minisatellite structures. Genomics 52: 62-71.
    • (1998) Genomics , vol.52 , pp. 62-71
    • AMARGER, V.1    GAUGUIER, D.2    YERLE, M.3    APIOU, F.4    PINTON, P.5
  • 2
    • 34248358963 scopus 로고    scopus 로고
    • Progress in understanding the biology of the human mutagen LINE-1
    • BABUSHOK, D. V., and H. H. KAZAZIAN, 2007 Progress in understanding the biology of the human mutagen LINE-1. Hum. Mutat. 28: 527-539.
    • (2007) Hum. Mutat , vol.28 , pp. 527-539
    • BABUSHOK, D.V.1    KAZAZIAN, H.H.2
  • 3
    • 0036250811 scopus 로고    scopus 로고
    • Alu repeats and human genomic diversity
    • BATZEER, M. A., and P. L. DEININGER, 2002 Alu repeats and human genomic diversity. Nat. Rev. Genet. 3: 370-380.
    • (2002) Nat. Rev. Genet , vol.3 , pp. 370-380
    • BATZEER, M.A.1    DEININGER, P.L.2
  • 4
    • 16944366697 scopus 로고    scopus 로고
    • Insulin VNTR allele-specific effect in type 1 diabetes depends on identity of untransmitted paternal allele
    • BENNETT, S. T., A. J. WILSON, L. ESPOSITO, N. BOUZEKRI, D. E. UNDLIEN et al., 1997 Insulin VNTR allele-specific effect in type 1 diabetes depends on identity of untransmitted paternal allele. Nat. Genet. 17: 350-352.
    • (1997) Nat. Genet , vol.17 , pp. 350-352
    • BENNETT, S.T.1    WILSON, A.J.2    ESPOSITO, L.3    BOUZEKRI, N.4    UNDLIEN, D.E.5
  • 5
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • BENSON, G., 1999 Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27: 573-580.
    • (1999) Nucleic Acids Res , vol.27 , pp. 573-580
    • BENSON, G.1
  • 6
    • 11844273816 scopus 로고    scopus 로고
    • Tandem cyclic alignment
    • BENSON, G., 2005 Tandem cyclic alignment. Discrete Appl. Math. 146: 124-133.
    • (2005) Discrete Appl. Math , vol.146 , pp. 124-133
    • BENSON, G.1
  • 7
    • 15944382704 scopus 로고    scopus 로고
    • TRbase: A database relating tandem repeats to disease genes for the human genome
    • BOBY, T., A. M. PATCH and S. J. AVES, 2005 TRbase: a database relating tandem repeats to disease genes for the human genome. Bioinformatics 21: 811-816.
    • (2005) Bioinformatics , vol.21 , pp. 811-816
    • BOBY, T.1    PATCH, A.M.2    AVES, S.J.3
  • 8
    • 0037382225 scopus 로고    scopus 로고
    • Hypermutable minisatellites, a human affair
    • BOIS, P. R. J., 2003 Hypermutable minisatellites, a human affair. Genomics 81: 349-355.
    • (2003) Genomics , vol.81 , pp. 349-355
    • BOIS, P.R.J.1
  • 9
    • 0032855564 scopus 로고    scopus 로고
    • Minisatellite instability and germline mutation
    • BOIS, P., and A. J. JEFFREYS, 1999 Minisatellite instability and germline mutation. Cell. Mol. Life Sci. 55: 1636-1648.
    • (1999) Cell. Mol. Life Sci , vol.55 , pp. 1636-1648
    • BOIS, P.1    JEFFREYS, A.J.2
  • 11
    • 33749991391 scopus 로고    scopus 로고
    • The rise, fall and renaissance of microsatellites in eukaryotic genomes
    • BUSCHIAZZO, E., and N. J. GEMMELL, 2006 The rise, fall and renaissance of microsatellites in eukaryotic genomes. BioEssays 28: 1040-1050.
    • (2006) BioEssays , vol.28 , pp. 1040-1050
    • BUSCHIAZZO, E.1    GEMMELL, N.J.2
  • 12
    • 0028238234 scopus 로고
    • Complex recombination events at the hypermutable minisatellite CEB1 (D2S90)
    • BUARD, J., and G. VERGNAUD, 1994 Complex recombination events at the hypermutable minisatellite CEB1 (D2S90). EMBO J. 13: 3203-3210.
    • (1994) EMBO J , vol.13 , pp. 3203-3210
    • BUARD, J.1    VERGNAUD, G.2
  • 13
    • 0022342294 scopus 로고
    • Hypervariable telomeric sequences from the human sex chromosomes are pseudoautosomal
    • COOKE, H. J., W. R. A. BROWN and G. A. RAPPOLD, 1985 Hypervariable telomeric sequences from the human sex chromosomes are pseudoautosomal. Nature 317: 687-692.
    • (1985) Nature , vol.317 , pp. 687-692
    • COOKE, H.J.1    BROWN, W.R.A.2    RAPPOLD, G.A.3
  • 14
    • 0031008401 scopus 로고    scopus 로고
    • Characteristic enrichment of DNA repeats in different genomes
    • COX, R., and S. M. MIRKIN, 1997 Characteristic enrichment of DNA repeats in different genomes. Proc. Natl. Acad. Sci. USA 94: 5237-5242.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 5237-5242
    • COX, R.1    MIRKIN, S.M.2
  • 16
    • 0038444067 scopus 로고    scopus 로고
    • Predicting human minisatellite polymorphism
    • DENOEUD, F., G. VERGNAUD and G. BENSON, 2003 Predicting human minisatellite polymorphism. Genome Res. 5: 856-867.
    • (2003) Genome Res , vol.5 , pp. 856-867
    • DENOEUD, F.1    VERGNAUD, G.2    BENSON, G.3
  • 17
    • 25844487226 scopus 로고    scopus 로고
    • Diseases of unstable repeat expansion: Mechanisms and common principles
    • GATCHEL, J. R., and H. Y. ZOGHBI, 2005 Diseases of unstable repeat expansion: mechanisms and common principles. Nat. Rev. Genet. 6: 743-755.
    • (2005) Nat. Rev. Genet , vol.6 , pp. 743-755
    • GATCHEL, J.R.1    ZOGHBI, H.Y.2
  • 19
    • 0037039323 scopus 로고    scopus 로고
    • Short interspersed transposable elements (SINEs) are excluded from imprinted regions in the human genome
    • GREALLY, J. M., 2002 Short interspersed transposable elements (SINEs) are excluded from imprinted regions in the human genome. Proc. Natl. Acad. Sci. USA 99: 327-332.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 327-332
    • GREALLY, J.M.1
  • 20
    • 0031952315 scopus 로고    scopus 로고
    • Microsatellite origins in yeast and humans
    • HABER, J. E., and E. J. LOUIS, 1998 Microsatellite origins in yeast and humans. Genomics 48: 132-135.
    • (1998) Genomics , vol.48 , pp. 132-135
    • HABER, J.E.1    LOUIS, E.J.2
  • 21
    • 33748042297 scopus 로고    scopus 로고
    • Tandem repeats in the CpG islands of imprinted genes
    • HUTTER, B., V. HELMS and M. PAULSEN, 2006 Tandem repeats in the CpG islands of imprinted genes. Genomics 88: 323-332.
    • (2006) Genomics , vol.88 , pp. 323-332
    • HUTTER, B.1    HELMS, V.2    PAULSEN, M.3
  • 22
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • INTERNATIONAL HUMAN GENOME SEQUENCING CONSORTIUM
    • INTERNATIONAL HUMAN GENOME SEQUENCING CONSORTIUM, 2001 Initial sequencing and analysis of the human genome. Nature 409: 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
  • 23
    • 0028364565 scopus 로고    scopus 로고
    • JEFFREYS, A. J., K. TAMAKI, A. MACL EOD, D. G. MONCKTON, D. L. NEIL et al., 1994 Complex gene conversion events in germline mutation at human minisatellites. Nat. Genet. 6: 136-145.
    • JEFFREYS, A. J., K. TAMAKI, A. MACL EOD, D. G. MONCKTON, D. L. NEIL et al., 1994 Complex gene conversion events in germline mutation at human minisatellites. Nat. Genet. 6: 136-145.
  • 24
    • 26444503776 scopus 로고    scopus 로고
    • Factors influencing recombination frequency and distribution in a human meiotic crossover hotspot
    • JEFFREYS, A. J., and R. NEUMANN, 2005 Factors influencing recombination frequency and distribution in a human meiotic crossover hotspot. Hum. Mol. Genet. 14: 2277-2287.
    • (2005) Hum. Mol. Genet , vol.14 , pp. 2277-2287
    • JEFFREYS, A.J.1    NEUMANN, R.2
  • 25
    • 0023868393 scopus 로고
    • Spontaneous mutation rates to new length alleles at tandem-repetitive hypervariable loci in humans
    • JEFFREYS, A. J., N. J. ROYLE, V. WILSON and Z. WONG, 1988 Spontaneous mutation rates to new length alleles at tandem-repetitive hypervariable loci in humans. Nature 332: 278-281.
    • (1988) Nature , vol.332 , pp. 278-281
    • JEFFREYS, A.J.1    ROYLE, N.J.2    WILSON, V.3    WONG, Z.4
  • 26
    • 0032133324 scopus 로고    scopus 로고
    • High-resolution mapping of crossovers in human sperm defined a minisatellite-associated recombination hotspot
    • JEFFREYS, A. J., J. MURRAY and R. NEUMANN, 1998 High-resolution mapping of crossovers in human sperm defined a minisatellite-associated recombination hotspot. Mol. Cell 2: 267-273.
    • (1998) Mol. Cell , vol.2 , pp. 267-273
    • JEFFREYS, A.J.1    MURRAY, J.2    NEUMANN, R.3
  • 27
    • 31844441063 scopus 로고    scopus 로고
    • Origin and diversification of minisatellites derived from human Alu sequences
    • JURKA, J., and A. J. GENTLES, 2005 Origin and diversification of minisatellites derived from human Alu sequences. Gene 365: 21-26.
    • (2005) Gene , vol.365 , pp. 21-26
    • JURKA, J.1    GENTLES, A.J.2
  • 29
    • 23444458557 scopus 로고    scopus 로고
    • KELADA, S. N., P. COSTA-MALLEN, H. CHECKOWAY, C. S. CARLSON, T. S. WELLERet al., 2005 Dopamine transporter (SLC6A3) 59 region haplotypes significantly affect transcriptional activity in vitro but are not associated with Parkinson's disease. Pharmacogenet. Genomics 15: 659-668.
    • KELADA, S. N., P. COSTA-MALLEN, H. CHECKOWAY, C. S. CARLSON, T. S. WELLERet al., 2005 Dopamine transporter (SLC6A3) 59 region haplotypes significantly affect transcriptional activity in vitro but are not associated with Parkinson's disease. Pharmacogenet. Genomics 15: 659-668.
  • 30
    • 38849170546 scopus 로고    scopus 로고
    • Sequence-based estimation of minisatellite and microsatellite repeat variability
    • LEGENDRE, M., N. POCHET, T. PAK and K. J. VERSTREPEN, 2007 Sequence-based estimation of minisatellite and microsatellite repeat variability. Genome Res. 17: 1787-1796.
    • (2007) Genome Res , vol.17 , pp. 1787-1796
    • LEGENDRE, M.1    POCHET, N.2    PAK, T.3    VERSTREPEN, K.J.4
  • 31
    • 35648976118 scopus 로고    scopus 로고
    • The diploid genome sequence of an individual human
    • LEVY, S., G. SUTTON, P. C. NG, L. FEUK, A. L. HALPERN et al., 2007 The diploid genome sequence of an individual human. PLoS Biol. 5: 2113-2144.
    • (2007) PLoS Biol , vol.5 , pp. 2113-2144
    • LEVY, S.1    SUTTON, G.2    NG, P.C.3    FEUK, L.4    HALPERN, A.L.5
  • 32
    • 0036897944 scopus 로고    scopus 로고
    • Microsatellites: Genomic distribution, putative functions and mutational mechanisms: a review
    • LI, Y. C., A. B. KOROL, T. FAHIMA, A. BEILES and E. NEVO, 2002 Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Mol. Ecol. 11: 2453-2465.
    • (2002) Mol. Ecol , vol.11 , pp. 2453-2465
    • LI, Y.C.1    KOROL, A.B.2    FAHIMA, T.3    BEILES, A.4    NEVO, E.5
  • 33
    • 33645814398 scopus 로고    scopus 로고
    • CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1
    • LING, J. Q., T. LI, J. F. HU, T. H. VU, H. L. CHEN et al., 2006 CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1. Science 312: 269-272.
    • (2006) Science , vol.312 , pp. 269-272
    • LING, J.Q.1    LI, T.2    HU, J.F.3    VU, T.H.4    CHEN, H.L.5
  • 34
    • 0023104845 scopus 로고
    • Variable number of tandem repeat (VNTR) markers for human gene mapping
    • NAKAMURA, Y., M. LEPPERT, P. O'CONNELL, R. WOLFF, T. HOLM et al., 1987 Variable number of tandem repeat (VNTR) markers for human gene mapping. Science 235: 1616-1622.
    • (1987) Science , vol.235 , pp. 1616-1622
    • NAKAMURA, Y.1    LEPPERT, M.2    O'CONNELL, P.3    WOLFF, R.4    HOLM, T.5
  • 35
    • 0031613041 scopus 로고    scopus 로고
    • VNTR (variable number tandem repeat) sequences as transcriptional, translational, or functional regulators
    • NAKAMURA, Y., K. KOYAMA and M. MATSUSHIMA, 1998 VNTR (variable number tandem repeat) sequences as transcriptional, translational, or functional regulators. J. Hum. Genet. 43: 149-152.
    • (1998) J. Hum. Genet , vol.43 , pp. 149-152
    • NAKAMURA, Y.1    KOYAMA, K.2    MATSUSHIMA, M.3
  • 37
  • 38
    • 0038799991 scopus 로고    scopus 로고
    • Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae
    • PAQUES, F., and J. E. HABER, 1999 Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 63: 349-404.
    • (1999) Microbiol. Mol. Biol. Rev , vol.63 , pp. 349-404
    • PAQUES, F.1    HABER, J.E.2
  • 39
    • 0032486384 scopus 로고    scopus 로고
    • The INS 59 variable number of tandem repeats is associated with IGF2 expression in humans
    • PAQUETTE, J., N. GIANNOUKAKIS, C. P OLYCHRONAKOS, P. VAFIADIS and C. DEAL, 1998 The INS 59 variable number of tandem repeats is associated with IGF2 expression in humans. J. Biol. Chem. 273: 14158-14164.
    • (1998) J. Biol. Chem , vol.273 , pp. 14158-14164
    • PAQUETTE, J.1    GIANNOUKAKIS, N.2    OLYCHRONAKOS, C.P.3    VAFIADIS, P.4    DEAL, C.5
  • 40
    • 28944438876 scopus 로고    scopus 로고
    • Molecular evolution of minisatellites in hemiaxcomycetous yeasts
    • RICHARD, G.-F., and B. DUJON, 2006 Molecular evolution of minisatellites in hemiaxcomycetous yeasts. Mol. Biol. Evol. 23: 189-202.
    • (2006) Mol. Biol. Evol , vol.23 , pp. 189-202
    • RICHARD, G.-F.1    DUJON, B.2
  • 41
    • 0034252264 scopus 로고    scopus 로고
    • Mini- and microsatellite expansions: The recombination connection
    • RICHARD, G.-F., and F. PAQUES, 2000 Mini- and microsatellite expansions: the recombination connection. EMBO Rep. 1: 122-126.
    • (2000) EMBO Rep , vol.1 , pp. 122-126
    • RICHARD, G.-F.1    PAQUES, F.2
  • 42
    • 0024120450 scopus 로고
    • Clustering of hypervariable minisatellites in the proterminal regions of human autosomes
    • ROYLE, N. J., R. E. CLARKSON, Z. WONG and A. J. JEFFREYS, 1988 Clustering of hypervariable minisatellites in the proterminal regions of human autosomes. Genomics 3: 352-360.
    • (1988) Genomics , vol.3 , pp. 352-360
    • ROYLE, N.J.1    CLARKSON, R.E.2    WONG, Z.3    JEFFREYS, A.J.4
  • 43
    • 20444426255 scopus 로고    scopus 로고
    • Paramutation: An encounter leaving a lasting impression
    • STAM, M., and O. M. SCHEID, 2005 Paramutation: an encounter leaving a lasting impression. Trends Plant Sci. 10: 283-290.
    • (2005) Trends Plant Sci , vol.10 , pp. 283-290
    • STAM, M.1    SCHEID, O.M.2
  • 44
    • 0036811708 scopus 로고    scopus 로고
    • The regulatory regions required for B' paramutation and expression are located far upstream of the maize b1 transcribed sequences
    • STAM, M., C. BELELE, W. RAMAKRISHNA, J. E. DORWEILER, J. L. BENNETZENet al., 2002 The regulatory regions required for B' paramutation and expression are located far upstream of the maize b1 transcribed sequences. Genetics 162: 917-930.
    • (2002) Genetics , vol.162 , pp. 917-930
    • STAM, M.1    BELELE, C.2    RAMAKRISHNA, W.3    DORWEILER, J.E.4    BENNETZEN, J.L.5
  • 45
    • 0028140177 scopus 로고
    • Possible role of natural selection in the formation of tandem-repetitive noncoding DNA
    • STEPHAN, W., and S. CHO, 1994 Possible role of natural selection in the formation of tandem-repetitive noncoding DNA. Genetics 136: 333-341.
    • (1994) Genetics , vol.136 , pp. 333-341
    • STEPHAN, W.1    CHO, S.2
  • 46
    • 0033865403 scopus 로고    scopus 로고
    • Minisatellites: Mutability and genome architecture
    • VERGNAUD, G., and F. DENOEUD, 2000 Minisatellites: mutability and genome architecture. Genome Res. 10: 899-907.
    • (2000) Genome Res , vol.10 , pp. 899-907
    • VERGNAUD, G.1    DENOEUD, F.2
  • 48
    • 20144387806 scopus 로고    scopus 로고
    • Comparison of fine-scale recombination rates in humans and chimpanzees
    • WINCKLER, W., 2005 Comparison of fine-scale recombination rates in humans and chimpanzees. Science 308: 107-111.
    • (2005) Science , vol.308 , pp. 107-111
    • WINCKLER, W.1


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