Translational regulation by non-protein-coding RNAs: Different targets, common themes

Biochemical and Biophysical Research Communications

Volumn 373, Issue 4, 2008, Pages 462-466

  Xie, Wen ^a   Ted Brown, W ^a   Denman, Robert B ^a  

^a NEW YORK STATE INSTITUTE FOR BASIC RESEARCH IN DEVELOPMENTAL DISABILITIES   (United States)

Author keywords

Argonaute proteins; AU rich elements; BC1 BC200 RNA; Fragile X mental retardation like protein 1; Micro RNAs; Naturally occurring antisense transcripts; Non protein coding RNAs; Pi RNAs; Ribonucleoprotein; RNA induced silencing complex

Indexed keywords

MESSENGER RNA; UNTRANSLATED RNA;

ALZHEIMER DISEASE; CELL METABOLISM; DEGENERATIVE DISEASE; DISEASE ASSOCIATION; MENTAL DEFICIENCY; MENTAL DISEASE; NEOPLASM; PRIORITY JOURNAL; RNA PROCESSING; RNA STABILITY; SHORT SURVEY; TRANSLATION REGULATION;

ALU ELEMENTS; ANIMALS; HUMANS; MICE; MICRORNAS; PEPTIDE CHAIN TERMINATION, TRANSLATIONAL; RIBONUCLEOPROTEINS; RNA, SMALL CYTOPLASMIC;

EID: 50949122690     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2008.06.075     Document Type: Short Survey

References (48)

1. Prasanth K.V., and Spector D.L. Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum. Genes Dev. 21 (2007) 11-42
2. Huttenhofer A., Schattner P., and Polacek N. Non-coding RNAs: hope or hype?. Trends Genet. 21 (2005) 289-297
3. Morey C., and Avner P. Employment opportunities for non-coding RNAs. FEBS Lett. 567 (2004) 27-34
4. Cao X., Yeo G., Muotri A.R., Kuwabara T., and Gage F.H. Noncoding RNAs in the mammalian central nervous system. Annu. Rev. Neurosci. 29 (2006) 77-103
5. Costa F.F. Non-coding RNAs: new players in eukaryotic biology. Gene 357 (2005) 83-94
6. Matera A.G., Terns R.M., and Terns M.P. Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs. Nat. Rev. Mol. Cell Biol. 8 (2007) 209-220
7. Hartig J.V., Tomari Y., and Forstemann K. piRNAs: the ancient hunters of genome invaders. Genes Dev. 21 (2007) 1707-1713
8. Jackson R.J., and Standart N. How do microRNAs regulate gene expression?. Sci. STKE 367 (2007) re1
9. Mathonnet G., Fabian M.R., Svitkin Y.V., Parsyan A., Huck L., Murata T., Biffo S., Merrick W.C., Darzynkiewicz E., Pillai R.S., Filipowicz W., Duchaine T.F., and Sonenberg N. MicroRNA inhibition of translation initiation in vitro by targeting the cap-binding complex eIF4F. Science 317 (2007) 1764-1767
10. Wakiyama M., Takimoto K., Ohara O., and Yokoyama S. Let-7 microRNA-mediated mRNA deadenylation and translational repression in a mammalian cell-free system. Genes Dev. 21 (2007) 1857-1862
11. Thermann R., and Hentze M.W. Drosophila miR2 induces pseudo-polysomes and inhibits translation initiation. Nature 447 (2007) 875-878
12. Vasudevan S., Tong Y., and Steitz J.A. Switching from repression to activation: microRNAs can up-regulate translation. Science 318 (2007) 1931-1934
13. Grivna S.T., Pyhtila B., and Lin H. MIWI associates with translational machinery and PIWI-interacting RNAs (piRNAs) in regulating spermatogenesis. PNAS 103 (2006) 13415-13420
14. Wang H., Iacoangeli A., Popp S., Muslimov I., Imataka H., Sonenberg N., Lomakin I., and Tiedge H. Dendritic BC1 RNA: functional role in regulation of translational initiation. J. Neurosci. 22 (2003) 10232-10241
15. Wang H., Iacoangeli A., Lin D., Williams K., Denman R.B., Hellen C.U.T., and Tiedge H. Dendritic BC1 RNA in translational control mechanisms. J. Cell Biol. 171 (2005) 811-821
16. Hasler J., and Strub K. Alu RNP and Alu RNA regulate translation initiation in vitro. Nucleic Acids Res. 34 (2006) 2374-2385
17. Rubin C.M., Kimura R.H., and Schmid C.W. Selective stimulation of translational expression by Alu RNA. Nucl. Acids Res. 30 (2002) 3253-3261
18. Sutcliffe J.G., Milner R.J., Bloom F.E., and Lerner R.A. Common 82-nucleotide sequence unique to brain RNA. Proc. Natl. Acad. Sci. USA 79 (1982) 4942-4946
19. Muslimov I.A., Banker G., Brosius J., and Tiedge H. Activity-dependent regulation of dendritic BC1 RNA in hippocampal neurons in culture. J. Cell Biol. 141 (1998) 1601-1611
20. Muddashetty R.S., Khanam T., Kondrashov A., Bundman M., Iacoangeli A., Kremerskothen J., Duning K., Barnekow A., Huttenhofer A., Tiedge H., and Brosius J. Poly(A)-binding protein is associated with neuronal BC1 and BC200 ribonucleoprotein particles. J. Mol. Biol. 321 (2002) 433-445
21. Cristofanilli M., Iacoangeli A., Muslimov I.A., and Tiedge H. Neuronal BC1 RNA: microtubule-dependent dendritic delivery. J. Mol. Biol. 356 (2006) 1118-1123
22. Chen W., Heierhorst J., Brosius J., and Tiedge H. Expression of neural BC1 RNA: induction in murine tumours. Eur. J. Cancer 33 (1997) 288-292
23. Chen W., Böcker W., Brosius J., and Tiedge H. Expression of neural BC200 RNA in human tumours. J. Pathol. 183 (1997) 345-351
24. Mus E., Hof P.R., and Tiedge H. Dendritic BC200 RNA in aging and in Alzheimer's disease. PNAS 104 (2007) 10679-10684
25. Lewejohann L., Skryabin B.V., Sachser N., Prehn C., Heiduschka P., Thanos S., Jordan U., Dell'Omo G., Vyssotski A.L., and Pleskacheva M.G. Role of a neuronal small non-messenger RNA: behavioural alterations in BC1 RNA-deleted mice. Behav. Brain Res. 154 (2004) 273-289
26. Lin D., Pestova T.V., Hellen C.U.T., and Tiedge H. Translational control by a small RNA: dendritic BC1 RNA targets the eukaryotic initiation factor 4A helicase mechanism. Mol. Cell. Biol. 28 (2008) 3008-3019
27. Häsler J., Samuelsson T., and Strub K. Useful 'junk': Alu RNAs in the human transcriptome. Cell Mol. Life Sci. (CMLS) 64 (2007) 1793-1800
28. Hasler J., and Strub K. Alu elements as regulators of gene expression. Nucl. Acids Res. 34 (2006) 5491-5497
29. Landry J.-R., Medstrand P., and Mager D.L. Repetitive elements in the 5′ untranslated region of a human zinc-finger gene modulate transcription and translation efficiency. Genomics 76 (2001) 110-116
30. Sobczak K., and Krzyzosiak W.J. Structural determinants of BRCA1 translational regulation. J. Biol. Chem. 277 (2002) 17349-17358
31. Lukiw W. Micro-RNA speciation in fetal adult and Alzheimer's disease hippocampus. Neuroreport 18 (2007) 297-300
32. Bai G., Ambalavanar R., Wei D., and Dessem D. Downregulation of selective microRNAs in trigeminal ganglion neurons following inflammatory muscle pain. Mol. Pain 3 (2007) 1-4
33. Pillai R.S., Bhattacharyya S.N., Artus C.G., Zoller T., Cougot N., Basyuk E., Bertrand E., and Filipowicz W. Inhibition of translational initiation by let-7 microRNA in human cells. Science 309 (2005) 1573-1576
34. Wang B., Love T.M., Call M.E., Doench J.G., and Novina C.D. Recapitulation of short RNA-directed translational gene silencing in vitro. Mol. Cell 22 (2006) 553-560
35. Vasudevan S., and Steitz J.A. AU-rich-element-mediated upregulation of translation by FXR1 and Argonaute 2. Cell 128 (2007) 1105-1118
36. Lau N.C., Seto A.G., Kim J., Kuramochi-Miyagawa S., Nakano T., Bartel D.P., and Kingston R.E. Characterization of the piRNA complex from rat testes. Science 313 (2006) 363-367
37. Kim V.N. Small RNAs just got bigger: Piwi-interacting RNAs (piRNAs) in mammalian testes. Genes Dev. 20 (2006) 1993-1997
38. Aravin A.A., Hannon G.J., and Brennecke J. The piwi-piRNA pathway provides an adaptive defense in the transposon arms race. Science 318 (2007) 761-764
39. Klattenhoff C., and Theurkauf W. Biogenesis and germline functions of piRNAs. Development 135 (2008) 3-9
40. Vagin V.V., Sigova A., Li C., Seitz H., Gvozdev V., and Zamore P.D. A distinct small RNA pathway silences selfish genetic elements in the germline. Science 313 (2006) 320-324
41. Deng W., and Lin H. Miwi a murine homolog of piwi encodes a cytoplasmic protein essential for spermatogenesis. Dev. Cell 2 (2002) 819-830
42. Grivna S.T., Beyret E., Wang Z., and Lin H. A novel class of small RNAs in mouse spermatogenic cells. Genes Dev. 20 (2006) 1709-1714
43. Mallardo M., Deitinghoff A., Muller J., Goetze B., Macchi P., Peters C., and Kiebler M.A. Isolation and characterization of staufen-containing ribonucleoprotein particles from rat brain. PNAS 100 (2003) 2100-2105
44. Ferrari F., Mercaldo V., Piccoli G., Sala C., Cannata S., Achsel T., and Bagni C. The fragile X mental retardation protein-RNP granules show an mGluR-dependent localization in the post-synaptic spines. Mol. Cell. Neurosci. 34 (2007) 343-354
45. Krichevsky A.M., and Kosik K.S. Neuronal RNA granules: a link between RNA localization and stimulation-dependent translation. Neuron 32 (2001) 683-696
46. Evans D., Marquez S.M., and Pace N.R. RNase P: interface of the RNA and protein worlds. Trends Biochem. Sci. 31 (2006) 333-341
47. Dewannieux M., Esnault C., and Heidmann T. LINE-mediated retrotransposition of marked Alu sequences. Nat. Genet. 35 (2003) 41-48
48. Schmitz J., Ohme M., and Zischler H. SINE insertions in cladistic analyses and the phylogenetic affiliations of Tarsius bancanus to other primates. Genetics 157 (2001) 777-784