메뉴 건너뛰기




Volumn 37, Issue , 2008, Pages 247-263

Crowding effects on diffusion in solutions and cells

Author keywords

Anomalous diffusion; Brownian diffusion; Cell membrane; Cytoplasm; Molecular crowding

Indexed keywords

MEMBRANE PROTEIN; SOLVENT; BIOPOLYMER; LIPID;

EID: 48249124302     PISSN: 1936122X     EISSN: None     Source Type: Book Series    
DOI: 10.1146/annurev.biophys.37.032807.125824     Document Type: Review
Times cited : (564)

References (56)
  • 1
    • 33748520215 scopus 로고    scopus 로고
    • Stochastic simulation of chemical reactions with spatial resolution and single molecule detail
    • Andrews SS, Bray D. 2004. Stochastic simulation of chemical reactions with spatial resolution and single molecule detail. Phys. Biol. 1:137-51
    • (2004) Phys. Biol , vol.1 , pp. 137-151
    • Andrews, S.S.1    Bray, D.2
  • 2
    • 31744436399 scopus 로고    scopus 로고
    • Fluorescence cross-correlation spectroscopy in living cells
    • Bacia K, Kim SA, Schwille P. 2006. Fluorescence cross-correlation spectroscopy in living cells. Nat. Methods 3:83-89
    • (2006) Nat. Methods , vol.3 , pp. 83-89
    • Bacia, K.1    Kim, S.A.2    Schwille, P.3
  • 4
    • 0040307478 scopus 로고
    • Anomalous diffusion in disordered media - statistical mechanisms, models and physical applications
    • Bouchaud JP, Georges A. 1990. Anomalous diffusion in disordered media - statistical mechanisms, models and physical applications. Phys. Rep.-Rev. Sec. Phys. Lett. 195:127-293
    • (1990) Phys. Rep.-Rev. Sec. Phys. Lett , vol.195 , pp. 127-293
    • Bouchaud, J.P.1    Georges, A.2
  • 5
    • 38349048015 scopus 로고    scopus 로고
    • Long-range nonanomalous diffusion of quantum dot-labeled aquaporin-1 water channels in the cell plasma membrane
    • Crane J, Verkman AS. 2008. Long-range nonanomalous diffusion of quantum dot-labeled aquaporin-1 water channels in the cell plasma membrane. Biophys. J. 94:702-13
    • (2008) Biophys. J , vol.94 , pp. 702-713
    • Crane, J.1    Verkman, A.S.2
  • 7
    • 4544381399 scopus 로고    scopus 로고
    • Molecular crowding reduces to a similar extent the diffusion of small solutes and macromolecules: Measurement by fluorescence correlation spectroscopy
    • Dauty E, Verkman AS. 2004. Molecular crowding reduces to a similar extent the diffusion of small solutes and macromolecules: measurement by fluorescence correlation spectroscopy. J. Mol. Recognit. 17:441-47
    • (2004) J. Mol. Recognit , vol.17 , pp. 441-447
    • Dauty, E.1    Verkman, A.S.2
  • 8
    • 14844324003 scopus 로고    scopus 로고
    • Actin cytoskeleton as the principal determinant of size-dependent DNA mobility in cytoplasm
    • Dauty E, Verkman AS. 2005. Actin cytoskeleton as the principal determinant of size-dependent DNA mobility in cytoplasm. J. Biol. Chem. 280:7823-28
    • (2005) J. Biol. Chem , vol.280 , pp. 7823-7828
    • Dauty, E.1    Verkman, A.S.2
  • 9
    • 0033059157 scopus 로고    scopus 로고
    • Diffusion of green fluorescent protein in the aqueous-phase lumen of endoplasmic reticulum
    • Dayel MJ, Hom EFY, Verkman AS. 1999. Diffusion of green fluorescent protein in the aqueous-phase lumen of endoplasmic reticulum. Biophys. J. 76:2843-51
    • (1999) Biophys. J , vol.76 , pp. 2843-2851
    • Dayel, M.J.1    Hom, E.F.Y.2    Verkman, A.S.3
  • 10
    • 32544450348 scopus 로고    scopus 로고
    • Fluorescence correlation spectroscopy simulations of photophysical phenomena and molecular interactions: A molecular dynamics/Monte Carlo approach
    • Dix JA, Hom EFY, Verkman AS. 2006. Fluorescence correlation spectroscopy simulations of photophysical phenomena and molecular interactions: a molecular dynamics/Monte Carlo approach. J. Phys. Chem. B 110:1896-906
    • (2006) J. Phys. Chem. B , vol.110 , pp. 1896-1906
    • Dix, J.A.1    Hom, E.F.Y.2    Verkman, A.S.3
  • 12
    • 28444437064 scopus 로고    scopus 로고
    • Membranes are more mosaic than fluid
    • Engelman DM. 2005. Membranes are more mosaic than fluid. Nature 438:578-80
    • (2005) Nature , vol.438 , pp. 578-580
    • Engelman, D.M.1
  • 13
    • 33750652614 scopus 로고
    • Brownian dynamics with hydrodynamic interactions
    • Ermak DJ, McCammon J. 1978. Brownian dynamics with hydrodynamic interactions. J. Chem. Phys. 69:1352-60
    • (1978) J. Chem. Phys , vol.69 , pp. 1352-1360
    • Ermak, D.J.1    McCammon, J.2
  • 14
    • 0029946890 scopus 로고    scopus 로고
    • Constrained diffusion or immobile fraction on cell surfaces: A new interpretation
    • Feder TJ, BrustMascher I, Slattery JP, Baird B, Webb WW. 1996. Constrained diffusion or immobile fraction on cell surfaces: a new interpretation. Biophys. J. 70:2767-73
    • (1996) Biophys. J , vol.70 , pp. 2767-2773
    • Feder, T.J.1    BrustMascher, I.2    Slattery, J.P.3    Baird, B.4    Webb, W.W.5
  • 16
    • 14844336319 scopus 로고    scopus 로고
    • Visual methods from atoms to cells
    • Goodsell DS. 2005. Visual methods from atoms to cells. Structure 13:347-54
    • (2005) Structure , vol.13 , pp. 347-354
    • Goodsell, D.S.1
  • 17
    • 0037174943 scopus 로고    scopus 로고
    • Diffusion of tricarboxylic acid cycle enzymes in the mitochondrial matrix in vivo. Evidence for restricted mobility of a multienzyme complex
    • Haggie PM, Verkman AS. 2002. Diffusion of tricarboxylic acid cycle enzymes in the mitochondrial matrix in vivo. Evidence for restricted mobility of a multienzyme complex. J. Biol. Chem. 277:40782-88
    • (2002) J. Biol. Chem , vol.277 , pp. 40782-40788
    • Haggie, P.M.1    Verkman, A.S.2
  • 18
    • 0027293090 scopus 로고
    • Macromolecular diffusion in crowded solutions
    • Han JN, Herzfeld J. 1993. Macromolecular diffusion in crowded solutions. Biophys. J. 65:1155-61
    • (1993) Biophys. J , vol.65 , pp. 1155-1161
    • Han, J.N.1    Herzfeld, J.2
  • 19
    • 0037179040 scopus 로고    scopus 로고
    • Colloidal suspensions, Brownian motion, molecular reality: A short history
    • Haw MD. 2002. Colloidal suspensions, Brownian motion, molecular reality: a short history. J. Phys. Condens. Matter 14:7769-79
    • (2002) J. Phys. Condens. Matter , vol.14 , pp. 7769-7779
    • Haw, M.D.1
  • 21
    • 33845901815 scopus 로고    scopus 로고
    • Lipid rafts: At a crossroad between cell biology and physics
    • Jacobson K, Mouritsen OG, Anderson RGW. 2007. Lipid rafts: at a crossroad between cell biology and physics. Nat. Cell Biol. 9:7-14
    • (2007) Nat. Cell Biol , vol.9 , pp. 7-14
    • Jacobson, K.1    Mouritsen, O.G.2    Anderson, R.G.W.3
  • 22
    • 34248197573 scopus 로고    scopus 로고
    • Single particle tracking of complex diffusion in membranes: Simulation and detection of barrier, raft, and interaction phenomena
    • Jin S, Verkman AS. 2007. Single particle tracking of complex diffusion in membranes: simulation and detection of barrier, raft, and interaction phenomena. J. Phys. Chem. B 111:3625-32
    • (2007) J. Phys. Chem. B , vol.111 , pp. 3625-3632
    • Jin, S.1    Verkman, A.S.2
  • 23
    • 0027529545 scopus 로고
    • Determinants of the translational mobility of a small solute in cell cytoplasm
    • Kao HP, Abney JR, Verkman AS. 1993. Determinants of the translational mobility of a small solute in cell cytoplasm. J. Cell Biol. 120:175-84
    • (1993) J. Cell Biol , vol.120 , pp. 175-184
    • Kao, H.P.1    Abney, J.R.2    Verkman, A.S.3
  • 24
    • 17844364513 scopus 로고    scopus 로고
    • Paradigm shift of the plasma membrane concept from the two-dimensional continuum fluid to the partitioned fluid: High-speed single-molecule tracking of membrane molecules
    • Kusumi A, Nakada C, Ritchie K, Murase K, Suzuki K, et al. 2005. Paradigm shift of the plasma membrane concept from the two-dimensional continuum fluid to the partitioned fluid: high-speed single-molecule tracking of membrane molecules. Annu. Rev. Biophys. Biomol. Struct. 34:351-54
    • (2005) Annu. Rev. Biophys. Biomol. Struct , vol.34 , pp. 351-354
    • Kusumi, A.1    Nakada, C.2    Ritchie, K.3    Murase, K.4    Suzuki, K.5
  • 25
    • 11144264728 scopus 로고    scopus 로고
    • Simulated diffusion of phosphorylated CheY through the cytoplasm of Escherichia coli
    • Lipkow K, Andrews SS, Bray D. 2005. Simulated diffusion of phosphorylated CheY through the cytoplasm of Escherichia coli. J. Bacteriol. 187:45-53
    • (2005) J. Bacteriol , vol.187 , pp. 45-53
    • Lipkow, K.1    Andrews, S.S.2    Bray, D.3
  • 26
    • 0033991590 scopus 로고    scopus 로고
    • Cytoarchitecture and physical properties of cytoplasm: Volume, viscosity, diffusion, intracellular surface area
    • Luby-Phelps K. 2000. Cytoarchitecture and physical properties of cytoplasm: volume, viscosity, diffusion, intracellular surface area. Int. Rev. Cytol. 192:189-221
    • (2000) Int. Rev. Cytol , vol.192 , pp. 189-221
    • Luby-Phelps, K.1
  • 28
    • 0036787587 scopus 로고    scopus 로고
    • Apparent subdiffusion inherent to single particle tracking
    • Martin DS, Forstner MB, Kas JA. 2002. Apparent subdiffusion inherent to single particle tracking. Biophys. J. 83:2109-17
    • (2002) Biophys. J , vol.83 , pp. 2109-2117
    • Martin, D.S.1    Forstner, M.B.2    Kas, J.A.3
  • 29
    • 33748804712 scopus 로고    scopus 로고
    • Atomically detailed simulations of concentrated protein solutions: The effects of salt, pH, point mutations, and protein concentration in simulations of 1000-molecule systems
    • McGuffee SR, Elcock AH. 2006. Atomically detailed simulations of concentrated protein solutions: the effects of salt, pH, point mutations, and protein concentration in simulations of 1000-molecule systems. J. Am. Chem. Soc. 128:12098-110
    • (2006) J. Am. Chem. Soc , vol.128 , pp. 12098-12110
    • McGuffee, S.R.1    Elcock, A.H.2
  • 30
    • 0002641421 scopus 로고    scopus 로고
    • The random walk's guide to anomalous diffusion: A fractional dynamics approach
    • Metzler R, Klafter J. 2000. The random walk's guide to anomalous diffusion: a fractional dynamics approach. Phys. Rep.-Rev. Sec. Phys. Lett. 339:1-77
    • (2000) Phys. Rep.-Rev. Sec. Phys. Lett , vol.339 , pp. 1-77
    • Metzler, R.1    Klafter, J.2
  • 31
    • 0024006767 scopus 로고
    • Tracer diffusion of globular-proteins in concentrated protein solutions
    • Muramatsu N, Minton AP. 1988. Tracer diffusion of globular-proteins in concentrated protein solutions. Proc. Natl. Acad. Sci. USA 85:2984-88
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 2984-2988
    • Muramatsu, N.1    Minton, A.P.2
  • 32
    • 0033637148 scopus 로고    scopus 로고
    • Fluorescence intensity multiple distributions analysis: Concurrent determination of diffusion times and molecular brightness
    • Palo K, Metz U, Jager S, Kask P, Gall K. 2000. Fluorescence intensity multiple distributions analysis: concurrent determination of diffusion times and molecular brightness. Biophys. J. 79:2858-66
    • (2000) Biophys. J , vol.79 , pp. 2858-2866
    • Palo, K.1    Metz, U.2    Jager, S.3    Kask, P.4    Gall, K.5
  • 34
    • 0030093975 scopus 로고    scopus 로고
    • Reversible photobleaching of fluorescein conjugates in air-saturated viscous solutions: Singlet and triplet state quenching by tryptophan
    • Periasamy N, Bicknese S, Verkman AS. 1996. Reversible photobleaching of fluorescein conjugates in air-saturated viscous solutions: singlet and triplet state quenching by tryptophan. Photochem. Photobiol. 63:265-71
    • (1996) Photochem. Photobiol , vol.63 , pp. 265-271
    • Periasamy, N.1    Bicknese, S.2    Verkman, A.S.3
  • 35
    • 0031861817 scopus 로고    scopus 로고
    • Analysis of fluorophore diffusion by continuous distributions of diffusion coefficients: Application to photobleaching measurements of multicomponent and anomalous diffusion
    • Periasamy N, Verkman AS. 1998. Analysis of fluorophore diffusion by continuous distributions of diffusion coefficients: application to photobleaching measurements of multicomponent and anomalous diffusion. Biophys. J. 75:557-67
    • (1998) Biophys. J , vol.75 , pp. 557-567
    • Periasamy, N.1    Verkman, A.S.2
  • 36
    • 0012050693 scopus 로고
    • Lateral and rotational diffusion of bacteriorhodopsin in lipid bilayers: Experimental test of the Saffman-Delbrück equations
    • Peters R, Cherry RJ. 1982. Lateral and rotational diffusion of bacteriorhodopsin in lipid bilayers: experimental test of the Saffman-Delbrück equations. Proc. Natl. Acad. Sci. USA 82:4317-21
    • (1982) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 4317-4321
    • Peters, R.1    Cherry, R.J.2
  • 37
    • 34547124343 scopus 로고    scopus 로고
    • Signaling through a G protein-coupled receptor and its corresponding G protein follows a stoichiometrically limited model
    • Philip F, Sengupta P, Scarlata S. 2007. Signaling through a G protein-coupled receptor and its corresponding G protein follows a stoichiometrically limited model. J. Biol. Chem. 282:19203-16
    • (2007) J. Biol. Chem , vol.282 , pp. 19203-19216
    • Philip, F.1    Sengupta, P.2    Scarlata, S.3
  • 38
    • 33751400144 scopus 로고    scopus 로고
    • Lipid diffusion in giant unilamellar vesicles is more than two times faster than in supported phospholipid bilayers under identical conditions
    • Przybylo M, Sykora J, Humpolickova J, Benda A, Zan A, Hof M. 2006. Lipid diffusion in giant unilamellar vesicles is more than two times faster than in supported phospholipid bilayers under identical conditions. Langmuir 22:9096-99
    • (2006) Langmuir , vol.22 , pp. 9096-9099
    • Przybylo, M.1    Sykora, J.2    Humpolickova, J.3    Benda, A.4    Zan, A.5    Hof, M.6
  • 40
    • 0023492928 scopus 로고
    • Lateral diffusion in an archipelago. The effect of mobile obstacles
    • Saxton MJ. 1987. Lateral diffusion in an archipelago. The effect of mobile obstacles. Biophys. J. 52:989-97
    • (1987) Biophys. J , vol.52 , pp. 989-997
    • Saxton, M.J.1
  • 41
    • 0028140412 scopus 로고
    • Anomalous diffusion due to obstacles: A Monte-Carlo study
    • Saxton MJ. 1994. Anomalous diffusion due to obstacles: a Monte-Carlo study. Biophys. J. 66:394-401
    • (1994) Biophys. J , vol.66 , pp. 394-401
    • Saxton, M.J.1
  • 42
    • 0030742748 scopus 로고    scopus 로고
    • Translational diffusion of macromolecule-sized solutes in cytoplasm and nucleus
    • Seksek O, Biwersi J, Verkman AS. 1997. Translational diffusion of macromolecule-sized solutes in cytoplasm and nucleus. J. Cell Biol. 138:131-42
    • (1997) J. Cell Biol , vol.138 , pp. 131-142
    • Seksek, O.1    Biwersi, J.2    Verkman, A.S.3
  • 43
    • 0015514472 scopus 로고
    • The fluid mosaic model of the structure of the cell membrane
    • Singer SJ, Nicolson GL. 1972. The fluid mosaic model of the structure of the cell membrane. Science 175:720-31
    • (1972) Science , vol.175 , pp. 720-731
    • Singer, S.J.1    Nicolson, G.L.2
  • 44
    • 0032998181 scopus 로고    scopus 로고
    • Anomalous diffusion of major histocompatibility complex class I molecules on HeLa cells determined by single particle tracking
    • Smith PR, Morrison IEG, Wilson KM, Fernandez N, Cherry RJ. 1999. Anomalous diffusion of major histocompatibility complex class I molecules on HeLa cells determined by single particle tracking. Biophys. J. 76:3331-44
    • (1999) Biophys. J , vol.76 , pp. 3331-3344
    • Smith, P.R.1    Morrison, I.E.G.2    Wilson, K.M.3    Fernandez, N.4    Cherry, R.J.5
  • 45
    • 0345466367 scopus 로고    scopus 로고
    • Free Brownian motion of individual lipid molecules in biomembranes
    • Sonnleitner A, Schutz GJ, Schmidt T. 1999. Free Brownian motion of individual lipid molecules in biomembranes. Biophys. J. 77:2638-42
    • (1999) Biophys. J , vol.77 , pp. 2638-2642
    • Sonnleitner, A.1    Schutz, G.J.2    Schmidt, T.3
  • 46
    • 33744958820 scopus 로고    scopus 로고
    • Lateral diffusion and percolation in membranes
    • Sung BJ, Yethiraj A. 2006. Lateral diffusion and percolation in membranes. Phys. Rev. Lett. 96:4
    • (2006) Phys. Rev. Lett , vol.96 , pp. 4
    • Sung, B.J.1    Yethiraj, A.2
  • 47
    • 0034805172 scopus 로고    scopus 로고
    • Binding of cross-linked glycosylphosphatidylinositol-anchored proteins to discrete actin-associated sites and cholesterol-dependent domains
    • Suzuki K, Sheetz MP. 2001. Binding of cross-linked glycosylphosphatidylinositol-anchored proteins to discrete actin-associated sites and cholesterol-dependent domains. Biophys. J. 81:2181-89
    • (2001) Biophys. J , vol.81 , pp. 2181-2189
    • Suzuki, K.1    Sheetz, M.P.2
  • 48
    • 0031000601 scopus 로고    scopus 로고
    • Photobleaching recovery and anisotropy decay of green fluorescent protein GFP-S65T in solution and cells: Cytoplasmic viscosity probed by green fluorescent protein translational and rotational diffusion
    • Swaminathan R, Hoang CP, Verkman AS. 1997. Photobleaching recovery and anisotropy decay of green fluorescent protein GFP-S65T in solution and cells: cytoplasmic viscosity probed by green fluorescent protein translational and rotational diffusion. Biophys. J. 72:1900-7
    • (1997) Biophys. J , vol.72 , pp. 1900-1907
    • Swaminathan, R.1    Hoang, C.P.2    Verkman, A.S.3
  • 49
    • 14844321288 scopus 로고    scopus 로고
    • Space in systems biology of signaling pathways - towards intracellular molecular crowding in silico
    • Takahashi K, Arjunan SN, Tomita M. 2005. Space in systems biology of signaling pathways - towards intracellular molecular crowding in silico. FEBS Lett. 579:1783-88
    • (2005) FEBS Lett , vol.579 , pp. 1783-1788
    • Takahashi, K.1    Arjunan, S.N.2    Tomita, M.3
  • 50
    • 33645281476 scopus 로고    scopus 로고
    • Slowed diffusion in tumors revealed by microfiberoptic epifluorescence photobleaching
    • Thiagarajah JR, Kim JK, Magzoub M, Verkman AS. 2006. Slowed diffusion in tumors revealed by microfiberoptic epifluorescence photobleaching. Nat. Methods 3:275-80
    • (2006) Nat. Methods , vol.3 , pp. 275-280
    • Thiagarajah, J.R.1    Kim, J.K.2    Magzoub, M.3    Verkman, A.S.4
  • 51
    • 29244454300 scopus 로고    scopus 로고
    • Green's-function reaction dynamics: A particle-based approach for simulating biochemical networks in time and space
    • van Zon JS, ten Wolde PR. 2005. Green's-function reaction dynamics: a particle-based approach for simulating biochemical networks in time and space. J. Chem. Phys. 123:16
    • (2005) J. Chem. Phys , vol.123 , pp. 16
    • van Zon, J.S.1    ten Wolde, P.R.2
  • 52
    • 0038492661 scopus 로고    scopus 로고
    • Dynamic, yet structured: The cell membrane three decades after the Singer-Nicolson model
    • Vereb G, Szollosi J, Matko J, Nagy P, Farkas T, et al. 2003. Dynamic, yet structured: the cell membrane three decades after the Singer-Nicolson model. Proc. Natl. Acad. Sci. USA 100:8053-58
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 8053-8058
    • Vereb, G.1    Szollosi, J.2    Matko, J.3    Nagy, P.4    Farkas, T.5
  • 53
    • 0037274756 scopus 로고    scopus 로고
    • Diffusion in cells measured by fluorescence recovery after photobleaching
    • Verkman AS. 2003. Diffusion in cells measured by fluorescence recovery after photobleaching. Methods Enzymol. 360:635-48
    • (2003) Methods Enzymol , vol.360 , pp. 635-648
    • Verkman, A.S.1
  • 55
    • 14844331313 scopus 로고    scopus 로고
    • Anomalous subdiffusion is a measure for cytoplasmic crowding in living cells
    • Weiss M, Elsner M, Kartberg F, Nilsson T. 2004. Anomalous subdiffusion is a measure for cytoplasmic crowding in living cells. Biophys. J. 87:3518-24
    • (2004) Biophys. J , vol.87 , pp. 3518-3524
    • Weiss, M.1    Elsner, M.2    Kartberg, F.3    Nilsson, T.4
  • 56
    • 41049090929 scopus 로고    scopus 로고
    • Macromolecular crowding and confinement: Biochemical, biophysical, and potential physiological consequences
    • Zhou H-X, Rivas G, Minton AP. 2008. Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences. Annu. Rev. Biophys. 37:375-97
    • (2008) Annu. Rev. Biophys , vol.37 , pp. 375-397
    • Zhou, H.-X.1    Rivas, G.2    Minton, A.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.