Differential interactions of phytochrome A (Pr vs. Pfr) with monoclonal antibodies probed by a surface plasmon resonance technique

Photochemical and Photobiological Sciences

Volumn 6, Issue 1, 2007, Pages 83-89

  Natori, Chihoko ^a   Kim, Jeong Il ^b,c   Bhoo, Seong Hee ^d   Han, Yun Jeong ^b,c   Hanzawa, Hiroko ^a   Furuya, Masaki ^a   Song, Pill Soon ^c,e  

^a HITACHI LTD   (Japan)

^b Chonnam National University   (South Korea)

^c Gyeongsang National University   (South Korea)

^d Kyung Hee University   (South Korea)

^e Jeju National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; CARBOXYMETHYLDEXTRAN; EPITOPE; MONOCLONAL ANTIBODY; PHYTOCHROME A;

AMINO TERMINAL SEQUENCE; ARTICLE; BIOSENSOR; CARBOXY TERMINAL SEQUENCE; NONHUMAN; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; SURFACE PLASMON RESONANCE;

EID: 33845970912     PISSN: 1474905X     EISSN: 14749092     Source Type: Journal    
DOI: 10.1039/b611077k     Document Type: Article

References (39)

1. M. Chen J. Chory C. Fankhauser Light signal transduction in higher plants Annu. Rev. Genet. 2004 38 87-117.
2. H. Smith Phytochromes and light signal perception by plants - an emerging synthesis Nature 2000 407 585-591.
3. C. Fankhauser The phytochromes, a family of red/far-red absorbing photoreceptors J. Biol. Chem. 2001 276 11453-11456.
4. C. Lin D. Shalitin Cryptochrome structure and signal transduction Annu. Rev. Plant Biol. 2003 54 469-496.
5. W. R. Briggs J. M. Christie Phototropins 1 and 2: versatile plant blue-light receptors Trends Plant Sci. 2002 7 204-210.
6. N. C. Rockwell Y. S. Su J. C. Lagarias Phytochrome structure and signaling mechanisms Annu. Rev. Plant Biol. 2006 57 837-858.
7. P. H. Quail Phytochrome photosensory signaling networks Nat. Rev. Mol. Cell Biol. 2002 3 85-93.
8. C. M. Park S. H. Bhoo P.-S. Song Inter-domain crosstalk in the phytochrome molecules Semin. Cell Dev. Biol. 2000 11 449-456.
9. H. Wang X.-W. Deng Dissecting the phytochrome A-dependent signaling network in higher plants Trends Plant Sci. 2003 8 172-178.
10. M. Ni J. M. Tepperman P. H. Quail PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein Cell 1998 95 657-667.
11. Y. Zhu J. M. Tepperman C. D. Fairchild P. H. Quail Phytochrome B binds with greater apparent affinity than phytochrome A to the basic helix-loop-helix factor PIF3 in a reaction requiring the PAS domain of PIF3 Proc. Natl. Acad. Sci. U. S. A. 2000 97 13419-13424.
12. J. Kim H. Yi G. Choi B. Shin P.-S. Song G. Choi Functional characterization of phytochrome interacting factor 3 in phytochrome-mediated light signal transduction Plant Cell 2003 15 2399-2407.
13. G. Choi H. Yi Y.-K. Kwon M.-S. Soh B. Shin Z. Luka T.-R. Hahn P.-S. Song Phytochrome signaling is mediated through nucleoside diphosphate kinase 2 Nature 1999 401 610-613.
14. Y. Shen J.-I. Kim P.-S. Song NDPK2 as a signal transducer in the phytochrome-mediated light signaling J. Biol. Chem. 2005 280 5740-5749.
15. C. Fankhauser K. C. Yeh J. C. Lagarias H. Zhang T. D. Elich J. Chory PKS1, a substrate phosphorylated by phytochrome that modulates light signaling in Arabidopsis Science 1999 284 1539-1541.
16. J. S. Ryu J.-I. Kim T. Kunkel B. C. Kim D. S. Cho S. H. Hong S.-H. Kim A. P. Fernndez Y. Kim J. M. Alonso J. R. Ecker F. Nagy P. O. Lim P.-S. Song E. Schäfer H. G. Nam Phytochrome-specific type 5 phosphatase controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer Cell 2005 120 395-406.
17. E. Schäfer C. Bowler Phytochrome-mediated photoperception and signal transduction in higher plants EMBO Rep. 2002 3 1042-1048.
18. J. M. McDonnell Surface plasmon resonance: towards an understanding of the mechanisms of biological molecular recognition Curr. Opin. Chem. Biol. 2001 5 572-577.
19. W. M. Mullet E. P. C. Lai J. M. Yeung Surface plasmon resonance-based immunoassays Methods 2000 22 77-91.
20. P. R. Edwards C. H. Maule R. J. Leatherbarrow D. J. Winzor Second-order kinetic analysis of IAsys biosensor data: its use and applicability Anal. Biochem. 1998 263 1-12.
21. K. Tomizawa N. Ito Y. Komeda T. Q. P. Uyeda K. Takio M. Furuya Characterization and intracellular distribution of pea phytochrome I polypeptides expressed in E. coli Plant Cell Physiol. 1999 32 95-102.
22. H. Abe H. Handa Y. Hogi T. Fukazawa Efficient usage of a galactose-inducible expression vector for the production of heterologous protein in yeast Agric. Biol. Chem. 1991 52 2035-2041.
23. L. Deforce K. Tomizawa N. Ito D. Farrens P.-S. Song M. Furuya In vitro assembly of apophytochrome and apophytochrome deletion mutants expressed in yeast with phycocyanobilin Proc. Natl. Acad. Sci. U. S. A. 1991 88 10392-10396.
24. J.-I. Kim Y. Shen Y.-J. Han D. Kirchenbauer J.-E. Park M.-S. Soh F. Nagy E. Schäfer P.-S. Song Phytochrome phosphorylation modulates light signaling by influencing the protein–protein interaction Plant Cell 2004 16 2629-2640.
25. V. N. Lapko P.-S. Song A simple and improved method of isolation and purification for native oat phytochrome Photochem. Photobiol. 1995 62 194-198.
26. A. Nagatani K. T. Yamamoto M. Furuya T. Fukumoto A. Yamashita Production and characterization of monoclonal antibodies which distinguish different surface structures of pea (Pisum sativum cv. Alaska) phytochrome Plant Cell Physiol. 1984 25 1059-1068.
27. A. Nagatani, P. J. Lumsden, A. Konomi and H. Abe, Application of monoclonal antibodies to phytochrome studies, in Phytochrome and photoregulation in plants, ed. M. Furuya, Academic Press, 1987, pp. 95–114.
28. P. J. Lumsden K. T. Yamamoto A. Nagatani M. Furuya Effect of monoclonal antibodies on the in vitro Pfr dark reversion of pea phytochrome Plant Cell Physiol. 1985 26 1313-1322.
29. T. Shinomura A. Nagatani H. Hanzawa M. Kubota M. Watanabe M. Furuya Action spectra for phytochrome A- and B-specific photoinduction of seed germination in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U. S. A. 1996 93 8129-8133.
30. J.-I. Kim J.-E. Park X. Zarate P.-S. Song Phytochrome phosphorylation in plant light signaling Photochem. Photobiol. Sci. 2005 4 681-687.
31. W. Parker P.-S. Song Location of helical regions in tetrapyrrole containing proteins by a helical hydrophobic moment analysis. Application to phytochrome J. Biol. Chem. 1990 265 17568-17575.
32. J. J. Casal S. J. Davis D. Kirchenbauer A. Viczian M. J. Yanovsky R. C. Clough S. Kircher E. T. Jordan-Beebe E. Schäfer F. Nagy R. D. Vierstra The serine-rich N-terminal domain of oat phytochrome A helps regulate light responses and subnuclear localization of the photoreceptor Plant Physiol. 2002 129 1127-1137.
33. B. L. Montgomery J. C. Lagarias Phytochrome ancestry: Sensors of bilins and light Trends Plant Sci. 2002 7 357-366.
34. J.-I. Kim and P.-S. Song, A Structure-function model based on inter-domain crosstalks in phytochromes, in Light Sensing in Plants, ed. M. Wada, K. Shimazaki and M. Iino, Springer-Verlag, Tokyo, 2005, pp. 53–63.
35. J.-I. Kim S. H. Bhoo Y.-J. Han X. Zarate P.-S. Song The PAS-2 domain is required for dimerization of phytochrome A J. Photochem. Photobiol., A 2006 178 115-121.
36. J. R. Wagner J. S. Brunzelle K. T. Forest R. D. Vierstra A light sensing knot revealed by the structure of the chromophore binding domain of phytochrome Nature 2005 438 325-331.
37. P. Lindemann S. E. Braslavsky M. M. Cordonnier L. H. Pratt K. Schaffner Photochem. Photobiol. 1993 58 417-424.
38. T. A. Wells M. Nakazawa K. Manabe P.-S. Song A conformational change associated with the phototransformation of Pisum phytochrome A as probed by fluorescent quenching Biochemistry 1994 33 708-712.
39. V. N. Lapko X. Y. Jiang D. L. Smith P.-S. Song Surface topography of phytochrome A deduced from specific chemical modification with iodoacetamide Biochemistry 1998 37 12526-12535.