Recovery from Cucurbit leaf crumple virus (Family Geminiviridae, Genus Begomovirus) infection is an adaptive antiviral response associated with changes in viral small RNAs

Phytopathology

Volumn 98, Issue 9, 2008, Pages 1029-1037

  Hagen, C ^a   Rojas, M R ^a   Kon, T ^a   Gilbertson, R L ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIVIRUS AGENT; PRIMER DNA; VIRUS DNA; VIRUS RNA;

ARTICLE; BEAN; BEGOMOVIRUS; DRUG EFFECT; GENE SILENCING; GENETICS; MELON; PATHOGENICITY; PLANT DISEASE; PLANT LEAF; RESTRICTION MAPPING; UNITED STATES; VIROLOGY; VIRUS GENE;

ANTIVIRAL AGENTS; BEGOMOVIRUS; CUCUMIS; DNA PRIMERS; DNA, VIRAL; GENE SILENCING; GENES, VIRAL; PHASEOLUS; PLANT DISEASES; PLANT LEAVES; RESTRICTION MAPPING; RNA, VIRAL; UNITED STATES;

BEGOMOVIRUS; CITRULLUS LANATUS; CITRULLUS LANATUS VAR. LANATUS; CUCUMBER MOSAIC VIRUS; CUCUMIS MELO; CUCURBIT LEAF CRUMPLE VIRUS; CUCURBITA PEPO VAR. MELOPEPO; GEMINIVIRIDAE; RNA VIRUSES;

EID: 51849165253     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-98-9-1029     Document Type: Article

References (49)

1. Akbergenov, R., Si-Ammour, A., Blevins, T., Amin, I., Kutter, C., Vanderschuren, H., Zhang, P., Gruissem, W., Meins, F., Jr., Hohn, T., and Pooggin, M. M. 2006. Molecular characterization of geminivirus-derived small RNAs in different plant species. Nucleic Acids Res. 34:462-471.
2. Baulcombe, D. 2004. RNA silencing in plants. Nature 431:356-363.
3. Bender, J. 2004. DNA methylation and epigenetics. Annu. Rev. Plant Biol. 55:41-68.
4. Bernstein, E., Kim, S. Y., Carmell, M. A., Murchison, E. P., Alcorn, H., Li, M. Z., Mills, A. A., Elledge, S. J., Anderson, K. V., and Hannon, G. J. 2003. Dicer is essential for mouse development. Nat. Genet. 35:215-217.
5. Blevins, T., Rajeswaran, R., Shivaprasad, P. V., Beknazariants, D., Si-Ammour, A., Park, H. S., Vazquez, F., Robertson, D., Meins, F., Jr., Hohn, T., and Pooggin, M. M. 2006. Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing. Nucleic Acids Res. 34:6233-6246.
6. Brigneti, G., Voinnet, O., Li, W. X., Ji, L. H., Ding, S. W., and Baulcombe, D. C. 1998. Viral pathogenicity determinants are suppressors of transgene silencing in Nicotiana benthamiana. EMBO J. 17:6739-6746.
7. Brough, C. L., Gardiner, W. E., Inamdar, N. M., Zhang, X. Y., Ehrlich, M., and Bisaro, D. M. 1992. DNA methylation inhibits propagation of DNA in transfected protoplasts. Plant Mol. Biol. 18:703-712.
8. Brown, J. K., Idris, A. M., Alteri, C., and Stenger, D. C. 2002. Emergence of a new cucurbit-infecting begomovirus species capable of forming viable reassortants with related viruses in the Squash leaf curl virus cluster. Phytopathology 92:734-742.
9. Brown, J. K., Idris, A. M., Ostrow, K. M., Goldberg, N., French, R., and Stenger, D. C. 2005. Genetic and phenotypic variation of the Pepper golden mosaic virus complex. Phytopathology 95:1217-1224.
10. Carmell, M. A., and Hannon, G. J. 2004. RNase III enzymes and the initiation of gene silencing. Nat. Struct. Mol. Biol. 11:214-218.
11. Carrillo-Tripp, J., Lozoya-Gloria, E., and Rivera-Bustamante, R. F. 2007. Symptom remission and specific resistance of pepper plants after infection by Pepper golden mosaic virus. Phytopathology 97:51-59.
12. Chapman, E. J., Prokhnevsky, A. I., Gopinath, K., Dolja, V. V., and Carrington, J. C. 2004. Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step. Genes Dev. 18:1179-1186.
13. Chellappan, P., Masona, M. V., Vanitharani, R., Taylor, N. J., and Fauquet, C. M. 2004. Broad spectrum resistance to ssDNA viruses associated with transgene-induced gene silencing in cassava. Plant Mol. Biol. 56:601-611.
14. Covey, S. N., Al-Kaff, N. S., Langara, A., and Turner, D. S. 1997. Plants combat infection by gene silencing. Nature 385:781-782.
15. Dellaporta, S. L., Wood, J., and Hicks, J. B. 1983. A plant DNA minipreparation: Version II. Plant Mol. Biol. Rep. 1:19-21.
16. Ermak, G., Paszkowski, U., Wohlmuth, M., Scheid, O. M., and Paszkowski, J. 1993. Cytosine methylation inhibits replication of African cassava mosaic virus by 2 distinct mechanisms. Nucleic Acids Res. 21:3445-3450.
17. Gleave, A. P. 1992. A versatile binary vector system with a T-DNA organizational-structure conducive to efficient integration of cloned DNA into the plant genome. Plant Mol. Biol. 20:1203-1207.
18. Gupta, A., Gartner, J. J., Sethupathy, P., Hatzigeorgiou, A. G., and Fraser, N. W. 2006. Anti-apoptotic function of a microRNA encoded by the HSV-1 latency-associated transcript. Nature 442:82-85.
19. Guzman, P., Sudarshana, M. R., Seo, Y. S., and Rojas, M., Natwick, E., Turini, Mayberry, K., and Gilbertson, R. L. 2000. A new bipartite geminivirus (Begomovirus) causing leaf curl and crumpling in cucurbits in the Imperial Valley of California. Plant Dis. 84:488.
20. Hagen, C., Rojas, M. R., Sudarshana, M. R., Xoconostle-Cazares, B., Natwick, E., Turini, T. A., and Gilbertson, R. L. 2008. Biology and molecular characterization of Cucurbit leaf crumple virus, an emergent cucurbit-infecting begomovirus in the Imperial Valley of California. Plant Dis. 92:781-793.
21. Hamilton, A., Voinnet, O., Chappell, L., and Baulcombe, D. 2002. Two classes of short interfering RNA in RNA silencing. EMBO J. 21:4671-4679.
22. Hammond, S. M., Boettcher, S., Caudy, A. A., Kobayashi, R., and Hannon, G. J. 2001. Argonaute2, a link between genetic and biochemical analyses of RNAi. Science 293:1146-1150.
23. Hannon, G. J. 2002. RNA interference. Nature 418:244-251.
24. Helliwell, C. A., and Waterhouse, P. M. 2005. Constructs and methods for hairpin RNA-mediated gene silencing in plants. Methods Enzymol. 392:24-35.
25. Hernandez, N. A., Sudarshana, M. R., Guzman, P., and Gilbertson, R. L. 2001. Generation and characterization of infectious clones of Cucurbit leaf crumple virus, a new bipartite geminivirus from the Imperial Valley of California. (Abstr.) Phytopathology 91(suppl.):S35.
26. Hou, Y. M., and Gilbertson, R. L. 1996. Increased pathogenicity in a pseudorecombinant bipartite geminivirus correlates with intermolecular recombination. J. Virol. 70:5430-5436.
27. Hou, Y. M., Paplomatas, E. J., and Gilbertson, R. L. 1998. Host adaptation and replication properties of two bipartite geminiviruses and their pseudorecombinants. Mol. Plant-Microbe Interact. 11:208-217.
28. Jones, P. A. 1999. The DNA methylation paradox. Trends Genet. 15:34-37.
29. Lucy, A. P., Guo, H. S., Li, W. X., and Ding, S. W. 2000. Suppression of post-transcriptional gene silencing by a plant viral protein localized in the nucleus. EMBO J. 19:1672-1680.
30. Mathieu, O., and Bender, J. 2004. RNA-directed DNA methylation. J. Cell Sci. 117:4881-4888.
31. Paplomatas, E. J., Patel, V. P., Hou, Y. M., Noueiry, A. O., and Gilbertson, R. L. 1994. Molecular characterization of a new sap-transmissible bipartite genome geminivirus infecting tomatoes in Mexico. Phytopathology 84:1215-1224.
32. Peragine, A., Yoshikawa, M., Wu, G., Albrecht, H. L., and Poethig, R. S. 2004. SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis. Genes Dev. 18:2368-2379.
33. Pollack, Y., Stein, R., Razin, A., and Cedar, H. 1980. Methylation of foreign DNA sequences in eukaryotic cells. Proc. Natl. Acad. Sci. USA 77:6463-6467.
34. Ratcliff, F., Harrison, B. D., and Baulcombe, D. C. 1997. A similarity between viral defense and gene silencing in plants. Science 276:1558-1560.
35. Rodman, M. K., Yadav, N. S., and Artus, N. N. 2002. Progression of geminivirus-induced transgene silencing is associated with transgene methylation. New Phytol. 155:461-468.
36. Sambrook, J., Fritsch, E. F., and Maniatis, T. 1989. Molecular cloning: A laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
37. Saumet, A., and Lecellier, C. H. 2006. Anti-viral RNA silencing: Do we look like plants? Published online. Retrovirology 3: doi:10.1186/1742-4690-3-3.
38. Seemanpillai, M., Dry, I., Randles, J., and Rezaian, A. 2003. Transcriptional silencing of geminiviral promoter-driven transgenes following homologous virus infection. Mol. Plant-Microbe Interact. 16:429-438.
39. Seo, Y. S., Rojas, M. R., Lee, J. Y., Lee, S. W., Jeon, J. S., Ronald, P., Lucas, W. J., and Gilbertson, R. L. 2006. A viral resistance gene from common bean functions across plant families and is up-regulated in a non-virus-specific manner. Proc. Natl. Acad. Sci. USA 103:11856-11861.
40. Sunkar, R., and Zhu, J. K. 2004. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 16:2001-2019.
41. Vanitharani, R., Chellappan, P., and Fauquet, C. M. 2005. Geminiviruses and RNA silencing. Trends Plant Sci. 10:144-151.
42. Vaucheret, H. 2006. Post-transcriptional small RNA pathways in plants: mechanisms and regulations. Genes Dev. 20:759-771.
43. Voinnet, O. 2001. RNA silencing as a plant immune system against viruses. Trends Genet. 17:449-459.
44. Wang, M. B., Bian, X. Y., Wu, L. M., Liu, L. X., Smith, N. A., Isenegger, D., Wu, R. M., Masuta, C., Vance, V. B., Watson, J. M., Rezaian, A., Dennis, E. S., and Waterhouse, P. M. 2004. On the role of RNA silencing in the pathogenicity and evolution of viroids and viral satellites. Proc. Natl. Acad. Sci. USA 101:3275-3280.
45. Wassenegger, M., Heimes, S., Riedel, L., and Sanger, H. L. 1994. RNA directed de novo methylation of genomic sequences in plants. Cell 76:567-576.
46. Wesley, S. V., Helliwell, C. A., Smith, N. A., Wang, M. B., Rouse, D. T., Liu, Q., Gooding, P. S., Singh, S. P., Abbott, D., Stoutjesdijk, P. A., Robinson, S. P., Gleave, A. P., Green, A. G., and Waterhouse, P. M. 2001. Construct design for efficient, effective and high-throughput gene silencing in plants. Plant J. 27:581-590.
47. Yoo, B. C., Kragler, F., Varkonyi-Gasic, E., Haywood, V., Archer-Evans, S., Lee, Y. M., Lough, T. J., and Lucas, W. J. 2004. A systemic small RNA signaling system in plants. Plant Cell 16:1979-2000.
48. Zamore, P. D. 2002. A surveillance system regulates selective entry of RNA into the shoot apex: Ancient pathways programmed by small RNAs. Science 296:1265-1269.
49. Zhang, X., Yuan, Y. R., Pei, Y., Lin, S. S., Tuschl, T., Patel, J. P., and Chua, N. H. 2006. Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense. Genes Dev. 20:3255-3268.