Analysis of distribution in the human, pig, and rat genomes points toward a general subtelomeric origin of minisatellite structures

Genomics

Volumn 52, Issue 1, 1998, Pages 62-71

  Amarger, Valérie ^a,f   Gauguier, Dominique ^b,c   Yerle, Martine ^d   Apiou, Françoise ^e   Pinton, Philippe ^d   Giraudeau, Fabienne ^a,g   Monfouilloux, Sylvaine ^a   Lathrop, Mark ^b   Dutrillaux, Bernard ^e   Buard, Jérôme ^a,g   Vergnaud, Gilles ^a,c,f  

^a INSTITUT DE BIOLOGIE   (France)

^b UNIVERSITY OF OXFORD   (United Kingdom)

^c CENTRE D ETUDES DU BOUCHET   (France)

^d CEMAGREF   (France)

^e INSTITUT CURIE   (France)

^f UNIVERSITÉ PARIS SACLAY   (France)

^g UNIVERSITY OF LEICESTER   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DNA MINISATELLITE;

ARTICLE; CHROMOSOME MAP; CHROMOSOME REARRANGEMENT; CYTOGENETICS; DNA DETERMINATION; DNA STRUCTURE; GENETIC LINKAGE; GENOME; HUMAN; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; RAT; SPECIES DIFFERENCE; SWINE;

EID: 0032528891     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1998.5365     Document Type: Article

References (49)

1. Apiou F., Flagiello D., Cillo C., Malfoy B., Poupon M. F., Dutrillaux B. Fine mapping of human HOX gene clusters. Cytogenet. Cell Genet. 73:1996;114-115.
2. Bennett S. T., Lucassen A. M., Gough S. C. L., Powell E. E., Undlien D. E., Pritchard L. E., Merriman M. E., Kawaguchi Y., Dronsfield M. J., Pociot F., Nerup J, . Bouzekri N., Cambon-Thomsen A., Ronningen K. S., Barnett A. H., Bain S. C., Todd J. A. Susceptibility to human type 1 diabetes at IDDM2 is determined by tandem repeat variation at the insulin gene minisatellite locus. Nat. Genet. 9:1995;284-292.
3. Bihoreau M. T., Gauguier D., Kato N., Hyne G., Lindpaintner K., Rapp J. P., James M. R., Lathrop G. M. A linkage map of the rat genome derived from three F2 crosses. Genome Res. 7:1997;434-440.
4. Boguski M. S., Birkenmeier E. H., Elshourbagy N. A., Taylor M. T., Gordon J. I. Evolution of the apolipoproteins. J. Biol. Chem. 261:1986;6398-6407.
5. Bray-Ward P., Menninger J., Lieman J., Desai T., Mokady N., Banks A., Ward D. C. Integration of the cytogenetic, genetic, and physical maps of the human genome by FISH mapping of CEPH YAC clones. Genomics. 32:1996;1-14.
6. Buard J., Vergnaud G. Complex recombination events at the hypermutable minisatellite CEB1 (D2S90). EMBO J. 13:1994;3203-3210.
7. DeBry R. W., Seldin M. F. Human/mouse homology relationships. Genomics. 33:1996;337-351.
8. Dutrillaux B. Nouveau système de marquage chromosomique: Les bandes T. Chromosoma. 41:1973;395-402.
9. Eichler E. E., Lu F., Shen Y., Antonacci R., Jurecic V., Doggett N. A., Moyzis R. K., Baldini A., Gibbs R. A., Nelson D. L. Duplication of a gene-rich cluster between 16p11.1 and Xq28: A novel pericentromeric-directed mechanism for paralogous genome evolution. Hum. Mol. Genet. 5:1996;899-912.
10. Feinberg A. P., Vogelstein B. A technique for radiolabelling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132:1983;6-13.
11. Gauguier D., Froguel P., Parent V., Bernard C., Bihoreau M. T., Portha B., James M. R., Penicaud L., Lathrop M., Ktorza A. Chromosomal mapping of genetic loci associated with the GK rat. Nat. Genet. 12:1996;38-43.
12. Georges M., Gunawardana A., Threadgill D. W., Lathrop M., Olsaker I., Mishra A., Sargeant L. L., Schoeberlein A., Steele M. R., Terry C., Threadgill D. S., Zhao X., Holm T., Fries R., Womack J. E. Characterization of a set of variable number of tandem repeat markers conserved in Bovidae. Genomics. 11:1991;24-32.
13. Goureau A., Yerle M., Schmitz A., Riquet J., Milan D., Pinton P., Frelat G., Gellin J. Human and porcine correspondence of chromosome segments using bidirectional chromosome painting. Genomics. 36:1996;252-262.
14. Gu F., Hindkjaer J., Gustavsson I., Bolund L. A signal of telomeric sequences on porcine chromosome 6q21-q22 detected by primed in situ labelling. Chromosome Res. 4:1996;251-252.
15. Gustavsson I. Standard karyotype of the domestic pig. Committee for the Standardized Karyotype of the Domestic Pig. Hereditas. 109:1988;151-157.
16. Heale S. M., Petes T. D. The stabilization of repetitive tracts of DNA by variant repeats requires a functional mismatch repair system. Cell. 83:1995;539-545.
17. Heery D. M., Gannon F., Powell R. A simple method for subcloning DNA fragments from gel slices. Trends Genet. 6:1990;173.
18. Hu C. A., Lin W. W., Valle D. Cloning, characterization, and expression of cDNAs encoding human delta 1-pyrroline-5-carboxylate dehydrogenase. J. Biol. Chem. 271:1996;9795-9800.
19. Janel N., Schibler L., Oustry A., Kerbiriou-Nabias D., Cribiu E. P., Vaiman D. The localization of the von Willebrand factor gene on cattle, sheep and goat chromosomes illustrates karyotype evolution in mammals. Mamm. Genome. 7:1996;633-634.
20. Jeffreys A. J., Tamaki K., MacLeod A., Monckton D. G., Neil D. L., Armour J. A. L. Complex gene conversion events in germline mutation at human minisatellites. Nat. Genet. 6:1994;136-145.
21. Jeffreys A. J., Wilson V., Kelly R., Taylor B. A., Bulfield G. Mouse DNA 'fingerprints': Analysis of chromosome localization and germ-line stability of hypervariable loci in recombinant inbred strains. Nucleic Acids Res. 15:1987;2823-2836.
22. Julier C., de Gouyon B., Georges M., Guénet J. L., Nakamura Y., Avner P., Lathrop G. M. Minisatellite linkage maps in the mouse by cross-hybridization with human probes containing tandem repeats. Proc. Natl. Acad. Sci. USA. 87:1990;4585-4589.
23. Krontiris T. G., Devlin B., Karp D. D., Robert N. J., Risch N. An association between the risk of cancer and mutations in the HRAS1 minisatellite locus. N. Engl. J. Med. 329:1993;517-523.
24. Lehrach H. Genome Analysis: Genetic and Physical Mapping. 1990;Cold Spring Harbor Laboratory Press, Cold Spring Harbor. p. 39-81.
25. Mariat D., De Gouyon B., Julier C., Lathrop M., Vergnaud G. Genetic mapping through the use of synthetic tandem repeats in the mouse genome. Mamm. Genome. 4:1993;135-140.
26. Mariat D., Guérin G., Bertaud M., Vergnaud G. Modulation of polymorphic loci detection with synthetic tandem repeat variants. Mamm. Genome. 3:1992;546-549.
27. Mariat D., Vergnaud G. Detection of polymorphic loci in various genomes with synthetic tandem repeats. Genomics. 12:1992;454-458.
28. Millwood I. Y., Bihoreau M. T., Gauguier D., Hyne G., Levy E. R., Kreutz R., Lathrop G. M., Monaco A. P. A gene-based genetic linkage and comparative map of the rat X chromosome. Genomics. 40:1997;253-261.
29. Miyake Y. I., O'Brien S., Kaneda Y. Regional localization of rDNA gene on pig chromosome 10 by in situ hybridization. Jpn. J. Vet. Sci. 50:1988;341-345.
30. Monfouilloux S., Avet-Loiseau H., Amarger V., Balazs I., Pourcel C., Vergnaud G. Recent human-specific spreading of a subtelomeric domain. Genomics. 51:1998.
31. Paulsson G., Höög C., Bernholm K., Wieslander L. Balbiani ring 1 genein Chironomus tentans. J. Mol. Biol. 225:1992;349-361.
32. Pravenec M., Gauguier D., Schott J.-J., Buard J., Kren V., Bila V., Szpirer C., Szpirer J., Wang J.-M., Huang H., St. Lezin E., Spence M. A., Flodman P., Printz M., Lathrop G. M., Vergnaud G., Kurtz T. W. A genetic linkage map of the rat derived from recombinant inbred strains. Mamm. Genome. 7:1996;117-127.
33. Rettenberger G., Klett C., Zechner U., Kunz J., Vogel W., Hameister H. Visualization of the conservation of synteny between humans and pigs by heterologous chromosomal painting. Genomics. 26:1995;372-378.
34. Royle N. J., Clarkson R. E., Wong Z., Jeffreys A. J. Clustering of hypervariable minisatellites in the proterminal regions of human autosomes. Genomics. 3:1988;352-360.
35. Sabeur G., Macaya G., Kadi F., Bernardi G. The isochore patterns of mammalian genomes and their phylogenetic implications. J. Mol. Evol. 37:1993;93-108.
36. Saccone S., Caccio S., Kusuda J., Andreozzi L., Bernardi G. Identification of the gene-richest bands in human chromosomes. Gene. 174:1996;85-94.
37. Sambrook J., Fritsch E. F., Maniatis T. Molecular Cloning: A Laboratory Manual. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
38. Sjoberg A., Seaman W. T., Bellinger D. A., Griggs T. R., Nichols T. C., Chowdhary B. P. FISH mapping of the porcine vWF gene to chromosome 5q21 extends synteny homology with human chromosome 12. Hereditas. 124:1996;199-202.
39. Spurr N. K., Bryant S. P., Attwood J., Nyberg K., Cox S. A., Mills A., Bains R., Warne D., Cullin L., Povey S., Sebaoun J.-M., Weissenbach J., Cann H. M., Lathrop M., Dausset J., Marcadet-Troton A., Cohen D. European Gene Mapping Project (EUROGEM): Genetic maps based on the CEPH reference families. Eur. J. Hum. Genet. 2:1994;193-203.
40. Vergnaud G. Polymers of random short oligonucleotides detect polymorphic loci in the human genome. Nucleic Acids Res. 17:1989;7623-7630.
41. Vergnaud G., Gauguier D., Schott J.-J., Lepetit D., Lauthier V., Mariat D., Buard J. Detection, cloning, and distribution of minisatellites in some mammalian genomes. Pena S. D. J., Chakraborty R., Epplen J. T., Jeffreys A. J. DNA Fingerprinting: State of the Science. 1993;47-57 Birkhäuser, Basel.
42. Vergnaud G., Mariat D., Apiou F., Aurias A., Lathrop M., Lauthier V. The use of synthetic tandem repeats to isolate new VNTR loci: Cloning of a human hypermutable sequence. Genomics. 11:1991;135-144.
43. Virtaneva K., D'Amato E., Miao J., Koskiniemi M., Norio R., Avanzini G., Franceschetti S., Michelucci R., Tassinari C. A., Omer S., Pennachio L. A., Myers R. M., Dieguez-Lucena J. L., Krahe R., de la Chapelle A., Lehesjoki A. E. Unstable minisatellite expansion causing recessively inherited myoclonus epilepsy, EPM1. Nat. Genet. 15:1997;393-396.
44. Wells R. A., Green P., Reeders S. T. Simultaneous genetic mapping of multiple human minisatellite sequences using DNA fingerprinting. Genomics. 5:1989;761-772.
45. Wong Z., Royle N. J., Jeffreys A. J. A novel human DNA polymorphism resulting from transfer of DNA from chromosome 6 to chromosome 16. Genomics. 7:1990;222-234.
46. Yerle M., Galman O., Lahbib-Mansais Y., Gellin J. Localization of the pig luteinizing hormone/choriogonadotropin receptor gene (LHCGR) by nonradioactive in situ hybridization. Cytogenet. Cell Genet. 59:1992;48-51.
47. Yerle M., Lahbib-Mansais Y., Pinton P., Robic A., Goureau A., Milan D., Gellin J. The cytogenetic map of the domestic pig (Sus scrofa domestica. Mamm. Genome. 8:1997;592-607.
48. Yu S., Mangelsdorf M., Hewett D., Hobson L., Baker E., Eyre H. J., Lapsys N., Le Paslier D., Doggett N. A., Sutherland G. R., Richards R. I. Human chromosomal fragile site FRA16B is an amplified AT-rich minisatellite repeat. Cell. 88:1997;367-374.
49. Zoubak S., Clay O., Bernardi G. The gene distribution of the human genome. Gene. 174:1996;95-102.