Proteome analysis of abundant proteins in two age groups of early Atlantic cod (Gadus morhua) larvae

Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics

Volumn 3, Issue 3, 2008, Pages 243-250

  Sveinsdóttir, Hólmfrídur ^a   Vilhelmsson, Oddur ^b   Gudmundsdóttir, Ágústa ^a  

^a UNIVERSITY OF ICELAND   (Iceland)

^b UNIVERSITY OF AKUREYRI   (Iceland)

Author keywords

2DE; Atlantic cod larvae; Keratins; MALDI TOF MS; Proteome

Indexed keywords

ALPHA ACTIN; BETA 2 TUBULIN; BETA TUBULIN; ISOPROTEIN; KERATIN; MESSENGER RNA; PROTEOME;

ARTICLE; ATLANTIC COD; CONTROLLED STUDY; DEVELOPMENTAL STAGE; FEEDING BEHAVIOR; LARVAL STAGE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MORTALITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN PROCESSING; SKELETAL MUSCLE; TWO DIMENSIONAL ELECTROPHORESIS;

GADUS MORHUA;

EID: 47949113963     PISSN: 1744117X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cbd.2008.06.001     Document Type: Article

References (73)

1. Ahmed N., and Rice G.E. Strategies for revealing lower abundance proteins in two-dimensional protein maps. J. Chromatogr. 815 (2005) 39-50
2. Aitken A. 14-3-3 proteins: a historic overview. Seminars in Cancer Biology 16 (2006) 162-172
3. Basu N., Todgham A.E., Ackerman P.A., Bibeau M.R., Naano K., Schulte P.M., and Iwama G.K. Heat shock protein genes and their functional significance in fish. Gene 295 (2002) 173-183
4. Birch R., O, 'Byrne C., Booth I., and Cash P. Enrichment of Escherichia coli proteins by column chromatography on reactive dye columns. Proteomics 3 (2003) 764-776
5. Brunet A., Kanai F., Stehn J., Xu J., Sarbassova D., Frangioni J.V., Dalal S.N., DeCaprio J.A., Greenberg M.E., and Yaffe M.B. 14-3-3 transits to the nucleus and participates in dynamic nucleocytoplasmic transport. J. Cell. Biol. 156 (2002) 817-828
6. Campinho M.A., Sweeney G.E., and Power D.M. Regulation of troponin T expression during muscle development in sea bream Sparus auratus Linnaeus: the potential role of thyroid hormones. J. Exp. Biol. 209 (2006) 4751-4767
7. Campinho M., Silva N., Sweeney G., and Power D. Molecular, cellular and histological changes in skin from a larval to an adult phenotype during bony fish metamorphosis. Cell. Tissue. Res. 327 (2007) 267-284
8. Cara J., Aluru N., Moyano F., and Vijayan M. Food-deprivation induces HSP70 and HSP90 protein expression in larval gilthead sea bream and rainbow trout. Comp. Biochem. Physiol. B. 142 (2005) 426-431
9. Cash P., Argo E., and Bruce K. Characterisation of Haemophilus influenzae proteins by two-dimensional gel electrophoresis. Electrophoresis 16 (1995) 135-148
10. Deane E., and Woo N. Ontogeny of thyroid hormones, cortisol, hsp70 and hsp90 during silver sea bream larval development. Life. Sci. 72 (2003) 805-818
11. Deane E.E., and Woo N.Y. Cloning and characterization of the hsp70 multigene family from silver sea bream: modulated gene expression between warm and cold temperature acclimation. Biochem. Biophys. Res. Commun. 330 (2005) 776-783
12. Deane E., Zhou L., and Woo N. Cortisol can be pro- or anti-apoptiotic in sea bream cells: potential role of HSP70 induction for cytoprotction. Mol. Cell. Endocrinol. 259 (2006) 57-64
13. Domanski D., and Helbing C. Analysis of the Rana catesbeiana tadpole tail fin proteome and phosphoproteome during T3-induced apoptosis: identification of a novel type I keratin. BMC. Dev. Biol. 7 (2007) 94-122
14. Einarsdóttir I.E., Silva N., Power D.M., Smáradóttir H., and Björnsson B.T. Thyroid and pituitary gland development from hatching through metamorphosis of a teleost flatfish, the Atlantic halibut. Anat. Embryol. 211 (2006) 47-60
15. Falk-Petersen I. Comparative organ differentiation during early life stages of marine fish. Fish. Shellfish. Immunol. 19 (2005) 397-412
16. Focant B., Collin S., Vandewalle P., and Huriaux F. Expression of myofibrillar proteins and parvalbumin isoforms in white muscle of the developing turbot Scophthalmus maximus (Pisces, Pleuronectiformes). Basic. Appl. Myol. 10 (2000) 269-278
17. Focant B., Mélot F., Collin S., Chikou A., Vandewalle P., and Huriaux F. Muscle parvalbumin isoforms of Clarias gariepinus, Heterobranchus longifilis and Chrysichtys auratus: isolation, characterisation and expression during development. J. Fish. Biol. 54 (1999) 832-851
18. Focant B., Vandewalle P., and Huriaux F. Expression of myofibrillar proteins and pavalbumin isoforms during the development of a flatfish, the common sole Solea solea: comparison with the turbot Scophtalmus maximus. Comp. Biochem. Physiol. B. 135 (2003) 493-502
19. Galloway T.F., Bardal T., Kvam S.N., Dahle S.W., Nesse G., Randøl M., Kjørsvik E., and Andersen Ø. Somite formation and expression of MyoD, myogenin and myosin in Atlantic halibut (Hippoglossus hippoglossus L.) embryos incubated at different temperatures: transient asymmetric expression of MyoD. J. Exp. Biol. 209 (2006) 2432-2441
20. Galloway T., Kjørsvik E., and Kryvi H. Effect of temerature on biability and axial muscle development in embryos and yolk sac larvae of the Northeast Artic cod (Gadus morhua). Mar. Biol. 132 (1998) 559-567
21. Galloway T., Kjørsvik E., and Kryvi H. Muscle growth in yolk sac larvae of the Atlantic halibut as influenced by temperature in the egg and yolk sac stage. J. Fish. Biol. 55 (1999) 26-43
22. Govoni J., Boehlert G., and Watanabe Y. The physiology of digestion in fish larvae. Environ. Biol. Fish. 16 (1986) 59-77
23. Gudmundsdóttir Á., Gudmundsdóttir E., Óskarsson S., Bjarnason J., Eakin A., and Craik C. Isolation and characterization of cDNAs from Atlantic cod encoding two different forms of trypsinogen. Eur. J. Biochem. 217 (1993) 1091-1097
24. Hall T., Smith P., and Johnston I. Temperature and the expression of seven muscle-specific protein genes during embrogenesis in the Atlantic cod Gadus morhua L. J. Exp. Biol. 206 (2003) 3187-3200
25. Huriaux F., Baras E., Vandewalle P., and Focant B. Expression of myofibrillar proteins and parvalbumin isoforms in white muscle of dorada during developmen. J. Fish. Biol. 62 (2003) 774-792
26. Huriaux F., Collin S., Vandewalle P., Philippart J., and Focant B. Characterization of parvalbumin isotypes in white muscle from the barbel and expression during development. J. Fish. Biol. 21 (1997) 821-836
27. Huriaux F., Vandewalle P., Baras E., Legendre M., and Focant B. Myofibrillar proteins in white muscle of the developing African catfish Heterobranchus longifilis (Siluriformes, Clariidae). Fish. Physiol. Biochem. 21 (1999) 287-301
28. Ishida Y., Suzuki K., Utoh R., Obara M., and Yoshizato K. Molecular identification of the skin transformation center of anuran larval skin using genes of Rana adult keratin (RAK) and SPARC as probes. Dev. Growth. Differ. 45 (2003) 515-526
29. Iwama G., Thomas P., Forsyte R., and Vijayan M. Heat shock protein expression in fish. Rev. Fish. Biol. Fish. 8 (1998) 35-56
30. Jensen O. Modification-specific proteomics: characterization of post-translational modifications by mass spectrometry. Curr. Opin. Chem. Biol. 8 (2004) 33-41
31. Jensen O., Wilm M., Shevchenko A., and Mann M. Sample preparation methods for mass spectrometric peptide mapping directly from 2-DE gels. In: Link A.J. (Ed). 2-D proteome analysis protocols (1999), Humana Press, Totowa 513-530
32. Kjørsvik E., Pittman K., and Pavlov D. From fertilisation to the end of metamorphosis - functional development. In: Moksness E., Kjørsvik E., and Olsen Y. (Eds). Culture of cold-water marine fish (2004), Blackwell Publishing Ltd 204-278
33. López J.L. Two-dimensional electrophoresis in proteome expression analysis. J. Chromatogr. 849 (2006) 190-202
34. Lopez J., Marina A., Alvarez G., and Vazquez J. Application of proteomics for fast identification of species-specific peptides from marine species. Proteomics 2 (2002) 1658-1665
35. Martin S., Cash P., Blaney S., and Houlihan D. Proteome analysis of rainbow trout (Onchorhynchus mykiss) liver proteins during short term starvation. Fish. Physiol. Biochem. 24 (2001) 259-270
36. Martin S., Vilhelmsson O., Médale F., Watt P., Kaushik S., and Houlihan D. Proteomic sensitivity to dietary manipulations in rainbow trout. Biochim. Biophys. Acta. 1651 (2003) 17-29
37. Martinez I., and Jakobsen Friis T. Application of proteome analysis to seafood authentication. Proteomics 4 (2004) 347-354
38. Mathisen P., and Miller L. Thyroid hormone induces constitutive keratin gene expression during Xenopus laevis development. Mol. Cell. Biol. 9 (1989) 1823-1831
39. Mathisen P., and Miller L. Thyroid hormone induction of keratin genes: a two-step activation of gene expression during development. Genes. Dev. 1 (1987) 1107-1117
40. Meek S., Lane W., and Piwnica-Worms H. Comprehensive proteomic analysis of interphase and mitotic 14-3-3-binding proteins. J. Biol. Chem. 279 (2004) 32046-32054
41. Micheva K., Vallée A., Beaulieu C., Herman I., and Leclerc N. β-Actin is confined to structures having high capacity of remodelling in developing and adult rat cerebllum. Eur. J. Neurosci. 10 (1998) 3785-3798
42. O'Connell C. Development of organ system in the northern anchovy Engraulis mordax and other teleosts. Am. Zool. 21 (1981) 429-446
43. Oehlmann V., Berger S., Sterner C., and Korsching S. Zebrafish beta tubulin 1 expression is limited to the nervous system throughout development, and in the adult brain is restricted to subset of proliferative regions. Gene. Expr. Patterns. 4 (2004) 191-198
44. Olsson G.B., Jakobsen Friis T., Jensen E., and Cooper M. Metabolic disorders in muscle of farmed Atlantic cod (Gadus morhua). Aquacult. Res. 38 (2007) 1223-1227
45. Osse J., and van den Boogaart J. Fish larvae, development, allometric growth, and the aquatic environment. ICES. Mar. Sci. Symp. 201 (1995) 21-34
46. Otterlei E., Nyhammer G., Folkvord A., and Stefansson S.O. Temperature- and size-dependent growth of larval and early juvenile Atlantic cod (Gadus morhua): a comparative study of Norwegian coastal cod and northeast Arctic cod. Can. J. Fish. Aquat. Sci. 56 (1999) 2099-2111
47. Pauly B., Stiening B., Schade M., Alexandrova O., Zoubek R., David C.N., and Böttger A. Molecular cloning and cellular distribution of two 14-3-3 isoforms from Hydra: 14-3-3 proteins respond to starvation and bind to phosphorylated targets. Exp. Cell. Res. 285 (2003) 15-26
48. Perry S. Vertebrate tropomyosin: distribution, properties and function. J. Mus. Res. Cell. Motil. 22 (2001) 5-49
49. Piñeiro C., Barros-Velázquez J., Sotelo C., and Gallardo J. The use of two-dimensional electrophoresis for the identification of commercial flat fish species. Z. Lebensm. Unters. Forsch. 208 (1999) 342-348
50. Piñeiro C., Vázquez J., Marina A., Barros-Velázquez J., and Gallardo J. Characterization and partial sequencing of species-specific sarcoplasmic polypeptides from commercial hake species by mass spectrometry following two-dimensional electrophoresis. Electrophoresis 22 (2001) 1545-1552
51. Plowman J. The proteomic of keratin proteins. J. Chromatogr. 849 (2007) 181-189
52. Rutberg M., Billiger M., Modig C., and Wallin M. Distribution of acetylated tubulin in cultured cells and tissues from the Atlantic cod (Gadus morhua). Role. of. acetylation. in. cold. adaptation. and. drug. stability. Cell. Biol. Int. 19 (1995) 749-758
53. Rutberg M., Modig C., and Wallin M. Detyrosination of tubulin is not correlated to cold-adaptation of microtubules in cultured cells from the Atlantic cod (Gadus morhua). Histochem. J. 28 (1996) 511-521
54. Sanderson S.L., and Kupferberg S.J. Development and evolution of aquatic larval feeding mechanisms: 301-377. In: Hall B.R., and Wake M.H. (Eds). The origin and evolution of larval forms (1999), Academic Press, London 1-425
55. Schaffeld M., Haberkamp M., Braziulis E., Lieb B., and Markl J. Type II keratin cDNA from the rainbow trout: implications for keratin evolution. Differentiation 70 (2002) 292-299
56. Shevchenko A., Wilm M., Vorm O., and Mann M. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal. Chem. 68 (1996) 850-858
57. Skiftesvik A. Changes in behaviour at onset of exogenous feeding in marine fish larvae. Can. J. Fish. Aquat. Sci. 49 (1992) 1570-1572
58. Sriyam S., Sinchaikul S., Tanipaiboonwong P., Tzao C., Phutrakul S., and Chen S.-T. Enhanced detectability in proteome studies. J. Chromatogr. 849 (2007) 91-104
59. Steinarsson A., and Björnsson B. The effects of temperature and size on growth and mortality of cod larvae. J. Fish. Biol. 55 (1999) 100-109
60. Suzuki K., Sato K., Katsu K., Hayashita H., Bach Kristensen D., and Yoshizato K. Novel Rana keratin genes and their expression during larval to adult epidermal conversion in bullfrog tadpoles. Differention 68 (2001) 44-54
61. Suzuki K., Utoh R., Kotani K., Obara M., and Yoshizato K. Linage of anuran epidermal basal cells and their differentiation potential in relation to metamorphic skin remodeling. Dev. Growth. Differ. 44 (2002) 225-238
62. Sveinsdóttir H., Thorarensen H., and Gudmundsdóttir Á. Involvement of trypsin and chymotrypsin activities in Atlantic cod (Gadus morhua) embryogenesis. Aquaculture 260 (2006) 307-314
63. Tay T., Qingson L., Seow T., Tan K., Hew C., and Gong Z. Proteomic analysis of protein profiles during early development of the zebrafish, Danio rerio. Proteomics 6 (2006) 3176-3188
64. Theilacker G. Starvation-induced mortality of young sea-caught jack mackerel, Trachurus symmetricus, determined with histological and morphological methods. Fish. Bull. 84 (1986) 1-17
65. Tyers M., and Mann M. From genomics to proteomics. Nature 422 (2003) 193-197
66. Uwins C., Deitrich C., Argo E., Stewart E., Davidson I., and Cash P. Growth-induced changes in the proteome of Helicobacter pylori. Electrophoresis 27 (2006) 1136-1146
67. van Hemert M.J., Steensma H.Y., and van Heusden G.P. 14-3-3 proteins: key regulators of cell division, signalling and apoptosis. BioEssays 23 (2001) 936-946
68. Watanabe Y., Kobayashi H., Suzuki K., Kotani K., and Yoshizato K. New epidermal keratin genes from Xenopus laevis: hormonal and regional regulation of their expression during anuran skin metamorphosis. Biochim. Biophys. Acta. 1517 (2001) 339-350
69. Watanabe Y., Tanaka R., Kobayashi H., Utoh R., Suzuki K., Obara M., and Yoshizato K. Metamorphosis-dependent transcriptional regulation of xak-c, a novel Xenopus type I keratin gene. Dev. Dyn. 225 (2002) 561-570
70. Weinberger R., Schevzov G., Jeffrey P., Gordon K., Hill M., and Gunning P. The molecular composition of neuronal microfilaments is spatially and temporally regulated. J. Neurosci. 16 (1996) 238-252
71. Vilhelmsson O., Martin S., Médale F., Kaushik S., and Houlihan D. Dietary plant protein substitution affects hepatic metabolism in rainbow trout (Oncorhynchus mykiss). Br. J. Nutr. 92 (2004) 71-80
72. Wilm M., Shevchenko A., Houthaeve T., Breit S., Schweigerer L., Fotsis T., and Mann M. Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry. Nature 379 (1996) 466-469
73. Zupanc M., Wellbrock U., and Zupanc G. Proteome analysis identifies novel protein candidates involved in regeneration of the cerebellum of teleost fish. Proteomics 6 (2006) 667-696