메뉴 건너뛰기




Volumn 58, Issue 1, 2005, Pages 151-157

Relationship between multiple sequence alignments and quality of protein comparative models

Author keywords

CASP experiments; Comparative modeling; Multiple sequence alignment; Protein structure evolution

Indexed keywords

AMINO ACID; PROTEIN;

EID: 10844286440     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.20284     Document Type: Article
Times cited : (49)

References (25)
  • 1
    • 0022706389 scopus 로고
    • The relation between the divergence of sequence and structure in proteins
    • Chothia C, Lesk A. The relation between the divergence of sequence and structure in proteins. EMBO J 1986;5:823-826.
    • (1986) EMBO J , vol.5 , pp. 823-826
    • Chothia, C.1    Lesk, A.2
  • 3
    • 0030792253 scopus 로고    scopus 로고
    • SCOP: A structural classification of proteins database
    • Hubbard T, Murzin A, Brenner S, Chothia C. SCOP: a structural classification of proteins database. Nuc Acid Res 1997;25:236-239.
    • (1997) Nuc Acid Res , vol.25 , pp. 236-239
    • Hubbard, T.1    Murzin, A.2    Brenner, S.3    Chothia, C.4
  • 5
    • 0030628746 scopus 로고    scopus 로고
    • Extraction of well-fitting substructures: Root-mean-square deviation and the difference distance matrix
    • Lesk A. Extraction of well-fitting substructures: root-mean-square deviation and the difference distance matrix. Fold Des 1997;2:S12-S14.
    • (1997) Fold Des , vol.2
    • Lesk, A.1
  • 6
    • 0025997090 scopus 로고
    • A fast, unbiased comparison of protein structures by means of the Needleman-Wunsch algorithm
    • Rose J, Eisenmenger F. A fast, unbiased comparison of protein structures by means of the Needleman-Wunsch algorithm. J Mol Evol 1991;32:340-354.
    • (1991) J Mol Evol , vol.32 , pp. 340-354
    • Rose, J.1    Eisenmenger, F.2
  • 7
    • 0006733461 scopus 로고
    • A method for multiple superposition of structures
    • Shapiro A, Botha J, Pastore A, Lesk A. A method for multiple superposition of structures. Acta Crystallogr 1992;A48 (Pt 1):11-14.
    • (1992) Acta Crystallogr , vol.A48 , Issue.PART 1 , pp. 11-14
    • Shapiro, A.1    Botha, J.2    Pastore, A.3    Lesk, A.4
  • 8
    • 0028150923 scopus 로고
    • Multiple protein structure alignment
    • Taylor W, Flores T, Orengo C. Multiple protein structure alignment. Protein Sci 1994;3:1858-1870.
    • (1994) Protein Sci , vol.3 , pp. 1858-1870
    • Taylor, W.1    Flores, T.2    Orengo, C.3
  • 9
    • 0029057126 scopus 로고
    • Size-independent comparison of protein three-dimensional structures
    • Maiorov V, Crippen G. Size-independent comparison of protein three-dimensional structures. Proteins 1995;22:273-283.
    • (1995) Proteins , vol.22 , pp. 273-283
    • Maiorov, V.1    Crippen, G.2
  • 10
    • 0028173886 scopus 로고
    • Protein structure comparisons using a combination of a genetic algorithm, dynamic programming and least-squares minimization
    • May A, Johnson M. Protein structure comparisons using a combination of a genetic algorithm, dynamic programming and least-squares minimization. Protein Eng 1994;7:475-485.
    • (1994) Protein Eng , vol.7 , pp. 475-485
    • May, A.1    Johnson, M.2
  • 11
    • 0031717909 scopus 로고    scopus 로고
    • Homology modeling with low sequence identity
    • Tramontano A. Homology modeling with low sequence identity. Methods (San Diego, CA) 1998;14:293-300.
    • (1998) Methods (San Diego, CA) , vol.14 , pp. 293-300
    • Tramontano, A.1
  • 12
    • 0034062874 scopus 로고    scopus 로고
    • Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL
    • Teichmann SA, Chothia C, Church GM, Park J. Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL. Bioinformatics (Oxford, England) 2000;16:117-124.
    • (2000) Bioinformatics (Oxford, England) , vol.16 , pp. 117-124
    • Teichmann, S.A.1    Chothia, C.2    Church, G.M.3    Park, J.4
  • 13
    • 0031793928 scopus 로고    scopus 로고
    • Iterated profile searches with PSI-BLAST - A tool for iscovery in protein databases
    • Altschul SF, Koonin EV. Iterated profile searches with PSI-BLAST-a tool for iscovery in protein databases. Trends Biochem Sci 1998;23:444-447.
    • (1998) Trends Biochem Sci , vol.23 , pp. 444-447
    • Altschul, S.F.1    Koonin, E.V.2
  • 14
    • 84995046262 scopus 로고
    • A large-scale experiment to assess protein structure prediction methods
    • Moult J, Pedersen J, Judson R, Fidelis K. A large-scale experiment to assess protein structure prediction methods. Proteins 1995;23:ii-v.
    • (1995) Proteins , vol.23
    • Moult, J.1    Pedersen, J.2    Judson, R.3    Fidelis, K.4
  • 15
    • 0031297386 scopus 로고    scopus 로고
    • Critical assessment of methods of protein structure prediction (CASP): Round II
    • Moult J, Hubbard T, Bryant S, Fidelis K, Pedersen J. Critical assessment of methods of protein structure prediction (CASP): round II. Prot Suppl 1997;1:2-6.
    • (1997) Prot Suppl , vol.1 , pp. 2-6
    • Moult, J.1    Hubbard, T.2    Bryant, S.3    Fidelis, K.4    Pedersen, J.5
  • 16
    • 0032606039 scopus 로고    scopus 로고
    • Critical assessment of methods of protein structure prediction (CASP): Round III
    • Moult J, Hubbard T, Fidelis K, Pedersen J. Critical assessment of methods of protein structure prediction (CASP): round III. Prot Suppl 1999;3:2-6.
    • (1999) Prot Suppl , vol.3 , pp. 2-6
    • Moult, J.1    Hubbard, T.2    Fidelis, K.3    Pedersen, J.4
  • 17
    • 0035702809 scopus 로고    scopus 로고
    • Critical assessment of methods of protein structure prediction (CASP): Round IV
    • Moult J, Fidelis K, Zemla A, Hubbard, T. Critical assessment of methods of protein structure prediction (CASP): round IV. Prot Suppl 2001;5:2-6.
    • (2001) Prot Suppl , vol.5 , pp. 2-6
    • Moult, J.1    Fidelis, K.2    Zemla, A.3    Hubbard, T.4
  • 18
    • 0242267517 scopus 로고    scopus 로고
    • Critical assessment of methods of protein structure prediction (CASP)-round V
    • Moult JAZ, Fidelis K, Hubbard T. Critical assessment of methods of protein structure prediction (CASP)-round V. Prot Suppl 2003;6:334-339.
    • (2003) Prot Suppl , vol.6 , pp. 334-339
    • Moult, J.A.Z.1    Fidelis, K.2    Hubbard, T.3
  • 21
  • 22
    • 0042622381 scopus 로고    scopus 로고
    • LGA: A method for finding 3D similarities in protein structures
    • Zemla A. LGA: A method for finding 3D similarities in protein structures. Nucl Acid Res (Online) 2003;31:3370-3374.
    • (2003) Nucl Acid Res (Online) , vol.31 , pp. 3370-3374
    • Zemla, A.1
  • 23
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for fast and accurate multiple sequence alignment
    • Notredame C, Higgins DG, Heringa J. T-Coffee: a novel method for fast and accurate multiple sequence alignment. J Mol Biol 2000;302:205-217.
    • (2000) J Mol Biol , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 24
    • 2342423130 scopus 로고    scopus 로고
    • Quality of alignment comparison by COMPASS improves with inclusion of diverse confident homologs
    • Sadreyev RI, Grishin NV. Quality of alignment comparison by COMPASS improves with inclusion of diverse confident homologs. Bioinformatics 2004;20:818-828.
    • (2004) Bioinformatics , vol.20 , pp. 818-828
    • Sadreyev, R.I.1    Grishin, N.V.2
  • 25
    • 0242330730 scopus 로고    scopus 로고
    • Assessment of homology-based predictions in CASP5
    • Tramontano A, Morea V. Assessment of homology-based predictions in CASP5. Prot Suppl 2003;53(6):352-368.
    • (2003) Prot Suppl , vol.53 , Issue.6 , pp. 352-368
    • Tramontano, A.1    Morea, V.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.