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Volumn 92, Issue 1, 2008, Pages 121-134

HEMET: Mathematical model of biochemical pathways for simulation and prediction of HEpatocyte METabolism

Author keywords

Biochemical equations; Cell model; Dynamic systems; Hepatocyte; Metabolism

Indexed keywords

BIOCHEMISTRY; DIFFERENCE EQUATIONS; DIFFERENTIAL EQUATIONS; DIFFERENTIATION (CALCULUS); FORECASTING; METABOLISM; STANDARDIZATION; STANDARDS;

EID: 49949089863     PISSN: 01692607     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cmpb.2008.06.004     Document Type: Article
Times cited : (12)

References (38)
  • 4
    • 33747886784 scopus 로고    scopus 로고
    • Quantitative stem cell biology: computational studies in the hematopoietic system
    • Roeder I. Quantitative stem cell biology: computational studies in the hematopoietic system. Curr. Opin. Hematol. 13 July (4) (2006) 222-228
    • (2006) Curr. Opin. Hematol. , vol.13 , Issue.July 4 , pp. 222-228
    • Roeder, I.1
  • 5
    • 0027370376 scopus 로고
    • GEPASI: a software package for modelling the dynamics, steady states and control of biochemical and other systems
    • Mendes P. GEPASI: a software package for modelling the dynamics, steady states and control of biochemical and other systems. Comput. Appl. Biosci. 9 October (5) (1993) 563-571
    • (1993) Comput. Appl. Biosci. , vol.9 , Issue.October 5 , pp. 563-571
    • Mendes, P.1
  • 6
    • 0020740241 scopus 로고
    • Analysis of numerical methods for computer simulation of kinetic processes: development of KINSIM-a flexible, portable system
    • Barshop B.A., Wrenn R.F., and Frieden C. Analysis of numerical methods for computer simulation of kinetic processes: development of KINSIM-a flexible, portable system. Anal. Biochem. 130 April 1 (1) (1983) 134-145
    • (1983) Anal. Biochem. , vol.130 , Issue.April 1 1 , pp. 134-145
    • Barshop, B.A.1    Wrenn, R.F.2    Frieden, C.3
  • 7
    • 0030792287 scopus 로고    scopus 로고
    • New PC versions of the kinetic-simulation and fitting programs, KINSIM and FITSIM
    • Dang Q., and Frieden C. New PC versions of the kinetic-simulation and fitting programs, KINSIM and FITSIM. Trends Biochem. Sci. 22 August (8) (1997) 317
    • (1997) Trends Biochem. Sci. , vol.22 , Issue.August 8 , pp. 317
    • Dang, Q.1    Frieden, C.2
  • 8
    • 0029073341 scopus 로고
    • MIST: a user-friendly metabolic simulator
    • Ehlde M., and Zacchi G. MIST: a user-friendly metabolic simulator. Comput. Appl. Biosci. 11 April (2) (1995) 201-207
    • (1995) Comput. Appl. Biosci. , vol.11 , Issue.April 2 , pp. 201-207
    • Ehlde, M.1    Zacchi, G.2
  • 9
    • 0026023024 scopus 로고
    • MetaModel: a program for modelling and control analysis of metabolic pathways on the IBM PC and compatibles
    • Cornish-Bowden A., and Hofmeyr J.H. MetaModel: a program for modelling and control analysis of metabolic pathways on the IBM PC and compatibles. Comput. Appl. Biosci. 7 January (1) (1991) 89-93
    • (1991) Comput. Appl. Biosci. , vol.7 , Issue.January 1 , pp. 89-93
    • Cornish-Bowden, A.1    Hofmeyr, J.H.2
  • 10
    • 0027178664 scopus 로고
    • SCAMP: a general-purpose simulator and metabolic control analysis program
    • Sauro H.M. SCAMP: a general-purpose simulator and metabolic control analysis program. Comput. Appl. Biosci. 9 August (4) (1993) 441-450
    • (1993) Comput. Appl. Biosci. , vol.9 , Issue.August 4 , pp. 441-450
    • Sauro, H.M.1
  • 12
    • 0033591259 scopus 로고    scopus 로고
    • What controls glycolysis in bloodstream form Trypanosoma brucei?
    • Bakker B.M., Michels P.A., Opperdoes F.R., and Westerhoff H.V. What controls glycolysis in bloodstream form Trypanosoma brucei?. J. Biol. Chem. 274 21 (1999) 14551-14559
    • (1999) J. Biol. Chem. , vol.274 , Issue.21 , pp. 14551-14559
    • Bakker, B.M.1    Michels, P.A.2    Opperdoes, F.R.3    Westerhoff, H.V.4
  • 13
    • 0030797355 scopus 로고    scopus 로고
    • Robustness in simple biochemical networks
    • Barkai N., and Leibler S. Robustness in simple biochemical networks. Nature 387 6636 (1997) 913-917
    • (1997) Nature , vol.387 , Issue.6636 , pp. 913-917
    • Barkai, N.1    Leibler, S.2
  • 14
    • 0033555859 scopus 로고    scopus 로고
    • Emergent properties of networks of biological signaling pathways
    • Bhalla U.S., and Iyengar R. Emergent properties of networks of biological signaling pathways. Science 283 5400 (1999) 381-387
    • (1999) Science , vol.283 , Issue.5400 , pp. 381-387
    • Bhalla, U.S.1    Iyengar, R.2
  • 15
    • 0035667360 scopus 로고    scopus 로고
    • Information transfer in metabolic pathways: effects of irreversible steps in computer models
    • Cornish-Bowden A., and Cardenas M.L. Information transfer in metabolic pathways: effects of irreversible steps in computer models. Eur. J. Biochem. 268 24 (2001) 6616-6624
    • (2001) Eur. J. Biochem. , vol.268 , Issue.24 , pp. 6616-6624
    • Cornish-Bowden, A.1    Cardenas, M.L.2
  • 16
    • 0003381877 scopus 로고
    • Metabolic control mechanisms V: a solution for the equations representing interaction between glycolysis and respiration in ascites tumor cells
    • Chance B., Garfinkel D., Higgins J., and Hess B. Metabolic control mechanisms V: a solution for the equations representing interaction between glycolysis and respiration in ascites tumor cells. J. Biol. Chem. 235 8 (1960) 2426-2439
    • (1960) J. Biol. Chem. , vol.235 , Issue.8 , pp. 2426-2439
    • Chance, B.1    Garfinkel, D.2    Higgins, J.3    Hess, B.4
  • 17
    • 78651189765 scopus 로고
    • On the nature of allosteric transitions: a plausible model
    • Monod J., Wyman J., and Changeux J.P. On the nature of allosteric transitions: a plausible model. J. Mol. Biol. 12 (1965) 88-118
    • (1965) J. Mol. Biol. , vol.12 , pp. 88-118
    • Monod, J.1    Wyman, J.2    Changeux, J.P.3
  • 18
    • 33947472850 scopus 로고
    • A schematic method of deriving the rate laws for enzyme catalyzed reactions
    • King E.L., and Altman C. A schematic method of deriving the rate laws for enzyme catalyzed reactions. J. Phys. Chem. 60 (1956) 1375-1378
    • (1956) J. Phys. Chem. , vol.60 , pp. 1375-1378
    • King, E.L.1    Altman, C.2
  • 19
    • 0342576227 scopus 로고    scopus 로고
    • Growth energetics and metabolic fluxes in continuous cultures of Penicillium chrysogenum
    • Henriksen C.M., Christensen L.H., Nielsen J., and Villadsen J. Growth energetics and metabolic fluxes in continuous cultures of Penicillium chrysogenum. J. Biotechnol. 45 (1996) 149-164
    • (1996) J. Biotechnol. , vol.45 , pp. 149-164
    • Henriksen, C.M.1    Christensen, L.H.2    Nielsen, J.3    Villadsen, J.4
  • 20
    • 0037079023 scopus 로고    scopus 로고
    • Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
    • Ibarra R.U., Edwards J.S., and Palsson B.O. Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth. Nature 420 6912 (2002) 186-189
    • (2002) Nature , vol.420 , Issue.6912 , pp. 186-189
    • Ibarra, R.U.1    Edwards, J.S.2    Palsson, B.O.3
  • 21
    • 0018393802 scopus 로고
    • Identification of metabolic model: citrate production from glucose by Candida lipolytica
    • Aiba S., and Matsuoka M. Identification of metabolic model: citrate production from glucose by Candida lipolytica. Biotechnol. Bioeng. 21 8 (1979) 1373-1386
    • (1979) Biotechnol. Bioeng. , vol.21 , Issue.8 , pp. 1373-1386
    • Aiba, S.1    Matsuoka, M.2
  • 22
    • 0032990166 scopus 로고    scopus 로고
    • Mathematical models of metabolic pathways
    • Varner J., and Ramkrishna D. Mathematical models of metabolic pathways. Curr. Opin. Biotechnol. 10 2 (1999) 146-150
    • (1999) Curr. Opin. Biotechnol. , vol.10 , Issue.2 , pp. 146-150
    • Varner, J.1    Ramkrishna, D.2
  • 23
    • 0036708443 scopus 로고    scopus 로고
    • Dynamic flux balance analysis of diauxic growth in Escherichia coli
    • Mahadevan R., Edwards J.S., and Doyle F.J. Dynamic flux balance analysis of diauxic growth in Escherichia coli. Biophys. J. 83 3 (2002) 1331-1340
    • (2002) Biophys. J. , vol.83 , Issue.3 , pp. 1331-1340
    • Mahadevan, R.1    Edwards, J.S.2    Doyle, F.J.3
  • 24
    • 26844531259 scopus 로고    scopus 로고
    • Hybrid dynamic/static method for large-scale simulation of metabolism
    • Yugi K., Nakayama Y., Kinoshita A., and Tomita M. Hybrid dynamic/static method for large-scale simulation of metabolism. Theor. Biol. Med. Model. 2 October 4 (2005) 42
    • (2005) Theor. Biol. Med. Model. , vol.2 , Issue.October 4 , pp. 42
    • Yugi, K.1    Nakayama, Y.2    Kinoshita, A.3    Tomita, M.4
  • 25
    • 40349098772 scopus 로고    scopus 로고
    • Development of neural circuitry for precise temporal sequences through spontaneous activity, axon remodeling, and synaptic plasticity
    • Jun J.K., and Jin D.Z. Development of neural circuitry for precise temporal sequences through spontaneous activity, axon remodeling, and synaptic plasticity. PLoS ONE 2 August 8 (2007) e723
    • (2007) PLoS ONE , vol.2 , Issue.August 8
    • Jun, J.K.1    Jin, D.Z.2
  • 28
    • 0036298294 scopus 로고    scopus 로고
    • Metabolomics: quantification of intracellular metabolite dynamics
    • Buchholz A., Hurlebaus J., Wandrey C., and Takors R. Metabolomics: quantification of intracellular metabolite dynamics. Biomol. Eng. 19 June (1) (2002) 5-15
    • (2002) Biomol. Eng. , vol.19 , Issue.June 1 , pp. 5-15
    • Buchholz, A.1    Hurlebaus, J.2    Wandrey, C.3    Takors, R.4
  • 29
    • 34047180566 scopus 로고    scopus 로고
    • Molecular mechanism of liver development and regeneration
    • (Review)
    • Tanimizu N., and Miyajima A. Molecular mechanism of liver development and regeneration. Int. Rev. Cytol. 259 (2007) 1-48 (Review)
    • (2007) Int. Rev. Cytol. , vol.259 , pp. 1-48
    • Tanimizu, N.1    Miyajima, A.2
  • 31
    • 0004039789 scopus 로고
    • Springer-Verlag New York, Inc.
    • Barman T.E. Enzyme Handbook (1969), Springer-Verlag New York, Inc.
    • (1969) Enzyme Handbook
    • Barman, T.E.1
  • 32
    • 27744590742 scopus 로고    scopus 로고
    • Novel quantitative tools for engineering analysis of hepatocyte cultures in bioartificial liver systems
    • Sharma N.S., Ierapetritou M.G., and Yarmush M.L. Novel quantitative tools for engineering analysis of hepatocyte cultures in bioartificial liver systems. Biotechnol. Bioeng. 92 November 5 (3) (2005) 321-335
    • (2005) Biotechnol. Bioeng. , vol.92 , Issue.November 5 3 , pp. 321-335
    • Sharma, N.S.1    Ierapetritou, M.G.2    Yarmush, M.L.3
  • 33
    • 0036892817 scopus 로고    scopus 로고
    • Microsyringe-based deposition of two-dimensional and three-dimensional polymer scaffolds with a well-defined geometry for application to tissue engineering
    • Vozzi G., Previti A., De Rossi D., and Ahluwalia A. Microsyringe-based deposition of two-dimensional and three-dimensional polymer scaffolds with a well-defined geometry for application to tissue engineering. Tissue Eng. 8 December (6) (2002) 1089-1098
    • (2002) Tissue Eng. , vol.8 , Issue.December 6 , pp. 1089-1098
    • Vozzi, G.1    Previti, A.2    De Rossi, D.3    Ahluwalia, A.4
  • 34
    • 33646355175 scopus 로고    scopus 로고
    • Characterization of tissue-engineered scaffolds microfabricated with PAM
    • Mariani M., Rosatini F., Vozzi G., Previti A., and Ahluwalia A. Characterization of tissue-engineered scaffolds microfabricated with PAM. Tissue Eng. 12 March (3) (2006) 547-557
    • (2006) Tissue Eng. , vol.12 , Issue.March 3 , pp. 547-557
    • Mariani, M.1    Rosatini, F.2    Vozzi, G.3    Previti, A.4    Ahluwalia, A.5
  • 36
    • 0242332351 scopus 로고    scopus 로고
    • A comparative study of chemical derivatisation methods for spatially differentiated cell adhesion on 2-dimensional microfabricated polymeric matrices
    • Bianchi F., Vozzi G., Pescia C., Domenici C., and Ahluwalia A. A comparative study of chemical derivatisation methods for spatially differentiated cell adhesion on 2-dimensional microfabricated polymeric matrices. J. Biomater. Sci. Polym. Ed. 14 10 (2003) 1077-1096
    • (2003) J. Biomater. Sci. Polym. Ed. , vol.14 , Issue.10 , pp. 1077-1096
    • Bianchi, F.1    Vozzi, G.2    Pescia, C.3    Domenici, C.4    Ahluwalia, A.5
  • 38
    • 0023019005 scopus 로고
    • Use of MTT colorimetric assay to measure cell activation
    • Gerlier D., and Thomasset N. Use of MTT colorimetric assay to measure cell activation. J. Immunol. Methods 94 November 20 (1-2) (1986) 57-63
    • (1986) J. Immunol. Methods , vol.94 , Issue.November 20 1-2 , pp. 57-63
    • Gerlier, D.1    Thomasset, N.2


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