AtmtPNPase is required for multiple aspects of the 18S rRNA metabolism in Arabidopsis thaliana mitochondria

Nucleic Acids Research

Volumn 32, Issue 17, 2004, Pages 5174-5182

  Perrin, Romary ^a   Lange, Heike ^a   Grienenberger, Jean Michel ^a   Gagliardi, Dominique ^a  

^a INST DE BIOL MOLEC DES PLANTES   (France)

Author keywords

[No Author keywords available]

Indexed keywords

EXORIBONUCLEASE; POLYADENYLATED RNA; POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; RNA 18S; ARABIDOPSIS PROTEIN; EXORIBONUCLEASE II; MITOCHONDRIAL POLYNUCLEOTIDE PHOSPHORYLASE, ARABIDOPSIS; MITOCHONDRIAL RNASE II, ARABIDOPSIS; PLANT RNA; RIBONUCLEASE; RNA PRECURSOR; SPACER DNA;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ARABIDOPSIS; ARTICLE; DOWN REGULATION; ENZYME ACTIVITY; MITOCHONDRION; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYADENYLATION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN EXPRESSION; RNA DEGRADATION; RNA METABOLISM; RNA SEQUENCE; WILD TYPE; CHEMISTRY; ENZYMOLOGY; GENETICS; METABOLISM; MOLECULAR GENETICS; PHYSIOLOGY;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

5' UNTRANSLATED REGIONS; ARABIDOPSIS; ARABIDOPSIS PROTEINS; BASE SEQUENCE; DNA, INTERGENIC; DOWN-REGULATION; ENDORIBONUCLEASES; EXORIBONUCLEASES; MITOCHONDRIA; MOLECULAR SEQUENCE DATA; POLYADENYLATION; POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; RNA PRECURSORS; RNA, PLANT; RNA, RIBOSOMAL, 18S;

EID: 4944238979     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh852     Document Type: Article

References (33)

1. Mulligan,R.M., Maloney,A.P. and Walbot,V. (1988) RNA processing and multiple transcription initiation sites result in transcript size heterogeneity in maize mitochondria. Mol. Gen. Genet. 211, 373-380.
2. Maloney,A.P., Traynor,P.L., Levings,C.S., III and Walbot,V. (1989) Identification in maize mitochondrial 26S rRNA of a short 5′ -end sequence possibly involved in transcription initiation and processing. Curr. Genet., 15, 207-212.
3. Finnegan,P.M. and Brown,G.G. (1990) Transcriptional and post-transcriptional regulation of RNA levels in maize mitochondria. Plant Cell, 2, 71-83.
4. Hanic-Joyce,P.J., Spencer,D.F. and Gray,M.W. (1990) In vitro processing of transcripts containing novel tRNA-like sequences ('t-elements') encoded by wheat mitochondrial DNA. Plant Mol. Biol. 15, 551-559.
5. Coulthart,M.B., Spencer,D.F. and Gray,M.W. (1993) Comparative analysis of a recombining-repeat-sequence family in the mitochondrial genomes of wheat (Triticum aestivum L.) and rye (Secale cereale L.). Curr. Genet., 23, 255-264.
6. Srivastava,A.K. and Schlessinger,D. (1990) Mechanism and regulation of bacterial ribosomal RNA processing. Annu. Rev. Microbiol., 44, 105-129.
7. Butler,J.S. (2002) The yin and yang of the exosome. Trends Cell. Biol., 12, 90-96.
8. Granneman,S. and Baserga,S.J. (2004) Ribosome biogenesis: of knobs and RNA processing. Exp. Cell. Res., 296, 43-50.
9. Li,Z., Pandit,S. and Deutscher,M.P. (1998) Polyadenylation of stable RNA precursors in vivo. Proc. Natl Acad. Sci. USA, 95, 12158-12162.
10. Schuster,G., Lisitsky,I. and Klaff,P. (1999) Polyadenylation and degradation of mRNA in the chloroplast. Plant Physiol., 120 937-944.
11. Dreyfus,M. and Regnier,P. (2002) The poly(A) tail of mRNAs: bodyguard in eukaryotes, scavenger in bacteria. Cell, 111, 611-613.
12. Ryan,C.M., Militello,K.T. and Read,L.K. (2003) Polyadenylation regulates the stability of Trypanosoma brucei mitochondrial RNAs. J. Biol. Chem., 278, 32753-32762.
13. Gagliardi,D., Stepien,P.P., Temperley,R.J., Lightowlers,R.N. and Chrzanowska-Lightowlers,Z.M. (2004) Messenger RNA stability in mitochondria: different means to an end. Trends Genet., 20, 260-267.
14. Komine,Y., Kwong,L., Anguera,M.C., Schuster,G. and Stem,D.B. (2000) Polyadenylation of three classes of chloroplast RNA in Chlamydomonas reinhadtii. RNA, 6, 598-607.
15. Kuai,L., Fang,F., Butler,J.S. and Sherman,F. (2004) Polyadenylation of rRNA in Saccharomyces cerevisiae. Proc. Natl Acad. Sci. USA, 101, 8581-8586.
16. Perrin,R., Meyer,E.H., Zaepfel,M., Kim,Y.J., Mache,R., Grienenberger,J.M., Gualberto,J.M. and Gagliardi,D. (2004) Two exoribonucleases act sequentially to process mature 3′-ends of atp9 mRNAs in Arabidopsis mitochondria. J. Biol. Chem., 279, 25440-25446.
17. Hayes,R., Kudla,J., Schuster,G., Gabay,L., Maliga,P. and Gruissem,W. (1996) Chloroplast mRNA 3′-end processing by a high molecular weight protein complex is regulated by nuclear encoded RNA binding proteins. EMBO J., 15, 1132-1141.
18. Lisitsky,I., Kotler,A. and Schuster,G. (1997) The mechanism of preferential degradation of polyadenylated RNA in the chloroplast. The exoribonuclease 100RNP/polynucleotide phosphorylase displays high binding affinity for poly(A) sequence. J. Biol. Chem., 272, 17648-17653.
19. Lisitsky,I. and Schuster,G. (1999) Preferential degradation of polyadenylated and polyuridinylated RNAs by the bacterial exoribonuclease polynucleotide phosphorylase. Eur. J. Biochem., 261, 468-474.
20. Walter,M., Kilian,J. and Kudla,J. (2002) PNPase activity determines the efficiency of mRNA 3′-end processing, the degradation of tRNA and the extent of polyadenylation in chloroplasts. EMBO J., 21, 6905-6914.
21. Gagliardi,D. and Leaver,C.J. (1999) Polyadenylation accelerates the degradation of the mitochondrial mRNA associated with cytoplasmic male sterility in sunflower. EMBO J., 18, 3757-3766.
22. Gagliardi,D., Perrin,R., Marechal-Drouard,L., Grienenberger,J.M. and Leaver,C.J. (2001) Plant mitochondrial polyadenylated mRNAs are degraded by a 3′- to 5′ -exoribonuclease activity, which proceeds unimpeded by stable secondary structures. J. Biol. Chem., 276, 43541-43547.
23. Kuhn,J. and Binder,S. (2002) RT-PCR analysis of 5′ to 3′-end-ligated mRNAs identifies the extremities of cox2 transcripts in pea mitochondria. Nucleic Acids Res., 30, 439-446.
24. Lupold,D.S., Caoile,A.G. and Stem,D.B. (1999) Polyadenylation occurs at multiple sites in maize mitochondrial cox2 mRNA and is independent of editing status. Plant Cell, 11, 1565-1578.
25. Kuhn,J., Tengler,U. and Binder,S. (2001) Transcript lifetime is balanced between stabilizing stem-loop structures and degradation-promoting polyadenylation in plant mitochondria. Mol. Cell. Biol., 21, 731-742.
26. Marujo,P.E., Hajnsdorf,E., Le Derout,J., Andrade,R., Arraiano,C.M. and Regnier,P. (2000) RNase II removes the oligo(A) tails that destabilize the rpsO mRNA of Escherichia coli. RNA, 6, 1185-1193.
27. Giese,A., Thalheim,C., Brennicke,A. and Binder,S. (1996) Correlation of nonanucleotide motifs with transcript initiation of 18S rRNA genes in mitochondria of pea, potato and Arabidopsis. Mol. Gen. Genet., 252, 429-436.
28. Li,Z. and Deutscher,M.P. (1995) The tRNA processing enzyme RNase T is essential for maturation of 5S RNA. Proc. Natl Acad. Sci. USA, 92, 6883-6886.
29. Li,Z., Pandit,S. and Deutscher,M.P. (1998) 3′ exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli. Proc. Natl Acad. Sci. USA, 95, 2856-2861.
30. Li,Z., Pandit,S. and Deutscher,M.P. (1999) Maturation of 23S ribosomal RNA requires the exoribonuclease RNase T. RNA, 5, 139-146.
31. Cheng,Z.F. and Deutscher,M.P. (2003) Quality control of ribosomal RNA mediated by polynucleotide phosphorylase and RNase R. Proc. Natl Acad. Sci. USA, 100, 6388-6393.
32. Piazza,F., Zappone,M., Sana,M., Briani,F. and Deho,G. (1996) Polynucleotide phosphorylase of Escherichia coli is required for the establishment of bacteriophage P4 immunity. J. Bacteriol., 178, 5513-5521.
33. Briani,F., Del Vecchio,E., Migliorini,D., Hajnsdorf,E., Regnier,P., Ghisotti,D. and Deho,G. (2002) RNase E and polyadenyl polymerase I are involved in maturation of CI RNA, the P4 phage immunity factor. J. Mol. Biol., 318, 321-331.