메뉴 건너뛰기




Volumn 39, Issue 1, 2008, Pages 1-8

The evaluation of protein structure prediction results

Author keywords

Accuracy of protein structure models; CASP; Metapredictors; Protein structure prediction; Structure prediction servers

Indexed keywords

THREE DIMENSIONAL;

EID: 52049087189     PISSN: 10736085     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12033-007-9023-6     Document Type: Review
Times cited : (13)

References (34)
  • 2
    • 84995046262 scopus 로고
    • A large-scale experiment to assess protein structure prediction methods
    • J. Moult J. Pedersen R. Judson K. Fidelis 1995 A large-scale experiment to assess protein structure prediction methods Proteins 23 ii v
    • (1995) Proteins , vol.23
    • Moult, J.1    Pedersen, J.2    Judson, R.3    Fidelis, K.4
  • 4
    • 0034534179 scopus 로고    scopus 로고
    • The 2000 Olympic Games of protein structure prediction; Fully automated programs are being evaluated vis-a-vis human teams in the protein structure prediction experiment CAFASP2
    • D. Fischer A. Elofsson L. Rychlewski 2000 The 2000 Olympic Games of protein structure prediction; fully automated programs are being evaluated vis-a-vis human teams in the protein structure prediction experiment CAFASP2 Protein Engineering 13 667 670
    • (2000) Protein Engineering , vol.13 , pp. 667-670
    • Fischer, D.1    Elofsson, A.2    Rychlewski, L.3
  • 5
    • 0022706389 scopus 로고
    • The relation between the divergence of sequence and structure in proteins
    • C. Chothia A. Lesk 1986 The relation between the divergence of sequence and structure in proteins The EMBO Journal 5 823 826
    • (1986) The EMBO Journal , vol.5 , pp. 823-826
    • Chothia, C.1    Lesk, A.2
  • 6
    • 0026704815 scopus 로고
    • Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a data base of known protein conformations
    • M. J. Sippl S. Weitckus 1992 Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a data base of known protein conformations Proteins 13 258 271
    • (1992) Proteins , vol.13 , pp. 258-271
    • Sippl, M.J.1    Weitckus, S.2
  • 8
    • 0032612579 scopus 로고    scopus 로고
    • Ab initio protein structure prediction of CASP III targets using ROSETTA
    • K. T. Simons R. Bonneau I. Ruczinski D. Baker 1999 Ab initio protein structure prediction of CASP III targets using ROSETTA Proteins S3 171 176
    • (1999) Proteins , vol.3 , pp. 171-176
    • Simons, K.T.1    Bonneau, R.2    Ruczinski, I.3    Baker, D.4
  • 9
    • 0031940562 scopus 로고    scopus 로고
    • GENFOLD: A genetic algorithm for folding protein structures using NMR restraints
    • M. J. Bayley G. Jones P. Willett M. P. Williamson 1998 GENFOLD: A genetic algorithm for folding protein structures using NMR restraints Protein Science 7 491 499
    • (1998) Protein Science , vol.7 , pp. 491-499
    • Bayley, M.J.1    Jones, G.2    Willett, P.3    Williamson, M.P.4
  • 11
    • 30344479439 scopus 로고    scopus 로고
    • CASP6 data processing and automatic evaluation at the protein structure prediction center
    • A. Kryshtafovych M. Milostan L. Szajkowski D. Daniluk K. Fidelis 2005 CASP6 data processing and automatic evaluation at the protein structure prediction center Proteins S7 19 23
    • (2005) Proteins , vol.7 , pp. 19-23
    • Kryshtafovych, A.1    Milostan, M.2    Szajkowski, L.3    Daniluk, D.4    Fidelis, K.5
  • 13
    • 0032606104 scopus 로고    scopus 로고
    • RMS/coverage graphs: A qualitative method for comparing three-dimensional protein structure predictions
    • Suppl 3
    • T. J. Hubbard 1999 RMS/coverage graphs: a qualitative method for comparing three-dimensional protein structure predictions Proteins 37 Suppl 3 15 21
    • (1999) Proteins , vol.37 , pp. 15-21
    • Hubbard, T.J.1
  • 14
    • 0042622381 scopus 로고    scopus 로고
    • LGA-a method for finding 3D similarities in protein structures
    • A. Zemla 2003 LGA-a method for finding 3D similarities in protein structures Nucleic Acids Research 31 3370 3374
    • (2003) Nucleic Acids Research , vol.31 , pp. 3370-3374
    • Zemla, A.1
  • 15
    • 10844286440 scopus 로고    scopus 로고
    • Relationship between multiple sequence alignments and quality of protein comparative models
    • D. Cozzetto A. Tramontano 2005 Relationship between multiple sequence alignments and quality of protein comparative models Proteins 58 151 157
    • (2005) Proteins , vol.58 , pp. 151-157
    • Cozzetto, D.1    Tramontano, A.2
  • 16
    • 14044268036 scopus 로고    scopus 로고
    • Ten years of predictions.and counting
    • D. Cozzetto A. Tramontano 2005 Ten years of predictions...and counting The FEBS Journal 272 881 882
    • (2005) The FEBS Journal , vol.272 , pp. 881-882
    • Cozzetto, D.1    Tramontano, A.2
  • 17
    • 13844291273 scopus 로고    scopus 로고
    • Protein refinement: A new challenge for CASP in ts 10th anniversary
    • A. Valencia 2005 Protein refinement: A new challenge for CASP in ts 10th anniversary Bioinformatics 21 277 277
    • (2005) Bioinformatics , vol.21 , pp. 277-277
    • Valencia, A.1
  • 18
    • 36749059956 scopus 로고    scopus 로고
    • Assessment of CASP7 predictions in the high accuracy template-based modeling category
    • R. J. Read G. Chavali 2007 Assessment of CASP7 predictions in the high accuracy template-based modeling category Proteins 69 27 37
    • (2007) Proteins , vol.69 , pp. 27-37
    • Read, R.J.1    Chavali, G.2
  • 20
    • 33644874606 scopus 로고    scopus 로고
    • The SWISS-MODEL repository: New features and functionalities
    • J. Kopp T. Schwede 2006 The SWISS-MODEL repository: New features and functionalities Nucleic Acids Research 34 D315 D318
    • (2006) Nucleic Acids Research , vol.34
    • Kopp, J.1    Schwede, T.2
  • 24
    • 0027490731 scopus 로고
    • Recognition of errors in three-dimensional structures of proteins
    • M. J. Sippl 1993 Recognition of errors in three-dimensional structures of proteins Proteins 17 355 362
    • (1993) Proteins , vol.17 , pp. 355-362
    • Sippl, M.J.1
  • 25
    • 0030767485 scopus 로고    scopus 로고
    • VERIFY3D: Assessment of protein models with three-dimensional profiles
    • D. Eisenberg R. Luthy J. U. Bowie 1997 VERIFY3D: Assessment of protein models with three-dimensional profiles Methods in Enzymology 277 396 404
    • (1997) Methods in Enzymology , vol.277 , pp. 396-404
    • Eisenberg, D.1    Luthy, R.2    Bowie, J.U.3
  • 26
    • 36749043625 scopus 로고    scopus 로고
    • Assessment of predictions in the model quality assessment category
    • D. Cozzetto A. Kryshtafovych M. Ceriani A. Tramontano 2007 Assessment of predictions in the model quality assessment category Proteins 69 175 183
    • (2007) Proteins , vol.69 , pp. 175-183
    • Cozzetto, D.1    Kryshtafovych, A.2    Ceriani, M.3    Tramontano, A.4
  • 27
    • 36749049687 scopus 로고    scopus 로고
    • Prediction of global and local model quality in CASP7 using Pcons and ProQ
    • B. Wallner A. Elofsson 2007 Prediction of global and local model quality in CASP7 using Pcons and ProQ Proteins 69 184 193
    • (2007) Proteins , vol.69 , pp. 184-193
    • Wallner, B.1    Elofsson, A.2
  • 29
    • 0035103763 scopus 로고    scopus 로고
    • LiveBench-1: Continuous benchmarking of protein structure prediction servers
    • J. M. Bujnicki A. Elofsson D. Fischer L. Rychlewski 2001 LiveBench-1: Continuous benchmarking of protein structure prediction servers Protein Science 10 352 361
    • (2001) Protein Science , vol.10 , pp. 352-361
    • Bujnicki, J.M.1    Elofsson, A.2    Fischer, D.3    Rychlewski, L.4
  • 32
    • 27544504227 scopus 로고    scopus 로고
    • Evaluating the usefulness of protein structure models for molecular replacement
    • A. Giorgetti D. Raimondo A. E. Miele A. Tramontano 2005 Evaluating the usefulness of protein structure models for molecular replacement Bioinformatics 21 ii72 ii76
    • (2005) Bioinformatics , vol.21
    • Giorgetti, A.1    Raimondo, D.2    Miele, A.E.3    Tramontano, A.4
  • 33
    • 33846202561 scopus 로고    scopus 로고
    • Automatic procedure for using models of proteins in molecular replacement
    • D. Raimondo A. Giorgetti A. Giorgetti S. Bosi A. Tramontano 2007 Automatic procedure for using models of proteins in molecular replacement Proteins 66 689 696
    • (2007) Proteins , vol.66 , pp. 689-696
    • Raimondo, D.1    Giorgetti, A.2    Giorgetti, A.3    Bosi, S.4    Tramontano, A.5
  • 34
    • 36049029967 scopus 로고    scopus 로고
    • High-resolution structure prediction and the crystallographic phase problem
    • B. Qian S. Raman R. Das P. Bradley A. J. McCoy R. J. Read D. Baker 2007 High-resolution structure prediction and the crystallographic phase problem Nature 450 259 264
    • (2007) Nature , vol.450 , pp. 259-264
    • Qian, B.1    Raman, S.2    Das, R.3    Bradley, P.4    McCoy, A.J.5    Read, R.J.6    Baker, D.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.