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52049096263
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note
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A sub-set of a small-molecule X-ray crystal structure database (Allen, F.; Acta Cryst., 2002, B58, 380) was converted into Catalyst format (Accelrys Inc.) and searched using a 3D pharmacophore query built using the X-ray complex of 2 in p38α. Molecules hitting the query were processed to retain only the subgraphs containing the query features. These were converted into a 2D SMARTS representation (Daylight Chemical Systems Inc.) with generic atoms and bonds, with the exception of the hinge H-bond acceptor atom and an attachment Br or I atom replacing the tolyl ring of the query. The SMARTS queries were then used to search the GSK database for available reagents, which were examined and filtered by eye.
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12
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52049111072
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note
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3a.
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13
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52049118402
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note
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3a The final R-factor achieved for each complex was 17.2% for compound 6a and 16.9% for compound 19b. The coordinates have been deposited in the PDB as entries 3E92 and 3E93. Figures were produced using Pymol (DeLano, W.L., DeLano Scientific, Palo Alto CA, USA. http://www.pymol.org).
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14
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37549041341
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Somers, D.8
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52049115009
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note
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Pharmacokinetic parameters derived from a composite blood sampling profile in male Lewis rats were determined following intravenous (iv) and oral (po) administration at 1 mg/kg. Compound was administered as a solution in 10% DMSO/70% PEG200/20% water. Blood was collected over a 12 h time period. Plasma preparation, sample analysis and data generation were carried out as described in Ref. 3a.
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