Characterization of two thermostable cyanobacterial phytochromes reveals global movements in the chromophore-binding domain during photoconversion

Journal of Biological Chemistry

Volumn 283, Issue 30, 2008, Pages 21251-21256

  Ulijasz, Andrew T ^a   Cornilescu, Gabriel ^a   Von Stetten, David ^b   Kaminski, Steve ^b   Mroginski, Maria Andrea ^b   Zhang, Junrui ^a   Bhaya, Devaki ^c   Hildebrandt, Peter ^b   Vierstra, Richard D ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b TECHNISCHE UNIVERSITÄT BERLIN   (Germany)

^c GEOPHYSICAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BEFORE AND AFTER; BINDING DOMAINS; BINDING POCKETS; CYANOBACTERIAL PHYTOCHROMES; DO-MAINS; LIGHT PERCEPTIONS; NMR SPECTROSCOPIES; PHOTOCYCLE; PHYCOCYANOBILIN; PROTONATED; PYRROLE RINGS; RED LIGHTS; RESONANCE RAMAN; REVERSIBLE SWITCHES; SMALL SIZES; SYNECHOCOCCUS;

AMINES; AMINO ACIDS; NITROGEN COMPOUNDS; NUCLEAR MAGNETIC RESONANCE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; ORGANIC ACIDS; PHOTOEXCITATION; THREE DIMENSIONAL;

CHROMOPHORES;

ADENYLATE CYCLASE; AMINO ACID; CYCLIC GMP; ENZYME; MONOMER; NITROGEN; PHOSPHODIESTERASE; PHYCOBILIN; PHYCOCYANOBILIN; PHYTOCHROME; PYRROLE DERIVATIVE; RED FLUORESCENT PROTEIN; SYA CPH1 ENZYME; SYB CPH1 ENZYME; UNCLASSIFIED DRUG; RECOMBINANT PROTEIN;

ABSORPTION; AMINO TERMINAL SEQUENCE; ARTICLE; BINDING AFFINITY; CHROMATOPHORE; CYANOBACTERIUM; IRRADIATION; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; NUCLEOTIDE SEQUENCE; PHOTOCHEMISTRY; PRIORITY JOURNAL; PROTON TRANSPORT; RAMAN SPECTROMETRY; SYNECHOCOCCUS; THERMOPHILIC BACTERIUM; THERMOSTABILITY; AMINO ACID SEQUENCE; BIOLOGICAL MODEL; CHEMISTRY; LIGHT; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; PROTEIN BINDING; PROTEIN TERTIARY STRUCTURE; SEQUENCE HOMOLOGY; SPECTROFLUOROMETRY; ULTRAVIOLET SPECTROPHOTOMETRY;

CYANOBACTERIA; SYNECHOCOCCUS SP.;

AMINO ACID SEQUENCE; CYANOBACTERIA; LIGHT; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; PHYTOCHROME; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; SPECTROMETRY, FLUORESCENCE; SPECTROPHOTOMETRY, ULTRAVIOLET; SPECTRUM ANALYSIS, RAMAN; SYNECHOCOCCUS;

EID: 51049115356     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M801592200     Document Type: Article

References (76)

1. Quail, P. H. (2002) Nat. Rev. Mol. Cell Biol. 3, 85-93
2. Rockwell, N. C., Su, Y. S., and Lagarias, J. C. (2006) Annu. Rev. Plant. Biol. 57, 837-858
3. Vierstra, R. D., and Karniol, B. (2005) in Handbook of Photosensory Receptors (Briggs, W. R., and Spudich, J. L., eds) pp. 171-196, Wiley-VCH Press, Weinheim, Germany
4. Smith, H. (1995) Annu. Rev. Plant Physiol. Plant Mol. Biol. 46, 269-315
5. Karniol, B., and Vierstra, R. D. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 2807-2812
6. Giraud, E., Fardoux, J., Fourrier, N., Hannibal, L., Genty, B., Bouyer, P., Dreyfus, B., and Vermeglio, A. (2002) Nature 417, 202-205
7. Giraud, E., Zappa, S., Vuillet, L., Adriano, J. M., Hannibal, L., Fardoux, J., Berthomieu, C., Bouyer, P., Pignol, D., and Vermeglio, A. (2005) J. Biol. Chem. 280, 32389-32397
8. Bhoo, S. H., Davis, S. J., Walker, J., Karniol, B., and Vierstra, R. D. (2001) Nature 414, 776-779
9. Lamparter, T., Michael, N., Caspani, O., Miyata, T., Shirai, K., and Inomata, K. (2003) J. Biol. Chem. 278, 33786-33792
10. Wagner, J. R., Brunzelle, J. S., Forest, K. T., and Vierstra, R. D. (2005) Nature 438, 325-331
11. Lamparter, T., Mittmann, F., Gärtner, W., Börner, T., Hartmann, E., and Hughes, J. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 11792-11797
12. Yeh, K. C., Wu, S. H., Murphy, J. T., and Lagarias, J. C. (1997) Science 277, 1505-1508
13. Wagner, J. R., Zhang, J., Brunzelle, J. S., Vierstra, R. D., and Forest, K. T. (2007) J. Biol. Chem. 282, 12298-12309
14. Wu, S. H., and Lagarias, J. C. (2000) Biochemistry 39, 13487-13495
15. Karniol, B., Wagner, J. R., Walker, J. M., and Vierstra, R. D. (2005) Biochem. J. 392, 103-116
16. Hahn, J., Strauss, H. M., Landgraf, F. T., Gimenez, H. F., Lochnit, G., Schmieder, P., and Hughes, J. (2006) FEBS J. 273, 1415-1429
17. Fischer, A. J., and Lagarias, J. C. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 17334-17339
18. von Stetten, D., Seibeck, S., Michael, N., Scheerer, P., Mroginski, M. A., Murgida, D. H., Krauss, N., Heyn, M. P., Hildebrandt, P., Borucki, B., and Lamparter, T. (2007) J. Biol. Chem. 282, 2116-2123
19. Wagner, J. R., Zhang, Z., von Stetten, D., Gunter, M., Murgida, D. H., Mroginski, M. A., Walker, J. M., Forest, K. T., Hildebrandt, P., and Vierstra, R. D. (2008) J. Biol. Chem. 283, 12212-12226
20. Rüdiger, W., Thümmler, F., Cmiel, E., and Schneider, S. (1983) Proc. Natl. Acad. Sci. U. S. A. 80, 6244-6248
21. Mizutani, Y., Tokutomi, S., and Kitagawa, T. (1994) Biochemistry 33, 153-158
22. Andel, F., III, Lagarias, J. C., and Mathies, R. A. (1996) Biochemistry 35, 15997-16008
23. Foerstendorf, H., Benda, C., Gärtner, W., Storf, M., Scheer, H., and Siebert, F. (2001) Biochemistry 40, 14952-14959
24. Borucki, B., von Stetten, D., Seibeck, S., Lamparter, T., Michael, N., Mroginski, M. A., Otto, H., Murgida, D. H., Heyn, M. P., and Hildebrandt, P. (2005) J. Biol. Chem. 280, 34358-34364
25. Lagarias, J. C., and Mercurio, F. M. (1985) J. Biol. Chem. 260, 2415-2423
26. Noack, S., Michael, N., Rosen, R., and Lamparter, T. (2007) Biochemistry 46, 4164-4176
27. Grimm, R., Eckerskorn, C., Lottspeich, F., Zenger, C., and Rüdiger, W. (1988) Planta 174, 396-401
28. Quail, P. H. (1997) Plant Cell Environ. 20, 657-665
29. Lapko, V. N., Jiang, X. Y., Smith, D. L., and Song, P. S. (1998) Biochemistry 37, 12526-12535
30. Esteban, B., Carrascal, M., Abian, J., and Lamparter, T. (2005) Biochemistry 44, 450-461
31. Natori, C., Kim, J. I., Bhoo, S. H., Han, Y. J., Hanzawa, H., Furuya, M., and Song, P. S. (2007) Photochem. Photobiol. Sci. 6, 83-89
32. Strauss, H. M., Hughes, J., and Schmieder, P. (2005) Biochemistry 44, 8244-8250
33. Rohmer, T., Strauss, H., Hughes, J., de Groot, H., Gärtner, W., Schmieder, P., and Matysik, J. (2006) J. Phys. Chem. B. 110, 20580-20585
34. Hahn, J., Kuhne, R., and Schmieder, P. (2007) ChemBioChem 8, 2249-2255
35. Yu, H. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 332-334
36. Riek, R., Wider, G., Pervushin, K., and Wüthrich, K. (1999) Proc. Natl. Acad. Sci. U. S. A., 96, 4918-4923
37. Ulijasz, A. T., Grenader, A., and Weisblum, B. (1996) J. Bacteriol. 178, 6305-6309
38. Gambetta, G. A., and Lagarias, J. C. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 10566-10571
39. Wang, L., Elliott, M., and Elliott, T. (1999) J. Bacteriol. 181, 1211-1219
40. Venters, R. A., Calderone, T. L., Spicer, L. D., and Fierke, C. A. (1991) Biochemistry 30, 4491-4494
41. Collins, B. K., Tomanicek, S. J., Lyamicheva, N., Kaiser, M. W., and Mueser, T. C. (2004) Acta Crystallogr. Sect. D. Biol. Crystallogr. 60, 1674-1678
42. Scheer, H. (1984) in Techniques in Photomorphogenesis (Smith, H. H., and Holmes, M. G., eds) pp. 227-256, Academic Press, New York
43. Kneip, C., Hildebrandt, P., Schlamann, W., Braslavsky, S. E., Mark, F., and Schaffner, K. (1999) Biochemistry 38, 15185-15192
44. Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) J. Biomol. NMR 6, 277-293
45. Allewalt, J. P., Bateson, M. M., Revsbech, N. P., Slack, K., and Ward, D. M. (2006) Appl. Environ. Microbiol. 72, 544-550
46. Bhaya, D., Grossman, A. R., Steunou, A. S., Khuri, N., Cohan, F. M., Hamamura, N., Melendrez, M. C., Bateson, M. M., Ward, D. M., and Heidelberg, J. F. (2007) ISME J. 1, 703-713
47. Park, C. M., Kim, J. I., Yang, S. S., Kang, J. G., Kang, J. H., Shim, J. Y., Chung, Y. H., Park, Y. M., and Song, P. S. (2000) Biochemistry 39, 10840-10847
48. Ishizuka, T., Narikawa, R., Kohchi, T., Katayama, M., and Ikeuchi, M. (2007) Plant Cell Physiol. 48, 1385-1390
49. Bhaya, D., Takahashi, A., and Grossman, A. R. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 7540-7545
50. Kilian, O., Steunou, A. S., Fazeli, F., Bailey, S., Bhaya, D., and Grossman, A. R. (2007) Appl. Environ. Microbiol. 73, 4268-4278
51. Park, C. M., Shim, J. Y., Yang, S. S., Kang, J. G., Kim, J. I., Luka, Z., and Song, P. S. (2000) Biochemistry 39, 6349-6356
52. Fischer, A. J., Rockwell, N. C., Jang, A. Y., Ernst, L. A., Waggoner, A. S., Duan, Y., Lei, H., and Lagarias, J. C. (2005) Biochemistry 44, 15203-15215
53. Yang, X., Stojkovic, E. M., Kuk, J., and Moffat, K. (2007) Proc. Natl. Acad. Sci. U. S. A. 104, 12571-12576
54. Stock, A. M., Robinson, V. L., and Goudreau, P. N. (2000) Annu. Rev. Biochem. 69, 183-215
55. Wexler, M., Sargent, F., Jack, R. L., Stanley, N. R., Bogsch, E. G., Robinson, C., Berks, B. C., and Palmer, T. (2000) J. Biol. Chem. 275, 16717-16722
56. Davis, S. J., Vener, A. V., and Vierstra, R. D. (1999) Science 286, 2517-2520
57. Strauss, H. M., Schmieder, P., and Hughes, J. (2005) FEBS Lett. 579, 3970-3974
58. Cherry, J. R., Hondred, D., Walker, J. M., Keller, J. M., Hershey, H. P., and Vierstra, R. D. (1993) Plant Cell 5, 565-575
59. Edgerton, M. D., and Jones, A. M. (1992) Plant Cell 4, 161-171
60. Blumenstein, A., Vienken, K., Tasler, R., Purschwitz, J., Veith, D., Frankenberg-Dinkel, N., and Fischer, R. (2005) Curr. Biol. 15, 1833-1838
61. Shlyk-Kerner, O., Samish, I., Kaftan, D., Holland, N., Sai, P. S., Kless, H., and Scherz, A. (2006) Nature 442, 827-830
62. Mroginski, M. A., Murgida, D. H., and Hildebrandt, P. (2007) Acc. Chem. Res. 40, 258-266
63. Murgida, D. H., von Stetten, D., Hildebrandt, P., Schwinte, P., Siebert, F., Sharda, S., Gärtner, W., and Mroginski, M. A. (2007) Biophys. J. 93, 2410-2417
64. Fodor, S. P., Lagarias, J. C., and Mathies, R. A. (1990) Biochemistry 29, 11141-11146
65. Limbach, H. H., Hennig, J., Kendrick, R., and Yannoni, C. S. (1984) J. Am. Chem. Soc. 106, 4059-4060
66. Falk, H. (1989) The Chemistry of Linear Oligopyrroles and Bile Pigments, Springer-Verlag, New York
67. Rivera, M., and Walker, F. A. (1995) Anal. Biochem. 230, 295-302
68. Scheerer, P., Michael, N., Park, J. H., Noack, S., Forster, C., Hammam, M. A., Inomata, K., Choe, H. W., Lamparter, T., and Krauss, N. (2006) J. Struct. Biol. 153, 97-102
69. von Stetten, D., Gunther, M., Kaminski, S., Scherer, P., Krauss, N., Lamparter, T., Forest, K. T., Vierstra, R. D., Gärtner, W., Murgida, D. H., Mroginski, M. A., and Hildebrandt, P. (2008) Angew. Chem., in press
70. Li, X., Zhang, G., Ngo, N., Zhao, X., Kain, S. R., and Huang, C. C. (1997) J. Biol. Chem. 272, 28545-28549
71. van Thor, J. J., Mackeen, M., Kuprov, I., Dwek, R. A., and Wormald, M. R. (2006) Biophys. J. 91, 1811-1822
72. Mroginski, M. A., Murgida, D. H., von Stetten, D., Kneip, C., Mark, F., and Hildebrandt, P. (2004) J. Am. Chem. Soc. 126, 16734-16735
73. Inomata, K., Hammam, M. A. S., Kinoshita, H., Murata, Y., Khawn, H., Noack, S., Michael, N., and Lamparter, T. (2005) J. Biol. Chem. 280, 24491-24497
74. Miller, A. E., Fischer, A. J., Laurence, T., Hollars, C. W., Saykally, R. J., Lagarias, J. C., and Huser, T. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 11136-11141
75. Remberg, A., Lindner, I., Lamparter, T., Hughes, J., Kneip, C., Hildebrandt, P., Braslavsky, S. E., Gärtner, W., and Schaffner, K. (1997) Biochemistry 36, 13389-13395
76. Karniol, B., and Vierstra, R. D. (2004) J. Bacteriol. 186, 445-453