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Volumn 371, Issue 5, 2007, Pages 1163-1173

Reversible Photo-regulation of a Hammerhead Ribozyme Using a Diffusible Effector

Author keywords

allosteric; dihydropyrene; hammerhead ribozyme; photo regulation; photo switch

Indexed keywords

APTAMER; DEOXYRIBOZYME; HAMMERHEAD RIBOZYME; PYRENE DERIVATIVE;

EID: 34547585981     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2007.06.042     Document Type: Article
Times cited : (33)

References (37)
  • 1
    • 0037062949 scopus 로고    scopus 로고
    • The chemical repertoire of natural ribozymes
    • Doudna J.A., and Cech T.R. The chemical repertoire of natural ribozymes. Nature 418 (2002) 222-228
    • (2002) Nature , vol.418 , pp. 222-228
    • Doudna, J.A.1    Cech, T.R.2
  • 2
    • 20444502087 scopus 로고    scopus 로고
    • Structure, folding and mechanisms of ribozymes
    • Lilley D.M.J. Structure, folding and mechanisms of ribozymes. Curr. Opin. Struct. Biol. 15 (2005) 313-323
    • (2005) Curr. Opin. Struct. Biol. , vol.15 , pp. 313-323
    • Lilley, D.M.J.1
  • 4
    • 1642586299 scopus 로고    scopus 로고
    • Control of gene expression by a natural metabolite-responsive ribozyme
    • Winkler W.C., Nahvi A., Roth A., Collins J.A., and Breaker R.R. Control of gene expression by a natural metabolite-responsive ribozyme. Nature 428 (2004) 281-286
    • (2004) Nature , vol.428 , pp. 281-286
    • Winkler, W.C.1    Nahvi, A.2    Roth, A.3    Collins, J.A.4    Breaker, R.R.5
  • 5
    • 33748325570 scopus 로고    scopus 로고
    • Structural basis of glmS ribozyme activation by glucosamine-6-phosphate
    • Klein D.J., and Ferre-D'Amare A.R. Structural basis of glmS ribozyme activation by glucosamine-6-phosphate. Science 313 (2006) 1752-1756
    • (2006) Science , vol.313 , pp. 1752-1756
    • Klein, D.J.1    Ferre-D'Amare, A.R.2
  • 6
    • 33750149294 scopus 로고    scopus 로고
    • Characteristics of ligand recognition by a glmS self-cleaving ribozyme
    • Lim J., Grove B.C., Roth A., and Breaker R.R. Characteristics of ligand recognition by a glmS self-cleaving ribozyme. Angew. Chem. Int. Ed. Engl. 45 (2006) 6689-6693
    • (2006) Angew. Chem. Int. Ed. Engl. , vol.45 , pp. 6689-6693
    • Lim, J.1    Grove, B.C.2    Roth, A.3    Breaker, R.R.4
  • 7
    • 33846279049 scopus 로고    scopus 로고
    • Structural investigation of the GlmS ribozyme bound to its catalytic cofactor
    • Cochrane J.C., Lipchock S.V., and Strobel S.A. Structural investigation of the GlmS ribozyme bound to its catalytic cofactor. Chem. Biol. 14 (2007) 97-105
    • (2007) Chem. Biol. , vol.14 , pp. 97-105
    • Cochrane, J.C.1    Lipchock, S.V.2    Strobel, S.A.3
  • 8
    • 0031171217 scopus 로고    scopus 로고
    • Rational design of allosteric ribozymes
    • Tang J., and Breaker R.R. Rational design of allosteric ribozymes. Chem Biol. 4 (1997) 453-459
    • (1997) Chem Biol. , vol.4 , pp. 453-459
    • Tang, J.1    Breaker, R.R.2
  • 9
    • 0038352215 scopus 로고    scopus 로고
    • Engineered catalytic RNA and DNA : new biochemical tools for drug discovery and design
    • Steele D., Kertsburg A., and Soukup G.A. Engineered catalytic RNA and DNA : new biochemical tools for drug discovery and design. Am. J. Pharmacogenomics 3 (2003) 131-144
    • (2003) Am. J. Pharmacogenomics , vol.3 , pp. 131-144
    • Steele, D.1    Kertsburg, A.2    Soukup, G.A.3
  • 10
    • 11144330098 scopus 로고    scopus 로고
    • Natural and engineered nucleic acids as tools to explore biology
    • Breaker R.R. Natural and engineered nucleic acids as tools to explore biology. Nature 432 (2004) 838-845
    • (2004) Nature , vol.432 , pp. 838-845
    • Breaker, R.R.1
  • 11
    • 17144380787 scopus 로고    scopus 로고
    • Allosteric aptamers and aptazymes as probes for screening approaches
    • Famulok M. Allosteric aptamers and aptazymes as probes for screening approaches. Curr. Opin. Mol. Ther. 7 (2005) 137-143
    • (2005) Curr. Opin. Mol. Ther. , vol.7 , pp. 137-143
    • Famulok, M.1
  • 12
    • 0034655587 scopus 로고    scopus 로고
    • Design and optimization of effector-activated ribozyme ligases
    • Robertson M.P., and Ellington A.D. Design and optimization of effector-activated ribozyme ligases. Nucl. Acids Res. 28 (2000) 1751-1759
    • (2000) Nucl. Acids Res. , vol.28 , pp. 1751-1759
    • Robertson, M.P.1    Ellington, A.D.2
  • 13
    • 0036849338 scopus 로고    scopus 로고
    • A versatile communication module for controlling RNA folding and catalysis
    • Kertsburg A., and Soukup G.A. A versatile communication module for controlling RNA folding and catalysis. Nucl. Acids Res. 30 (2002) 4599-4606
    • (2002) Nucl. Acids Res. , vol.30 , pp. 4599-4606
    • Kertsburg, A.1    Soukup, G.A.2
  • 14
    • 0032125579 scopus 로고    scopus 로고
    • Caged RNA: photo-control of a ribozyme reaction
    • Chaulk S.G., and MacMillan A.M. Caged RNA: photo-control of a ribozyme reaction. Nucl. Acids Res. 26 (1998) 3173-3178
    • (1998) Nucl. Acids Res. , vol.26 , pp. 3173-3178
    • Chaulk, S.G.1    MacMillan, A.M.2
  • 15
    • 5644237711 scopus 로고    scopus 로고
    • Triggering DNAzymes with light: a photoactive C8 thioether-linked adenosine
    • Ting R., Lermer L., and Perrin D.M. Triggering DNAzymes with light: a photoactive C8 thioether-linked adenosine. J. Am. Chem. Soc. 126 (2004) 12720-12721
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 12720-12721
    • Ting, R.1    Lermer, L.2    Perrin, D.M.3
  • 16
    • 33645881343 scopus 로고    scopus 로고
    • Photochemical hammerhead ribozyme activation
    • Young D.D., and Deiters A. Photochemical hammerhead ribozyme activation. Bioorg. Med. Chem. Letters 16 (2006) 2658-2661
    • (2006) Bioorg. Med. Chem. Letters , vol.16 , pp. 2658-2661
    • Young, D.D.1    Deiters, A.2
  • 17
    • 0642375842 scopus 로고    scopus 로고
    • Photo-switchable biomaterials: en route to optobioelectronic systems
    • Willner I. Photo-switchable biomaterials: en route to optobioelectronic systems. Accts Chem. Res. 30 (1997) 347-356
    • (1997) Accts Chem. Res. , vol.30 , pp. 347-356
    • Willner, I.1
  • 18
    • 33745294757 scopus 로고    scopus 로고
    • Azobenzene as conformational switch in model peptides
    • Renner C., and Moroder L. Azobenzene as conformational switch in model peptides. ChemBiochem 7 (2006) 868-878
    • (2006) ChemBiochem , vol.7 , pp. 868-878
    • Renner, C.1    Moroder, L.2
  • 19
    • 22144469784 scopus 로고    scopus 로고
    • Reversible molecular photo-switches: a key technology for nanoscience and fluorescence imaging
    • Sauer M. Reversible molecular photo-switches: a key technology for nanoscience and fluorescence imaging. Proc. Natl Acad. Sci. USA 102 (2005) 9433-9444
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 9433-9444
    • Sauer, M.1
  • 20
    • 0037433514 scopus 로고    scopus 로고
    • Synthesis and photochromic properties of molecules containing [e]-annelated dihydropyrenes
    • Mitchell R.H., et al. Synthesis and photochromic properties of molecules containing [e]-annelated dihydropyrenes. J. Am. Chem. Soc. 125 (2003) 2974-2988
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 2974-2988
    • Mitchell, R.H.1
  • 21
    • 0033549733 scopus 로고    scopus 로고
    • Photoregulation of the formation and dissociation of a DNA duplex by using the cis-trans isomerization of azobenzene
    • Asanuma H., Ito T., Yoshida T., Liang X., and Komiyama M. Photoregulation of the formation and dissociation of a DNA duplex by using the cis-trans isomerization of azobenzene. Angew Chem. Int. Ed. Engl. 38 (1999) 2393-2395
    • (1999) Angew Chem. Int. Ed. Engl. , vol.38 , pp. 2393-2395
    • Asanuma, H.1    Ito, T.2    Yoshida, T.3    Liang, X.4    Komiyama, M.5
  • 22
    • 18544371852 scopus 로고    scopus 로고
    • Photocontrol of DNA duplex formation by using azobenzene-bearing oligonucleotides
    • Asanuma H., Liang X., Yoshida T., and Komiyama M. Photocontrol of DNA duplex formation by using azobenzene-bearing oligonucleotides. ChemBiochem 2 (2001) 39-44
    • (2001) ChemBiochem , vol.2 , pp. 39-44
    • Asanuma, H.1    Liang, X.2    Yoshida, T.3    Komiyama, M.4
  • 23
    • 3843088438 scopus 로고    scopus 로고
    • Light-regulated catalysis by an RNA-cleaving deoxyribozyme
    • Liu Y., and Sen D. Light-regulated catalysis by an RNA-cleaving deoxyribozyme. J. Mol. Biol. 341 (2004) 887-892
    • (2004) J. Mol. Biol. , vol.341 , pp. 887-892
    • Liu, Y.1    Sen, D.2
  • 24
    • 0030498356 scopus 로고    scopus 로고
    • 2+ ion as a cofactor for a novel RNA-cleaving deoxyribozyme
    • 2+ ion as a cofactor for a novel RNA-cleaving deoxyribozyme. Angew. Chem. Int. Ed. Engl. 35 (1996) 2837-2841
    • (1996) Angew. Chem. Int. Ed. Engl. , vol.35 , pp. 2837-2841
    • Faulhammer, D.1    Famulok, M.2
  • 25
    • 0030898510 scopus 로고    scopus 로고
    • A general purpose RNA-cleaving DNA enzyme
    • Santoro S.W., and Joyce G.F. A general purpose RNA-cleaving DNA enzyme. Proc. Natl Acad. Sci. USA 94 (1997) 4262-4266
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 4262-4266
    • Santoro, S.W.1    Joyce, G.F.2
  • 26
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington A.D., and Szostak J.W. In vitro selection of RNA molecules that bind specific ligands. Nature 346 (1990) 818-822
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 27
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk C., and Gold L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249 (1990) 505-510
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 28
    • 0032169981 scopus 로고    scopus 로고
    • DNA-enhanced peroxidase activity of a DNA-aptamer-hemin complex
    • Travascio P., Li Y., and Sen D. DNA-enhanced peroxidase activity of a DNA-aptamer-hemin complex. Chem. Biol. 5 (1998) 505-517
    • (1998) Chem. Biol. , vol.5 , pp. 505-517
    • Travascio, P.1    Li, Y.2    Sen, D.3
  • 29
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucl. Acids Res. 3 (2003) 3406-3415
    • (2003) Nucl. Acids Res. , vol.3 , pp. 3406-3415
    • Zuker, M.1
  • 30
    • 0033565475 scopus 로고    scopus 로고
    • Design of allosteric hammerhead ribozymes activated by ligand-induced structure stabilization
    • Soukup G.A., and Breaker R.R. Design of allosteric hammerhead ribozymes activated by ligand-induced structure stabilization. Structure 7 (1999) 783-791
    • (1999) Structure , vol.7 , pp. 783-791
    • Soukup, G.A.1    Breaker, R.R.2
  • 31
    • 0036089156 scopus 로고    scopus 로고
    • Rationally designed allosteric variants of hammerhead ribozymes responsive to the HIV-1 Tat protein
    • Wang D.Y., and Sen D. Rationally designed allosteric variants of hammerhead ribozymes responsive to the HIV-1 Tat protein. Comb. Chem. High Throughput Screen 5 (2002) 301-312
    • (2002) Comb. Chem. High Throughput Screen , vol.5 , pp. 301-312
    • Wang, D.Y.1    Sen, D.2
  • 32
    • 25844505794 scopus 로고    scopus 로고
    • Competitive regulation of modular allosteric aptazymes by a small molecule and oligonucleotide effector
    • Najafi-Shoushtari S.H., and Famulok M. Competitive regulation of modular allosteric aptazymes by a small molecule and oligonucleotide effector. RNA 11 (2005) 1514-1520
    • (2005) RNA , vol.11 , pp. 1514-1520
    • Najafi-Shoushtari, S.H.1    Famulok, M.2
  • 33
    • 0033616774 scopus 로고    scopus 로고
    • Engineering precision RNA molecular switches
    • Soukup G.A., and Breaker R.R. Engineering precision RNA molecular switches. Proc. Natl Acad. Sci. USA 96 (1999) 3584-3589
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 3584-3589
    • Soukup, G.A.1    Breaker, R.R.2
  • 34
    • 0034640131 scopus 로고    scopus 로고
    • Altering molecular recognition of RNA aptamers by allosteric selection
    • Soukup G.A., Emilsson G.A.M., and Breaker R.R. Altering molecular recognition of RNA aptamers by allosteric selection. J. Mol. Biol. 298 (2000) 623-632
    • (2000) J. Mol. Biol. , vol.298 , pp. 623-632
    • Soukup, G.A.1    Emilsson, G.A.M.2    Breaker, R.R.3
  • 35
    • 0033621140 scopus 로고    scopus 로고
    • RNA aptamers as effective protein antagonists in a multicellular organism
    • Shi H., Hoffman B.E., and Lis J.T. RNA aptamers as effective protein antagonists in a multicellular organism. Proc. Natl Acad. Sci. USA 96 (1999) 10033-10038
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 10033-10038
    • Shi, H.1    Hoffman, B.E.2    Lis, J.T.3
  • 36
    • 0032530444 scopus 로고    scopus 로고
    • Essential role of mitochondrially encoded large rRNA for germ-line formation in Drosophila embryos
    • Iida T., and Kobayashi S. Essential role of mitochondrially encoded large rRNA for germ-line formation in Drosophila embryos. Proc. Natl Acad. Sci. USA 95 (1998) 11274-11278
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 11274-11278
    • Iida, T.1    Kobayashi, S.2
  • 37
    • 0032500736 scopus 로고    scopus 로고
    • Controlling gene expression in living cells through small molecule-RNA interactions
    • Werstuck G., and Green M.R. Controlling gene expression in living cells through small molecule-RNA interactions. Science 282 (1998) 296-298
    • (1998) Science , vol.282 , pp. 296-298
    • Werstuck, G.1    Green, M.R.2


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