The chromophore structures of the Pr states in plant and bacterial phytochromes

Biophysical Journal

Volumn 93, Issue 7, 2007, Pages 2410-2417

  Murgida, Daniel H ^a   Von Stetten, David ^a   Hildebrandt, Peter ^a   Schwinté, Pascale ^b   Siebert, Friedrich ^b   Sharda, Shivani ^c   Gärtner, Wolfgang ^c   Mroginski, Maria Andrea ^a  

^a TECHNISCHE UNIVERSITÄT BERLIN   (Germany)

^b UNIVERSITY OF FREIBURG   (Germany)

^c MAX PLANCK INSTITUTE FOR CHEMICAL ENERGY CONVERSION   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BILIVERDIN; PHYTOCHROME; TETRAPYRROLE DERIVATIVE;

AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIUM; CHEMICAL ANALYSIS; CHEMICAL STRUCTURE; CHROMATOPHORE; DEINOCOCCUS RADIODURANS; NONHUMAN; PHYTOCHEMISTRY; PLANT; QUANTUM CHEMISTRY; RAMAN SPECTROMETRY; STRUCTURE ANALYSIS;

BACTERIA (MICROORGANISMS); DEINOCOCCUS RADIODURANS;

EID: 34848835699     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.107.108092     Document Type: Article

References (25)

1. Schäfer, E., and F. Nagy, editors. 2006. Photomorphogenesis in Plants and Bacteria. Springer, Dordrecht, The Netherlands.
2. Rockwell, N. C., and J. C. Lagarias. 2006. The structure of phytochrome: a picture is worth a thousand spectra. Plant Cell. 18:4-14.
3. Rockwell, N. C., Y. S. Su, and J. C. Lagarias. 2006. Phytochrome structure and signaling mechanisms. Annu. Rev. Plant Biol. 57:837-858.
4. Kevei, E., and F. Nagy. 2003. Phytochrome controlled signalling cascades in higher plants. Physiol. Plant. 117:305-313.
5. Karniol, B., J. R. Wagner, J. M. Walker, and R. D. Vierstra. 2005. Phylogenetic analysis of the phytochrome superfamily reveals distinct microbial subfamilies of photoreceptors. Biochem. J. 392:103-116.
6. Mroginski, M. A., D. H. Murgida, and P. Hildebrandt. 2007. The chromophore structural changes during the photocycle of phytochrome: a combined resonance Raman and quantum chemical approach. Acc. Chem. Res. 40:258-266.
7. Mroginski, M. A., D. H. Murgida, D. von Stetten, C. Kneip, F. Mark, and P. Hildebrandt. 2004. Determination of the chromophore structures in the photoinduced reaction cycle of phytochrome. J. Am. Chem. Soc. 126:16734-16735.
8. Sharda, S., R. Shah, and W. Gärtner. 2007. Domain interaction in cyanobacterial phytochromes as a prerequisite for spectral integrity. Eur. Biophys. J. In press.
9. Lamparter, T., N. Michael, O. Caspani, T. Miyata, K. Shirai, and K. Inomata. 2003. Biliverdin binds covalently to Agrobacterium phytochrome Agp1 via its ring A vinyl side chain. J. Biol. Chem. 278:33786-33792.
10. Wagner, J. R., J. S. Brunzelle, K. T. Forest, and R. D. Vierstra. 2005. A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome. Nature. 438:325-331.
11. Lamparter, T., F. Mittmann, W. Gärtner, T. Börner, E. Hartmann, and J. Hughes. 1997. Characterization of recombinant phytochrome from the cyanobacterium Synechocystis. Proc. Natl. Acad. Sci. USA. 94:11792-11797.
12. Remberg, A., I. Lindner, T. Lamparter, J. Hughes, C. Kneip, P. Hildebrandt, S. E. Braslavsky, W. Gärtner, and K. Schaffner. 1997. Raman spectroscopic and light-induced kinetic characterization of a recombinant phytochrome of the cyanobacterium Synechocystis. Biochemistry. 36:13389-13395.
13. Knipp, B., K. Kneip, J. Matysik, W. Gärtner, P. Hildebrandt, S. E. Braslavsky, and K. Schaffner. 1997. Synthesis and resonance Raman spectroscopic characterization of biliverdin and phycocyanobilin isotopomers. Chem. Eur. J. 3:363-367.
14. 13C-labelled bilin compounds. Eur. J. Org. Chem. 8:1287-1293
15. Mozley, D., A. Remberg, and W. Gärtner. 1997. Large scale generation of affinity-purified recombinant phytochrome chromopeptide. Photochem. Photobiol. 686:710-715.
16. fr phototransformation of phytochrome. A resonance Raman spectroscopic study. Biochemistry. 38:15185-15192.
17. von Stetten, D., S. Seibeck, N. Michael, P. Scheerer, M. A. Mroginski, D. H. Murgida, N. Krauss, M. P. Heyn, P. Hildebrandt, B. Borucki, and T. Lamparter. 2007. Highly conserved residues D197 and H250 in Agp1 phytochrome control the proton affinity of the chromophore and Pfr formation. J. Biol. Chem. 282:2116-2123.
18. Magdó, I., K. Nemeth, F. Mark, P. Hildebrandt, and K. Schaffner. 1999. Calculation of vibrational spectra of linear tetrapyrroles. 1. Global sets of scaling factors for force fields derived by ab initio and density functional theory. J. Phys. Chem. A. 103:289-303.
19. Mroginski, M. A., D. H. Murgida, and P. Hildebrandt. 2006. Calculation of vibrational spectra of linear tetrapyrroles. 4. Methine bridge C-H out-of-plane modes. J. Phys. Chem. A. 110:10564-10574.
20. Mroginski, M. A., K. Nemeth, T. Bauschlicher, W. Klotzbücher, R. Goddard, O. Heinemann, P. Hildebrandt, and F. Mark. 2005. Calculation of vibrational spectra of linear tetrapyrroles. 3. Hydrogen-bonded hexamethylpyrromethene dimers. J. Phys. Chem. A. 109:2139-2150.
21. Schmidt, P., T. Gensch, A. Remberg, W. Gärtner, S. E. Braslavsky, and K. Schaffner. 1998. The complexity of the Pr → Pfr photo-transformation kinetics is an intrinsic property of homogeneous native phytochrome. Photochem. Photobiol. 68:754-761.
22. Mroginski, M. A., F. Mark, W. Thiel, and P. Hildebrandt. 2007. QM/MM calculation of the Raman spectra of the phycocyanobilin chromophore in α-C-phycocyanin. Biophys. J. In press.
23. Rüdiger, W., F. Thümmler, E. Cmiel, and S. Schneider. 1983. Chromophore structure of the physiologically active form (Pfr) of phytochrome. Proc. Natl. Acad. Sci. USA. 80:6244-6248.
24. Schirmer, T., W. Bode, and R. Huber. 1987. Refined three-dimensional structures of two cyanobacterial C-phycocyanins at 2.1 and 2.5 Å resolution. J. Mol. Biol. 196:677-695.
25. Borucki, B., D. von Stetten, S. Seibeck, T. Lamparter, N. Michael, M. A. Mroginski, H. Otto, D. H. Murgida, M. P. Heyn, and P. Hildebrandt. 2005. Light-induced proton release of phytochrome is coupled to the transient deprotonation of the tetrapyrrole chromophore. J. Biol. Chem. 280:34358-34364.