Maturation of 23S ribosomal RNA requires the exoribonuclease RNase T

RNA

Volumn 5, Issue 1, 1999, Pages 139-146

  Li, Zhongwei ^a   Pandit, Shilpa ^a   Deutscher, Murray P ^a  

^a UNIVERSITY OF MIAMI MILLER SCHOOL OF MEDICINE   (United States)

Author keywords

3' terminus; Polyadenylation; Ribonuclease; RNA processing

Indexed keywords

EXORIBONUCLEASE; RIBONUCLEASE T1; RNA 16S; RNA 23S; RNA 5S; TRANSFER RNA;

ARTICLE; CONTROLLED STUDY; ESCHERICHIA COLI; MOLECULAR RECOGNITION; NONHUMAN; POLYADENYLATION; PRIORITY JOURNAL; PROTEIN RNA BINDING; RIBOSOME; RNA CLEAVAGE;

BLOTTING, NORTHERN; ESCHERICHIA COLI; EXORIBONUCLEASES; RIBOSOMES; RNA PRECURSORS; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, BACTERIAL; RNA, RIBOSOMAL, 23S;

ESCHERICHIA COLI;

EID: 0032951885     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838299981669     Document Type: Article

References (32)

1. Bram RJ, Young RA, Steitz JA. 1980. The ribonuclease III site flanking 23S sequences in the 30S ribosomal precursor RNA of E. coli. Cell 19:393-401.
2. Cheng ZF, Zuo Y, Li Z, Rudd KE, Deutscher MP. 1998. The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R. J Biol Chem 273: 14077-14080.
3. Deutscher MP. 1993a. RNA maturation nucleases. In: Linn SM, Lloyd RS, Roberts RJ, eds. Nucleases. Plainview, New York: Cold Spring Harbor Laboratory Press, pp 377-406.
4. Deutscher MP. 1993b. Promiscuous exoribonucleases of Escherichia coli. J Bacteriol 175:4577-4583.
5. Deutscher MP, Marlor CW. 1985. Purification and characterization of Escherichia coli RNase T. J Biol Chem 260:7067-7071.
6. Deutscher MP, Marlor CW, Zaniewski R. 1985. RNase T is responsible for the end turnover of tRNA in Escherichia coli. Proc Natl Acad Sci USA 82:6427-6430.
7. Inoue H, Hayase Y, Iwai S, Ohtsuka E. 1987. Sequence-dependent hydrolysis of RNA using modified oligonucleotide splints and RNase H. FEBS Lett 215:327-330.
8. Kasai T, Gupta RS, Schlessinger D. 1977. Exoribonucleases in wild-type Escherichia coli and RNase II-deficient mutants. J Biol Chem 252:8950-8956.
9. Kelly KO, Deutscher MP. 1992. The presence of only one of five exoribonucleases is sufficient to support the growth of Escherichia coli. J Bacteriol 174:6682-6684.
10. King TC, Sirdeshmukh R, Schlessinger D. 1984. RNase III cleavage is obligate for maturation but not for function of Escherichia coli pre-23S rRNA. Proc Natl Acad Sci USA 81:185-188.
11. Lapham J, Crothers DM. 1996. RNase H cleavage for processing of in vitro transcribed RNA for NMR studies and RNA ligation. RNA 2:289-296.
12. Lapham J, Yu YT, Shu MD, Steitz JA, Crothers DM. 1997. The position of site-directed cleavage of RNA using RNase H and 2'-O-methyl oligonucleotides is dependent on the enzyme source. RNA 3:950-951.
13. Li Z, Deutscher MP. 1994. The role of individual exoribonucleases in processing at the 3' end of Escherichia coli tRNA precursors. J Biol Chem 269:6064-6071.
14. Li Z, Deutscher MP. 1995. The tRNA processing enzyme RNase T is essential for maturation of 5S RNA. Proc Natl Acad Sci USA 92:6883-6886.
15. Li Z, Deutscher MP. 1996. Maturation pathways for E. coli tRNA precursors: A random multienzyme process in vivo. Cell 86:503-512.
16. Li Z, Pandit S, Deutscher MP. 1998a. 3′ exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli. Proc Natl Acad Sci USA 95:2856-2861.
17. Li Z, Pandit S, Deutscher MP. 1998b. Polyadenylation of stable RNA precursors in vivo. Proc Natl Acad Sci USA 95:12158-12162.
18. Li Z, Zhan L, Deutscher MP. 1996. The role of individual cysteine residues in the activity of Escherichia coli RNase T. J Biol Chem 271:1127-1132.
19. Liu JD, Parkinson JS. 1989. Genetics and sequence analysis of the pcnB locus, an Escherichia coli gene involved in plasmid copy number control. J Bacteriol 171:1254-1261.
20. Nicholson AW. 1997. Escherichia coli ribonucleases: Paradigms for understanding cellular RNA metabolism and regulation. In: D'Alessio G & Riordan JF, eds. Ribonucleases: Structures and functions. New York: Academic Press. pp 1-49.
21. Padmanabha KP, Deutscher MP. 1991. RNase T affects Escherichia coli growth and recovery from metabolic stress. J Bacteriol 173: 1376-1381.
22. Reuven NB, Deutscher MP. 1993. Multiple exoribonucleases are required for the 3′ processing of Escherichia coli tRNA precursors in vivo. FASEB J 7:143-148.
23. Sarkar N. 1997. Polyadenylation of mRNA in prokaryotes. Ann Rev Biochem 66:173-197.
24. Sirdeshmukh R, Schlessinger D. 1985a. Ordered processing of Escherichia coli 23S rRNA in vitro. Nucleic Acids Res 13:5041-5054.
25. Sirdeshmukh R, Schlessinger D. 1985b. Why is processing of 23S ribosomal RNA in Escherichia coli not obligate for its function? J Mol Biol 186:669-672.
26. Srivastava AK, Schlessinger D. 1988. Coregulation of processing and translation: Mature 5′ termini of Escherichia coli 23S ribosomal RNA form in polysomes. Proc Natl Acad Sci USA 85:7144-7148.
27. Srivastava AK, Schlessinger D. 1990a. Mechanism and regulation of bacterial ribosomal RNA processing. Ann Rev Microbiol 44:105-129.
28. Srivastava AK, Schlessinger D. 1990b. Preparation of extracts and assay of ribosomal RNA maturation in Escherichia coli. Methods Enzymol 181:355-366.
29. Srivastava AK, Schlessinger D. 1991. Structure and organization of ribosomal DNA. Biochimie 73:631-638.
30. Wachi M, Umitsuki G, Nagai K. 1997. Functional relationship between Escherichia coli RNase E and the CafA protein. Mol Gen Genet 253:515-519.
31. Young RA, Steitz JA. 1978. Complementary sequences 1700 nucleotides apart form a ribonuclease III cleavage site in Escherichia coli ribosomal precursor RNA. Proc Natl Acad Sci USA 75:3593-3597.
32. Yu YT, Shu MD, Steitz JA. 1997. A new method for detecting sites of 2'-O-methylation in RNA molecules. RNA 3:324-331.