Light-regulated RNA-small molecule interactions

ChemBioChem

Volumn 9, Issue 8, 2008, Pages 1225-1228

  Young, Douglas D ^a   Deiters, Alexander ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

Aptamer; Light; Riboswitch; RNA; Spiropyran

Indexed keywords

APTAMER; MEROCYANINE; SMALL NUCLEAR RIBONUCLEOPROTEIN; SPIRO COMPOUND; SPIROPYRAN; UNCLASSIFIED DRUG; BENZOPYRAN DERIVATIVE; INDOLE DERIVATIVE; MEROCYANINE DYE; NITRO DERIVATIVE; PYRIMIDINONE DERIVATIVE; RNA;

ARTICLE; GENE CONTROL; GENE SWITCHING; INTERACTIONS WITH RNA; PRIORITY JOURNAL; PROTEIN ENGINEERING; RNA BINDING; ULTRAVIOLET RADIATION; CHEMICAL STRUCTURE; CHEMISTRY; ENZYME SPECIFICITY; ISOLATION AND PURIFICATION; LIGHT; PHOTOCHEMISTRY; SURFACE PLASMON RESONANCE;

APTAMERS, NUCLEOTIDE; BENZOPYRANS; INDOLES; LIGHT; MOLECULAR STRUCTURE; NITRO COMPOUNDS; PHOTOCHEMISTRY; PYRIMIDINONES; RNA; SUBSTRATE SPECIFICITY; SURFACE PLASMON RESONANCE;

EID: 49249100309     PISSN: 14394227     EISSN: 14397633     Source Type: Journal    
DOI: 10.1002/cbic.200800051     Document Type: Article

References (62)

1. a) D. D. Young, A. Deiters, Org. Biomol. Chem. 2007, 5, 999-1005
2. b) I. Dmochowski, X. J. Tang, Mol. Biosyst. 2007, 3, B15
3. c) G. Mayer, A. Heckel, Angew. Chem. 2006, 118, 5020-5042
4. G. Mayer, A. Heckel, Angew. Chem. Int. Ed. 2006, 45, 4900-4921
5. d) K. Curley, D. S. Lawrence, Curr. Opin. Chem. Biol. 1999, 3, 84-88
6. e) S. R. Adams, R. Y. Tsien, Annu. Rev. Physiol. 1993, 55, 755-784.
7. a) D. D. Young, A. Deiters, Angew. Chem. 2007, 119, 4368-4370
8. D. D. Young, A. Deiters, Angew. Chem. Int. Ed. 2007, 46, 4290-4292
9. b) K. H. Link, Y. H. Shi, J. T. Koh, J. Am. Chem. Soc. 2005, 127, 13088-13089
10. c) M. Harada, M. Sisido, J. Hirose, M. Nakanishi, FEBS Lett. 1991, 286, 6-8
11. d) W. Y. Lin, C. Albanese, R. G. Pestell, D. S. Lawrence, Chem. Biol. 2002, 9, 1347-1353
12. e) S. B. Cambridge, D. Geissler, S. Keller, B. Curten, Angew. Chem. 2006, 118, 2287-2289
13. S. B. Cambridge, D. Geissler, S. Keller, B. Curten, Angew. Chem. Int. Ed. 2006, 45, 2229-2231.
14. M. Goard, G. Aakalu, O. D. Fedoryak, C. Quinonez, J. St Julien, S. J. Poteet, E. M. Schuman, T. M. Dore, Chem. Biol. 2005, 12, 685-693.
15. a) N. Wu, A. Deiters, T. A. Cropp, D. King, P. G. Schultz, J. Am. Chem. Soc. 2004, 126, 14306-14307
16. b) A. Deiters, D. Groff, Y. H. Ryu, J. M. Xie, P. G. Schultz, Angew. Chem. 2006, 118, 2794-2797
17. A. Deiters, D. Groff, Y. H. Ryu, J. M. Xie, P. G. Schultz, Angew. Chem. Int. Ed. 2006, 45, 2728-2731
18. c) E. A. Lemke, D. Summerer, B. H. Geierstanger, S. M. Brittain, P. G. Schultz, Nat. Chem. Biol. 2007, 3, 769-772.
19. a) I. A. Shestopalov, S. Sinha, J. K. Chen, Nat. Chem. Biol. 2007, 3, 650-651
20. b) X. J. Tang, S. Maegawa, E. S. Weinberg, I. J. Dmochowski, J. Am. Chem. Soc. 2007, 129, 11000-11001
21. c) X. Tang, J. Swaminathan, A. M. Gewirtz, I. J. Dmochowski, Nucleic Acids Res. 2008, 36, 559-569.
22. a) H. Lusic, D. D. Young, M. O. Lively, A. Deiters, Org. Lett. 2007, 9, 1903-1906
23. b) A. Heckel, G. Mayer, J. Am. Chem. Soc. 2005, 127, 822-823
24. c) X. Tang, I. J. Dmochowski, Org. Lett. 2005, 7, 279-282.
25. a) V. Mikat, A. Heckel, RNA 2007, 13, 2341-2347
26. b) S. Shah, S. Rangarajan, S. H. Friedman, Angew. Chem. 2005, 117, 1352-1356
27. S. Shah, S. Rangarajan, S. H. Friedman, Angew. Chem. Int. Ed. 2005, 44, 1328-1332
28. c) H. Ando, T. Furuta, R. Y. Tsien, H. Okamoto, Nat. Genet. 2001, 28, 317-325.
29. a) D. D. Young, A. Deiters, Bioorg. Med. Chem. Lett. 2006, 16, 2658-2661
30. b) J. Xia, X. P. Huang, R. Sreekumar, J. W. Walker, Bioorg. Med. Chem. Lett. 1997, 7, 1243-1248
31. c) C. L. Berger, E. C. Svensson, D. D. Thomas, Proc. Natl. Acad. Sci. USA 1989, 86, 8753-8757.
32. S. J. Salser, C. Kenyon, Development 1996, 122, 1651-1661.
33. C. Dugave, L. Demange, Chem. Rev. 2003, 103, 2475-2532.
34. a) O. Pieroni, A. Fissi, N. Angelini, F. Lenci, Acc. Chem. Res. 2001, 34, 9-17
35. b) I. Willner, Acc. Chem. Res. 1997, 30, 347-356
36. c) G. S. Kumar, D. C. Neckers, Chem. Rev. 1989, 89, 1915-1925.
37. G. Berkovic, V. Krongauz, V. Weiss, Chem. Rev. 2000, 100, 1741-1753.
38. a) M. Bose, D. Groff, J. M. Xie, E. Brustad, P. G. Schultz, J. Am. Chem. Soc. 2006, 128, 388-389
39. b) Y. Liu, D. Sen, J. Mol. Biol. 2004, 341, 887-892
40. c) M. Banghart, K. Borges, E. Isacoff, D. Trauner, R. H. Kramer, Nat. Neurosci. 2004, 7, 1381-1386
41. d) V. Borisenko, D. C. Burns, Z. H. Zhang, G. A. Woolley, J. Am. Chem. Soc. 2000, 122, 6364-6370
42. e) I. Willner, S. Rubin, A. Riklin, J. Am. Chem. Soc. 1991, 113, 3321-3325.
43. a) G. Bauer, B. Suess, J. Biotechnol. 2006, 124, 4-11
44. b) M. Mandal, R. R. Breaker, Nat. Rev. Mol. Cell Biol. 2004, 5, 451-463
45. c) W. C. Winkler, R. R. Breaker, ChemBioChem 2003, 4, 1024-1032.
46. a) T. Sakata, Y. L. Yan, G. Marriott, J. Org. Chem. 2005, 70, 2009-2013
47. b) S. Giordani, M. A. Cejas, F. M. Raymo, Tetrahedron 2004, 60, 10973-10981
48. c) H. Asanuma, K. Shirasuka, T. Yoshida, T. Takarada, X. G. Liang, M. Komiyama, Chem. Lett. 2001, 108-109.
49. F. M. Raymo, Adv. Mater. 2002, 14, 401.
50. F. M. Raymo, S. Giordani, J. Am. Chem. Soc. 2001, 123, 4651-4652.
51. a) F. J. Isaacs, D. J. Dwyer, J. J. Collins, Nat. Biotechnol. 2006, 24, 545-554
52. b) T. Hermann, D. J. Patel, Science 2000, 287, 820-825
53. c) M. Famulok, Curr. Opin. Struct. Biol. 1999, 9, 324-329.
54. a) S. E. Osborne, A. D. Ellington, Chem. Rev. 1997, 97, 349-370
55. b) L. Gold, D. Brown, Y. Y. He, T. Shtatland, B. S. Singer, Y. Wu, Proc. Natl. Acad. Sci. USA 1997, 94, 59-64
56. c) L. Gold, B. Polisky, O. Uhlenbeck, M. Yarus, Annu. Rev. Biochem. 1995, 64, 763-797.
57. D. Eulberg, S. Klussmann, ChemBioChem 2003, 4, 979-983.
58. G. Hayashi, M. Hagihara, C. Dohno, K. Nakatani, J. Am. Chem. Soc. 2007, 129, 8678.
59. H. W. Lee, S. G. Robinson, S. Bandyopadhyay, R. H. Mitchel, D. Sen, J. Mol. Biol. 2007, 371, 1163-1173.
60. F. M. Raymo, S. Giordani, A. J. White, D. J. Williams, J. Org. Chem. 2003, 68, 4158-4169.
61. E. Fischer, M. Frankel, R. Wolovsky, J. Chem. Phys. 1955, 23, 1367-1367.
62. M. Mir, I. Katakis, Mol. BioSyst. 2007, 3, 620-622.