Extinction and the spatial dynamics of biodiversity

Proceedings of the National Academy of Sciences of the United States of America

Volumn 105, Issue SUPPL. 1, 2008, Pages 11528-11535

  Jablonski, David ^a  

^a UNIVERSITY OF CHICAGO   (United States)

Author keywords

Biogeography; Macroevolution; Recovery

Indexed keywords

BIODIVERSITY; CONFERENCE PAPER; FOSSIL; GEOGRAPHICAL VARIATION (SPECIES); MUSSEL; NONHUMAN; PRIORITY JOURNAL; SCALLOP; SPECIES EXTINCTION; SURVIVAL RATE; ANIMAL; ARTICLE; EVOLUTION; GEOGRAPHY; SPECIES DIFFERENCE;

ANIMALS; EVOLUTION; EXTINCTION, BIOLOGICAL; FOSSILS; GEOGRAPHY; SPECIES SPECIFICITY;

EID: 50049089066     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0801919105     Document Type: Article

References (92)

1. Paradis E (2004) Can extinction rates be estimated without fossils? J Theor Biol 229:19-30.
2. Ricklefs RE (2007) History and diversity: Explorations at the intersection of ecology and evolution. Am Nat 170(Suppl):S56-S70.
3. Ricklefs RE (2007) Estimating diversification rates from phylogenetic information. Trends Ecol Evol 22:601-610.
4. Jablonski D, Roy K, Valentine JW (2006) Out of the tropics: Evolutionary dynamics of the latitudinal diversity gradient. Science 314:102-106.
5. Raup DM (1994) The role of extinction in evolution. Proc Natl Acad Sci USA 91:6758-6763.
6. Bambach RK, Knoll AH, Wang SC (2004) Origination, extinction, and mass depletions of marine diversity. Paleobiology 30:522-542.
7. Jablonski D (2005) Mass extinctions and macroevolution. Paleobiology 31(Suppl):92-210.
8. Stanley SM (2007) An analysis of the history of marine animal diversity. Paleobiology 33(Suppl):1-55.
9. Crame JA (2000) Evolution of taxonomic diversity gradients in the marine realm: Evidence from the composition of recent bivalve faunas. Paleobiology 26:188-214.
10. Crame JA (2002) Evolution of taxonomic diversity gradients in the marine realm: A comparison of Late Jurassic and Recent bivalve faunas. Paleobiology 28:184-207.
11. Jablonski D, Roy K, Valentine JW, Price RM, Anderson PS (2003) The impact of the pull of the recent on the history of bivalve diversity. Science 300:1133-1135.
12. Kidwell SM (2005) Shell composition has no net impact on large-scale evolutionary patterns in mollusks. Science 307:914-917.
13. Valentine JW, Jablonski D, Kidwell SM, Roy K (2006) Assessing the fidelity of the fossil record by using marine bivalves. Proc Natl Acad Sci USA 103:6599-6604.
14. Krug AZ, Jablonski D, Valentine JW (2007) Contrarian clade confirms the ubiquity of spatial origination patterns in the production of latitudinal diversity gradients. Proc Natl Acad Sci USA 104:18129-18134.
15. Alroy J (2000) New methods for quantifying macroevolutionary patterns and processes. Paleobiology 26:707-733.
16. Foote M (2003) Origination and extinction through the Phanerozoic: A new approach. J Geol 111:125-148.
17. Bush AM, Bambach RK (2004) Did alpha diversity increase during the Phanerozoic? Lifting the veils of taphonomic, latitudinal, and environmental biases. J Geol 112:625-642.
18. Bush AM, Markey MJ, Marshall CR (2004) Removing bias from diversity curves: The effects of spatially organized biodiversity on sampling standardization. Paleobiology 30:666-686.
19. Smith AB (2007) Marine diversity through the Phanerozoic: Problems and prospects. J Geol Soc (London) 164:731-745.
20. Purvis A, Jones KE, Mace GM (2000) Extinction BioEssays 22:1123-1133.
21. Purvis A, Cardillo M, Grenyer R, Collen B (2005) in Phylogeny and Conservation, eds Purvis A, Gittleman JL, Brooks T (Cambridge Univ Press, Cambridge), pp 295-316.
22. Purvis A (2008) Phylogenetic trees and the future of mammalian biodiversity. Proc Natl Acad Sci USA 105(Suppl):11556-11563.
23. Hunt G, Roy K, Jablonski D (2005) Heritability of geographic range sizes revisited. Am Nat 166:129-135.
24. Jablonski D, Hunt G (2006) Larval ecology, geographic range, and species survivorship in Cretaceous mollusks: Organismic vs. species-level explanations. Am Nat 168:556-564.
25. Kammer TW, Baumiller TK, Ausich WI (1998) Evolutionary significance of differential species longevity in Osagean-Meramecian (Mississippian) crinoid clades. Paleobiology 24:155-176.
26. Jablonski D (1986) Background and mass extinctions: The alternation of macroevolutionary regimes. Science 231:129-133.
27. Kiessling W, Baron-Szabo RC (2004) Extinction and recovery patterns of scleractinian corals at the Cretaceous-Tertiary boundary. Palaeogeogr Palaeoclimatol Palaeoecol 214:195-223.
28. Jablonski D, Raup DM (1995) Selectivity of end-Cretaceous marine bivalve extinctions. Science 268:389-391.
29. Campbell CA, Valentine JW (1977) Comparability of modern and ancient marine faunal provinces. Paleobiology 3:49-57.
30. Roy K, Jablonski D, Valentine JW (1996) Higher taxa in biodiversity studies: Patterns from eastern Pacific marine mollusks. Phil Trans R Soc London Ser B 351:1605-1613.
31. Burnham KP, Anderson DR (2002) Model Selection and Multimodel Inference (Springer, New York), 2nd ed.
32. Hosmer DW, Lemeshow S (2000) Applied Logistic Regression (Wiley, New York), 2nd Ed.
33. Payne JL, Finnegan S (2007) The effect of geographic range on extinction risk during background and mass extinction. Proc Natl Acad Sci USA 104:10506-10511.
34. Powell MG (2007) Geographic range and genus longevity of late Paleozoic brachiopods. Paleobiology 33:530-546.
35. Erwin DH (2001) Lessons from the past: Biotic recoveries from mass extinctions. Proc Natl Acad Sci USA 98:5399-5403.
36. Jablonski D (2001) Lessons from the past: Evolutionary impacts of mass extinctions. Proc Natl Acad Sci USA 98:5393-5398.
37. Erwin DH (2008) Extinction as the loss of evolutionary history. Proc Natl Acad Sci USA 105(Suppl):11520-11527.
38. Jablonski D (2007) Scale and hierarchy in macroevolution. Palaeontology 50:87-109.
39. Skelton PW (1985) Preadaptation and evolutionary innovation in rudist bivalves. Spec Pap Palaeontol 33:159-173.
40. Seilacher A (1998) in Bivalves, an Eon of Evolution, eds Johnston PA, Haggart JW (University of Calgary, Calgary, Canada), pp 423-436.
41. Steuber T, Mitchell SF, Buhl D, Gunter G, Kasper HU (2002) Catastrophic extinction of Caribbean rudist bivalves at the Cretaceous/Tertiary boundary. Geology 30:999-1002.
42. Steuber T (2000) Skeletal growth rates of Upper Cretaceous rudist bivalves: Implications for carbonate production and organism-environment feedbacks. Geol Soc London Spec Publ 178:21-32.
43. Freckleton RP, Harvey PH, Pagel M (2002) Phylogenetic analysis and comparative data: A test and review of evidence. Am Nat 160:712-726.
44. Paradis E (2005) Statistical analysis of diversification with species traits. Evolution (Lawrence, Kans) 59:1-12.
45. Anstey RL (1978) Taxonomic survivorship and morphologic complexity in Paleozoic bryozoan genera. Paleobiology 4:407-418.
46. Anstey RL (1986) Bryozoan provinces and patterns of generic evolution and extinction in the Late Ordovician of North America. Lethaia 19:33-51.
47. Raup DM, Jablonski D (1993) Geography of end-Cretaceous marine bivalve extinctions. Science 260:971-973.
48. Smith AB, McGowan AJ (2007) The shape of the Phanerozoic marine palaeodiversity curve: How much can be predicted from the sedimentary rock record of western Europe? Palaeontology 50:765-774.
49. Kitamura A, Omote H, Oda M (2000) Molluscan response to early Pleistocene rapid warming in the Sea of Japan. Geology 28:723-726.
50. Monegatti P, Raffi S (2001) Taxonomic diversity and stratigraphic distribution of Mediterranean Pliocene bivalves. Palaeogeogr Palaeoclimatol Palaeoecol 165:171-193.
51. Todd JA, et al. (2002) The ecology of extinction: Molluscan feeding and faunal turnover in the Caribbean Neogene. Proc R Soc London Ser B 269:571-577.
52. Smith JT, Roy K (2006) Selectivity during background extinction: Plio-Pleistocene scallops in California. Paleobiology 32:408-416.
53. Rivadeneira MM, Marquet PA (2007) Selective extinction of late Neogene bivalves on the temperate Pacific coast of South America. Paleobiology 33:455-468.
54. Ravelo AC, Andreasen DH, Lyle M, Lyle AO, Wara MW (2004) Regional climate shifts caused by gradual global cooling in the Pliocene epoch. Nature 429:263-267.
55. Huntley B (2005) in Climate Change and Biodiversity, eds Lovejoy TE, Hannah L (Yale Univ Press, New Haven, CT), pp 109-124.
56. Valentine JW (1983) in Biotic Interactions in Recent and Fossil Benthic Communities, eds Tevesz MJS, McCall PL (Plenum, New York), pp 121-156.
57. Valentine JW, Jablonski D, Krug AZ, Roy K (2008) Incumbency, diversity, and latitudinal gradients. Paleobiology 34:169-178.
58. Ruiz GM, Fofonoff PW, Carlton JT, Wonham MJ, Hines AH (2000) Invasion of coastal marine communities in North America: Apparent patterns, processes, and biases. Annu Rev Ecol Syst 31:481-531.
59. Jackson JBC, et al. (2001) Historical overfishing and the recent collapse of coastal ecosystems. Science 293:629-638.
60. Lötze HK, et al. (2006) Depletion, degradation, and recovery potential of estuaries and coastal seas worldwide. Science 312:1806-1809.
61. Jablonski D (2002) Survival without recovery after mass extinctions. Proc Natl Acad Sci USA 99:8139-8144.
62. Jablonski D (1998) Geographic variation in the molluscan recovery from the end-Cretaceous extinction. Science 279:1327-1330.
63. Krug AZ, Patzkowsky ME (2007) Geographic variation in turnover and recovery from the Late Ordovician mass extinction. Paleobiology 33:435-454.
64. Chen ZQ, Kaiho K, George AD (2005) Early Triassic recovery of the brachiopod faunas from the end-Permian mass extinction: A global review. Palaeogeogr Palaeoclimatol Palaeoecol 224:270-290.
65. Bonuso N, Bottjer DJ (2008) A test of biogeographical, environmental, and ecological effect on Middle and Late Triassic brachiopod and bivalve abundance patterns. Palaios 23:43-54.
66. McGowan AJ (2005) Ammonoid recovery from the Late Permian mass extinction event. Comptes Rendus Palevol 4:517-530.
67. Brayard A, et al. (2006) The Early Triassic ammonoid recovery: Paleoclimatic significance of diversity gradients. Palaeogeogr Palaeoclimatol Palaeoecol 239:374-395.
68. Fridley JD, et al. (2007) The invasion paradox: Reconciling pattern and process in species invasions. Ecology 88:3-17.
69. Hansen TA (1988) Early Tertiary radiation of marine molluscs and the long-term effects of the Cretaceous-Tertiary extinction. Paleobiology 14:37-51.
70. Alroy J (1999) The fossil record of North American mammals: Evidence for a Paleocene evolutionary radiation. Syst Biol 48:107-118.
71. Cifelli RL, Gordon CL (2007) Recrowning mammals. Nature 447:918-920.
72. Jablonski D (2008) Biotic interactions and macroevolution: Extensions and mismatches across scales and levels. Evolution (Lawrence, Kans) 62:715-739.
73. Sax DF, et al. (2007) Ecological and evolutionary insights from species invasions. Trends Ecol Evol 22:465-471.
74. Hillebrand H (2004) On the generality of the latitudinal diversity gradient. Am Nat 163:192-211.
75. Mittelbach GG, et al. (2007) Evolution and the latitudinal diversity gradient: Speciation, extinction, and biogeography. Ecol Lett 10:315-331.
76. Allison PA, Briggs DEG (1993) Paleolatitudinal sampling bias, Phanerozoic species diversity, and the end-Permian extinction. Geology 21:65-68.
77. Jackson JBC, Johnson KG (2001) Measuring past biodiversity. Science 293:2401-2404.
78. Goldberg EE, Roy K, Lande R, Jablonski D (2005) Diversity, endemism, and age distributions in macroevolutionary sources and sinks. Am Nat 165:623-633.
79. Roy K, Goldberg EE (2007) Origination, extinction, and dispersal: Integrative models for understanding present-day diversity gradients. Am Nat 170(Suppl):S71-S85.
80. Jansson R, Dynesius M (2002) The fate of clades in aworld of recurrent climatic change: Milankovitch oscillations and evolution. Annu Rev Ecol Syst 33:741-777.
81. Lyle MW, et al. (2008) The Pacific Ocean and Cenozoic evolution of climate. Rev Geophys, 10.1029/2005RG000190.
82. Vermeij GJ (2005) in Species Invasions, eds Sax DF, Stachowicz JS, Gaines SD (Sinauer, Sunderland, MA), pp 315-339.
83. Weir JT, Schluter D (2007) The latitudinal gradient in recent speciation and extinction rates of birds and mammals. Science 315:1574-1576.
84. Hawkins BA, Diniz-Filho JAF, Jaramillo CA, Soeller SA Climate, niche conservatism, and the global bird diversity gradient. Am Nat 170(Suppl):S16-S27.
85. Wiens JJ (2007) Global patterns of species richness and diversification in amphibians. Am Nat 170(Suppl):S86-S106.
86. Kerp HAAH, Vörding B, Bandel K (2006) Typical Triassic Gondwanan floral elements in the Upper Permian of the paleotropics. Geology 34:265-268.
87. Duncan JR, Lockwood JL (2001) Extinction in a field of bullets:Asearch for causes in the decline of the world's freshwater fishes. Biol Conserv 102:97-105.
88. Fisher DO, Blomberg SP, Owens IPF (2003) Extrinsic versus intrinsic factors in the decline and extinction of Australian marsupials. Proc R Soc London Ser B 270:1801-1808.
89. Jackson J (2008) Ecological extinction and evolution in the brave new ocean. Proc Natl Acad Sci USA 105(Suppl):11458-11465.
90. Owens IPF, Bennett PM (2000) Ecological basis of extinction risk in birds: Habitat loss versushuman persecution and introduced predators. Proc Natl Acad Sci USA 97:12144-12148.
91. Fréville H, McConway K, Dodd M, Silvertown J (2007) Prediction of extinction in plants: Interaction of extrinsic threats and life history traits. Ecology 88:2662-2672.
92. Barnosky AD (2008) Megafauna biomass tradeoff as a driver of Quaternary and future extinctions. Proc Natl Acad Sci USA 105(Suppl):11543-11548.