-
1
-
-
34447521097
-
Correlation of biological activity of phenoxyacetic acids with Hammett substituent constants and partition coefficients
-
Hansch, C.; Maloney, P. P.; Fujita, T.; Muir, R. M. Correlation of biological activity of phenoxyacetic acids with Hammett substituent constants and partition coefficients. Nature 1962, 194, 178-180.
-
(1962)
Nature
, vol.194
, pp. 178-180
-
-
Hansch, C.1
Maloney, P.P.2
Fujita, T.3
Muir, R.M.4
-
2
-
-
0023751431
-
Comparative Molecular Field Analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins
-
Cramer, R. D.; Patterson, D. E.; Bunce, J. D. Comparative Molecular Field Analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins. J. Am. Chem. Soc. 1988, 110, 5959-5967.
-
(1988)
J. Am. Chem. Soc
, vol.110
, pp. 5959-5967
-
-
Cramer, R.D.1
Patterson, D.E.2
Bunce, J.D.3
-
3
-
-
0021871375
-
A computational procedure for determining energetically favorable binding sites on biologically important macromolecules
-
Goodford, P. J. A computational procedure for determining energetically favorable binding sites on biologically important macromolecules. J. Med. Chem. 1985, 28, 849-857.
-
(1985)
J. Med. Chem
, vol.28
, pp. 849-857
-
-
Goodford, P.J.1
-
4
-
-
0037142339
-
Suitability of molecular descriptors for database mining. A comparative analysis
-
Cruciani, G.; Pastor, M.; Mannhold, R. Suitability of molecular descriptors for database mining. A comparative analysis. J. Med. Chem. 2002, 45, 2685-2694.
-
(2002)
J. Med. Chem
, vol.45
, pp. 2685-2694
-
-
Cruciani, G.1
Pastor, M.2
Mannhold, R.3
-
5
-
-
85018917153
-
3D-QSAR Using the GRID/GOLPE Approach
-
1st ed, Wiley-VCH Verlag GmbH & Co. KGaA: Weinheim, Germany
-
Sippl, W.; Cruciani, G. 3D-QSAR Using the GRID/GOLPE Approach. In Molecular interaction fields. Application in drug discovery and ADMEprediction, 1st ed.; Wiley-VCH Verlag GmbH & Co. KGaA: Weinheim, Germany, 2006; Vol. 27, pp 145-165.
-
(2006)
Molecular interaction fields. Application in drug discovery and ADMEprediction
, vol.27
, pp. 145-165
-
-
Sippl, W.1
Cruciani, G.2
-
6
-
-
0035210959
-
Automatic generation of alignments for 3D-QSAR analyses
-
Jewell, N. E.; Turner, D. B.; Willett, P.; Sexton, G. J. Automatic generation of alignments for 3D-QSAR analyses. J. Mol. Graphics Modell. 2001, 20, 111-121.
-
(2001)
J. Mol. Graphics Modell
, vol.20
, pp. 111-121
-
-
Jewell, N.E.1
Turner, D.B.2
Willett, P.3
Sexton, G.J.4
-
7
-
-
33244493582
-
A program to flexibly align molecules
-
Cho, S. J.; Sun, Y. FLAME: A program to flexibly align molecules. J. Chem. Inf. Model. 2006, 46, 298-306.
-
(2006)
J. Chem. Inf. Model
, vol.46
, pp. 298-306
-
-
Cho, S.J.1
Sun2
FLAME, Y.3
-
8
-
-
37249077414
-
Consensus adaptation of fields for molecular comparison (AFMoC) models incorporate ligand and receptor conformational variability into tailor-made scoring functions
-
Breu, B.; Silber, K.; Gohlke, H. Consensus adaptation of fields for molecular comparison (AFMoC) models incorporate ligand and receptor conformational variability into tailor-made scoring functions. J. Chem. Inf. Model. 2007, 47, 2383-2400.
-
(2007)
J. Chem. Inf. Model
, vol.47
, pp. 2383-2400
-
-
Breu, B.1
Silber, K.2
Gohlke, H.3
-
10
-
-
0038724207
-
The importance of being earnest: Validation is the absolute essential for successful application and interpretation of QSPR models
-
Tropsha, A.; Grammatica, P.; Gombar, V. J. The importance of being earnest: validation is the absolute essential for successful application and interpretation of QSPR models. QSAR Comb. Sci. 2003, 22, 69-77.
-
(2003)
QSAR Comb. Sci
, vol.22
, pp. 69-77
-
-
Tropsha, A.1
Grammatica, P.2
Gombar, V.J.3
-
11
-
-
0027930292
-
Compass: Predicting biological activities from molecular surface properties: Performance comparisons on a steroid benchmarks
-
Jain, A. N.; Koile, K.; Chapman, D. Compass: predicting biological activities from molecular surface properties: Performance comparisons on a steroid benchmarks. J. Med. Chem. 1994, 37, 2315-2327.
-
(1994)
J. Med. Chem
, vol.37
, pp. 2315-2327
-
-
Jain, A.N.1
Koile, K.2
Chapman, D.3
-
12
-
-
0001171748
-
MIMIC: A molecularfield matching program. Exploiting applicability of molecular surface approaches
-
Mestres, J.; Rohrer, D. G. C.; Maggiora, G. MIMIC: a molecularfield matching program. Exploiting applicability of molecular surface approaches. J. Comput. Chem. 1997, 18, 934-954.
-
(1997)
J. Comput. Chem
, vol.18
, pp. 934-954
-
-
Mestres, J.1
Rohrer, D.G.C.2
Maggiora, G.3
-
13
-
-
0036136868
-
Consensus scoring for ligand/protein interactions
-
Clark, R. D.; Strizhev, A.; Leonard, J. M.; Blake, J. F.; Matthew, J. B. Consensus scoring for ligand/protein interactions. J. Mol. Graphics Modell. 2002, 20, 281-295.
-
(2002)
J. Mol. Graphics Modell
, vol.20
, pp. 281-295
-
-
Clark, R.D.1
Strizhev, A.2
Leonard, J.M.3
Blake, J.F.4
Matthew, J.B.5
-
14
-
-
0036022960
-
Further development and validation of empirical scoring functions for structure-based binding affinity prediction
-
Wang, R.; Lai, L.; Wang, S. Further development and validation of empirical scoring functions for structure-based binding affinity prediction. J. Comput.-Aided Mol. Des. 2002, 16, 11-26.
-
(2002)
J. Comput.-Aided Mol. Des
, vol.16
, pp. 11-26
-
-
Wang, R.1
Lai, L.2
Wang, S.3
-
15
-
-
26944484425
-
Modeling ligand-receptor interaction for some MHC class II HLA-DR4 peptide mimetic inhibitors using several molecular docking and 3D QSAR techniques
-
Wei, H.; Tsai, K.; Lin, T. Modeling ligand-receptor interaction for some MHC class II HLA-DR4 peptide mimetic inhibitors using several molecular docking and 3D QSAR techniques. J. Chem. Inf. Model. 2005, 45, 1343-1351.
-
(2005)
J. Chem. Inf. Model
, vol.45
, pp. 1343-1351
-
-
Wei, H.1
Tsai, K.2
Lin, T.3
-
16
-
-
33244484838
-
Evolutionary of binary QSAR models derived from LUDI and MOE scoring functions for structure based virtual screening
-
Prathipati, P.; Saxena, A. K. Evolutionary of binary QSAR models derived from LUDI and MOE scoring functions for structure based virtual screening. J. Chem. Inf. Model. 2006, 46, 39-51.
-
(2006)
J. Chem. Inf. Model
, vol.46
, pp. 39-51
-
-
Prathipati, P.1
Saxena, A.K.2
-
17
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhatt, N.; Shindyalov, I. N.; Bourne, P. E. The Protein Data Bank. Nucleic Acid Res. 2000, 28, 235-242.
-
(2000)
Nucleic Acid Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhatt, N.5
Shindyalov, I.N.6
Bourne, P.E.7
-
18
-
-
37249073324
-
Screening of matrix metalloproteinases available from the PDB: Insights into biological functions, domain organization and zinc binding groups
-
Nicolotti, O.; Miscioscia, T. F.; Leonetti, F.; Muncipinto, G.; Carotti, A. Screening of matrix metalloproteinases available from the PDB: insights into biological functions, domain organization and zinc binding groups. J. Chem. Inf. Model. 2007, 47, 2439-2448.
-
(2007)
J. Chem. Inf. Model
, vol.47
, pp. 2439-2448
-
-
Nicolotti, O.1
Miscioscia, T.F.2
Leonetti, F.3
Muncipinto, G.4
Carotti, A.5
-
19
-
-
1942471391
-
Assessing scoring functions for protein-ligand interactions
-
Ferrara, P.; Gohlke, H.; Price, D. J.; Klebe, G.; Brooks, C. L., III. Assessing scoring functions for protein-ligand interactions. J. Med. Chem. 2004, 47, 3032-3047.
-
(2004)
J. Med. Chem
, vol.47
, pp. 3032-3047
-
-
Ferrara, P.1
Gohlke, H.2
Price, D.J.3
Klebe, G.4
Brooks III, C.L.5
-
20
-
-
33746933809
-
Structural insights into monoamine oxidase inhibitory potency and selectivity of 7-substituted coumarins from ligand- and target-based approaches
-
Catto, M.; Nicolotti, O.; Leonetti, F.; Carotti, A.; Favia, A.; Soto-Otero, R.; Mendez-Alvarez, E.; Carotti, A. Structural insights into monoamine oxidase inhibitory potency and selectivity of 7-substituted coumarins from ligand- and target-based approaches. J. Med. Chem. 2006, 49, 4912-4295.
-
(2006)
J. Med. Chem
, vol.49
, pp. 4912-4295
-
-
Catto, M.1
Nicolotti, O.2
Leonetti, F.3
Carotti, A.4
Favia, A.5
Soto-Otero, R.6
Mendez-Alvarez, E.7
Carotti, A.8
-
21
-
-
85135598613
-
A knowledge-based approach to generating diverse but energetically representative ensembles of ligand conformers
-
in press
-
Dorfman, R. J.; Smith, K. M.; Masek, B. B.; Clark, R. D. A knowledge-based approach to generating diverse but energetically representative ensembles of ligand conformers. J. Comput. Aided Mol. Des. 2007, in press.
-
(2007)
J. Comput. Aided Mol. Des
-
-
Dorfman, R.J.1
Smith, K.M.2
Masek, B.B.3
Clark, R.D.4
-
22
-
-
37249040921
-
Homology modeling and receptor-based 3D-QSAR study of carbonic anhydrase IX
-
Tuccinardi, T.; Ortore, G.; Rossello, A.; Supuran, C. T.; Martinelli, A. Homology modeling and receptor-based 3D-QSAR study of carbonic anhydrase IX. J. Chem. Inf. Model. 2007, 47, 2253-2262.
-
(2007)
J. Chem. Inf. Model
, vol.47
, pp. 2253-2262
-
-
Tuccinardi, T.1
Ortore, G.2
Rossello, A.3
Supuran, C.T.4
Martinelli, A.5
-
23
-
-
0033214412
-
Exhaustive docking of molecular fragments with electrostatic solvation
-
Majeux, N.; Scarsi, M.; Apostolakis, C. E.; Caflisch, A. Exhaustive docking of molecular fragments with electrostatic solvation. Proteins 1999, 37, 88-105.
-
(1999)
Proteins
, vol.37
, pp. 88-105
-
-
Majeux, N.1
Scarsi, M.2
Apostolakis, C.E.3
Caflisch, A.4
-
25
-
-
33244462855
-
QSAR and QSPR studies of a highly structured physicochemical domain
-
Nicolotti, O.; Carotti, A. QSAR and QSPR studies of a highly structured physicochemical domain. J. Chem. Inf. Model. 2006, 46, 264-276.
-
(2006)
J. Chem. Inf. Model
, vol.46
, pp. 264-276
-
-
Nicolotti, O.1
Carotti, A.2
-
26
-
-
0037920567
-
Three-Dimensional Quantitative Structure-Activity Relationship Analyses using Comparative Molecular Field Analysis and Comparative Molecular Similarity Indices Analysis to elucidate selectivity differences of inhibitors binding to trypsin, thrombin, and factor Xa
-
Böhm, M.; Stürzebecher, J.; Klebe, G. Three-Dimensional Quantitative Structure-Activity Relationship Analyses using Comparative Molecular Field Analysis and Comparative Molecular Similarity Indices Analysis to elucidate selectivity differences of inhibitors binding to trypsin, thrombin, and factor Xa. J. Med. Chem. 1999, 42, 458-477.
-
(1999)
J. Med. Chem
, vol.42
, pp. 458-477
-
-
Böhm, M.1
Stürzebecher, J.2
Klebe, G.3
-
27
-
-
33750128643
-
Comparative binding energy analysis considering multiple receptors: A step toward 3D-QSAR models for multiple targets
-
Murcia, M.; Morreale, A.; Ortiz, A. R. Comparative binding energy analysis considering multiple receptors: a step toward 3D-QSAR models for multiple targets. J. Med. Chem. 2006, 49, 6241-6253.
-
(2006)
J. Med. Chem
, vol.49
, pp. 6241-6253
-
-
Murcia, M.1
Morreale, A.2
Ortiz, A.R.3
-
28
-
-
47349114731
-
-
SYBYL, version 7.1; Tripos Inc: St. Louis, MO, 2007
-
SYBYL, version 7.1; Tripos Inc: St. Louis, MO, 2007.
-
-
-
-
29
-
-
84986437005
-
Macromodel: An integrated software system for modelling organic and bioorganic molecules using molecular mechanics
-
Mohamadi, F.; Richards, N. G. J.; Guida, W. C.; Liskamp, R.; Lipton, M.; Caufield, C.; Chang, G.; Hendrikson, T.; Still, W. C. Macromodel: an integrated software system for modelling organic and bioorganic molecules using molecular mechanics. J. Comput. Chem. 1990, 11, 440-467.
-
(1990)
J. Comput. Chem
, vol.11
, pp. 440-467
-
-
Mohamadi, F.1
Richards, N.G.J.2
Guida, W.C.3
Liskamp, R.4
Lipton, M.5
Caufield, C.6
Chang, G.7
Hendrikson, T.8
Still, W.C.9
-
30
-
-
0026465007
-
Refined 2.3 Å X-ray crystal structure of bovine thrombine complexes formed with the benzamidine and arginine-based thrombin inhibitors NAPAP, 4-TAPAP and MPQA. A starting point for improving antithrombotics
-
Brandstetter, H.; Turk, D.; Höffken, H. W.; Grosse, D.; Stürzebecher, J.; Martin, P. D.; Edwards, B. F.; Bode, W. Refined 2.3 Å X-ray crystal structure of bovine thrombine complexes formed with the benzamidine and arginine-based thrombin inhibitors NAPAP, 4-TAPAP and MPQA. A starting point for improving antithrombotics. J. Mol. Biol. 1992, 226, 1085-1099.
-
(1992)
J. Mol. Biol
, vol.226
, pp. 1085-1099
-
-
Brandstetter, H.1
Turk, D.2
Höffken, H.W.3
Grosse, D.4
Stürzebecher, J.5
Martin, P.D.6
Edwards, B.F.7
Bode, W.8
-
31
-
-
0025851272
-
α-tosylated piperidines of m-amidino, p-amidino and p-guanidino phenylalanine to thrombin and trypsin. X-ray crystal structures of their trypsin complexes and modeling of their thrombin complexes
-
α-tosylated piperidines of m-amidino, p-amidino and p-guanidino phenylalanine to thrombin and trypsin. X-ray crystal structures of their trypsin complexes and modeling of their thrombin complexes. FEBS Lett. 1991, 287, 133-138.
-
(1991)
FEBS Lett
, vol.287
, pp. 133-138
-
-
Turk, D.1
Stürzebecher, J.2
Bode, W.3
-
32
-
-
0036661082
-
(R)-3- Amidinophenylalanine-derived inhibitors of factors Xa with a novel active-site binding mode
-
Mueller, M. M.; Sperl, S.; Stürzebecher, J.; Bode, W.; Moroder, L. (R)-3- Amidinophenylalanine-derived inhibitors of factors Xa with a novel active-site binding mode. Biol. Chem. 2003, 383, 1185-1191.
-
(2003)
Biol. Chem
, vol.383
, pp. 1185-1191
-
-
Mueller, M.M.1
Sperl, S.2
Stürzebecher, J.3
Bode, W.4
Moroder, L.5
-
33
-
-
47349088133
-
-
Maestro, version 7.5.112; Schröedinger, LLC: New York, 2006
-
Maestro, version 7.5.112; Schröedinger, LLC: New York, 2006.
-
-
-
-
34
-
-
0029912748
-
Development and testing of the OPLS All-atom force field on conformational energetics and properties of organic liquids
-
Jorgensen, W. L.; Maxwell, D. S.; Tirado-Rives, J. Development and testing of the OPLS All-atom force field on conformational energetics and properties of organic liquids. J. Am. Chem. Soc. 1996, 118, 11225-11236.
-
(1996)
J. Am. Chem. Soc
, vol.118
, pp. 11225-11236
-
-
Jorgensen, W.L.1
Maxwell, D.S.2
Tirado-Rives, J.3
-
35
-
-
0034201441
-
The European Molecular Biology Open Software Suite
-
Rice, P.; Longden, I.; Bleasby, A. EMBOSS: The European Molecular Biology Open Software Suite. Trends Genet. 2000, 16, 276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby3
EMBOSS, A.4
-
36
-
-
33644853216
-
Computational approaches to model ligand selectivity in drug design
-
Ortiz, A. R.; Gomez-Puertas, P.; Leo-Macias, A.; Lopez-Romero, P.; Lopez-Viñas, E.; Morreale, A.; Murcia, M.; Wang, K. Computational approaches to model ligand selectivity in drug design. Curr. Top. Med. Chem. 2006, 6, 41-55.
-
(2006)
Curr. Top. Med. Chem
, vol.6
, pp. 41-55
-
-
Ortiz, A.R.1
Gomez-Puertas, P.2
Leo-Macias, A.3
Lopez-Romero, P.4
Lopez-Viñas, E.5
Morreale, A.6
Murcia, M.7
Wang, K.8
-
37
-
-
34247266546
-
A new implicit solvent model for protein-ligand docking
-
Morreale, A.; Gil-Redondo, R.; Ortiz, A. R. A new implicit solvent model for protein-ligand docking. Proteins 2007, 67, 606-616.
-
(2007)
Proteins
, vol.67
, pp. 606-616
-
-
Morreale, A.1
Gil-Redondo, R.2
Ortiz, A.R.3
-
38
-
-
15244361633
-
3D-QSAR CoMFA studies on tyrpsin-like serine protease inhibitors: A comparative selectivity analysis
-
Bhongade, B. A.; Gouripur, V. V.; Gadad, A. K. 3D-QSAR CoMFA studies on tyrpsin-like serine protease inhibitors: a comparative selectivity analysis. Bioorg. Med. Chem. 2005, 13, 2773-2782.
-
(2005)
Bioorg. Med. Chem
, vol.13
, pp. 2773-2782
-
-
Bhongade, B.A.1
Gouripur, V.V.2
Gadad, A.K.3
-
39
-
-
0031552362
-
Development and Validation of a Genetic Algorithm for Flexible Docking
-
Jones, G.; Willett, P.; Glen, R. C.; Leach, A. R. L.; Taylor, R. Development and Validation of a Genetic Algorithm for Flexible Docking. J. Mol. Biol. 1997, 267, 727-748.
-
(1997)
J. Mol. Biol
, vol.267
, pp. 727-748
-
-
Jones, G.1
Willett, P.2
Glen, R.C.3
Leach, A.R.L.4
Taylor, R.5
-
40
-
-
0013133162
-
A new test set for validating predictions of protein-ligand interaction
-
Nissink, J. W.; Murray, C.; Hartshorn, M.; Verdonk, M. L.; Cole, J. C.; Taylor, R. A new test set for validating predictions of protein-ligand interaction. Proteins 2002, 49, 457-471.
-
(2002)
Proteins
, vol.49
, pp. 457-471
-
-
Nissink, J.W.1
Murray, C.2
Hartshorn, M.3
Verdonk, M.L.4
Cole, J.C.5
Taylor, R.6
-
41
-
-
0041919542
-
Improved protein-ligand docking using GOLD
-
Verdonk, M. L.; Cole, J. C.; Hartshorn, M. J.; Murray, C. W.; Taylor, R. D. Improved protein-ligand docking using GOLD. Proteins 2003, 52, 609-623.
-
(2003)
Proteins
, vol.52
, pp. 609-623
-
-
Verdonk, M.L.1
Cole, J.C.2
Hartshorn, M.J.3
Murray, C.W.4
Taylor, R.D.5
-
42
-
-
26444588137
-
DrugScore CSD-knowledge-based scoring function derived from small molecule crystal data with superior recognition rate of near-native ligand poses and better affinity prediction
-
Velec, H. F. G.; Gohlke, H.; Klebe, G. DrugScore CSD-knowledge-based scoring function derived from small molecule crystal data with superior recognition rate of near-native ligand poses and better affinity prediction. J. Med. Chem. 2005, 48, 6296-6303.
-
(2005)
J. Med. Chem
, vol.48
, pp. 6296-6303
-
-
Velec, H.F.G.1
Gohlke, H.2
Klebe, G.3
-
43
-
-
0033668809
-
Evaluation of reactant-based and product-based approaches to the design of combinatorial libraries
-
Gillet, V. J.; Nicolotti, O. Evaluation of reactant-based and product-based approaches to the design of combinatorial libraries. Perspect. Drug Discovery Des. 2000, 20, 265-287.
-
(2000)
Perspect. Drug Discovery Des
, vol.20
, pp. 265-287
-
-
Gillet, V.J.1
Nicolotti, O.2
-
44
-
-
0034632795
-
GRTD/CPCA: A new computational tool to design selective ligands
-
Kastenholz, M. A.; Pastor, M.; Cruciani, G.; Haaksma, E. E.; Fox, T. GRTD/CPCA: a new computational tool to design selective ligands. J. Med. Chem. 2000, 43, 3033-3044.
-
(2000)
J. Med. Chem
, vol.43
, pp. 3033-3044
-
-
Kastenholz, M.A.1
Pastor, M.2
Cruciani, G.3
Haaksma, E.E.4
Fox, T.5
-
45
-
-
0028800937
-
A novel strategy for improving ligand selectivity in receptor-based drug design
-
Pastor, M.; Cruciani, G. A novel strategy for improving ligand selectivity in receptor-based drug design. J. Med. Chem. 1995, 38, 4637-4647.
-
(1995)
J. Med. Chem
, vol.38
, pp. 4637-4647
-
-
Pastor, M.1
Cruciani, G.2
-
46
-
-
0028101464
-
Comparative molecular field analysis using GRID force-field and GOLPE variable selection methods in a study of inhibitors of glycogen Phosphorylase b
-
Cruciani, G.; Watson, K. A. Comparative molecular field analysis using GRID force-field and GOLPE variable selection methods in a study of inhibitors of glycogen Phosphorylase b. J. Med. Chem. 1994, 37, 2589-2601.
-
(1994)
J. Med. Chem
, vol.37
, pp. 2589-2601
-
-
Cruciani, G.1
Watson, K.A.2
-
47
-
-
0027310371
-
Generating Optimal Linear PLS Estimations (GOLPE): An Advanced Chemometric Tool for Handling 3D-QSAR Problems
-
Baroni, M.; Costantino, G.; Cruciani, G.; Riganelli, D.; Valigi, R.; Clementi, S. Generating Optimal Linear PLS Estimations (GOLPE): An Advanced Chemometric Tool for Handling 3D-QSAR Problems. Quant. Struct.-Act. Relat. 1993, 12, 9-20.
-
(1993)
Quant. Struct.-Act. Relat
, vol.12
, pp. 9-20
-
-
Baroni, M.1
Costantino, G.2
Cruciani, G.3
Riganelli, D.4
Valigi, R.5
Clementi, S.6
-
48
-
-
0035965479
-
Some recent developments in PLS modeling
-
Wold, S.; Trygg, J.; Berglund, A.; Antti, H. Some recent developments in PLS modeling. Chemom. Intell. Lab. Syst. 2001, 58, 131-150.
-
(2001)
Chemom. Intell. Lab. Syst
, vol.58
, pp. 131-150
-
-
Wold, S.1
Trygg, J.2
Berglund, A.3
Antti, H.4
-
49
-
-
0030920575
-
Smart region definition: A new way to improve the predictive ability and interpretability of three-dimensional quantitative structure-activity relationships
-
Pastor, M.; Cruciani, G.; Clementi, S. Smart region definition: a new way to improve the predictive ability and interpretability of three-dimensional quantitative structure-activity relationships. J. Med. Chem. 1997, 401455-1464.
-
(1997)
J. Med. Chem
, pp. 401455-401464
-
-
Pastor, M.1
Cruciani, G.2
Clementi, S.3
-
50
-
-
0037038314
-
A novel approach to deriving accurate and chemically intuitive QSAR models
-
Nicolotti, O.; Gillet, V. J.; Fleming, P.; Green, D. A novel approach to deriving accurate and chemically intuitive QSAR models. J. Med. Chem. 2002, 45, 5069-5080.
-
(2002)
J. Med. Chem
, vol.45
, pp. 5069-5080
-
-
Nicolotti, O.1
Gillet, V.J.2
Fleming, P.3
Green, D.4
-
51
-
-
47349116055
-
-
MATLAB The Language Of Technical Computing, version 7.3; The Mathworks: Natick, MA, 2006
-
MATLAB The Language Of Technical Computing, version 7.3; The Mathworks: Natick, MA, 2006.
-
-
-
-
52
-
-
47349112117
-
-
Pymol, version 1.1beta3; Delano Scientific LLC: South San Francisco, CA, 2008
-
Pymol, version 1.1beta3; Delano Scientific LLC: South San Francisco, CA, 2008.
-
-
-
-
53
-
-
33748663745
-
Integrated approach using protein and ligand information to analyze selectivity- and affinity-determining features of carbonic anhydrase isozymes
-
Hillebrecht, A.; Supuran, C. T.; Klebe, G. Integrated approach using protein and ligand information to analyze selectivity- and affinity-determining features of carbonic anhydrase isozymes. ChemMedChem 2006, 1, 839-53.
-
(2006)
ChemMedChem
, vol.1
, pp. 839-853
-
-
Hillebrecht, A.1
Supuran, C.T.2
Klebe, G.3
-
54
-
-
0034649564
-
Inhibition of monoamine oxidases by functionalized coumarin derivatives: Biological activities, QSARs, and 3D-QSARs
-
Gnerre, C.; Catto, M.; Leonetti, F.; Weber, P.; Carrupt, P.; Altomare, C.; Carotti, A.; Testa, B. Inhibition of monoamine oxidases by functionalized coumarin derivatives: biological activities, QSARs, and 3D-QSARs. J. Med. Chem. 2000, 43, 4747-4758.
-
(2000)
J. Med. Chem
, vol.43
, pp. 4747-4758
-
-
Gnerre, C.1
Catto, M.2
Leonetti, F.3
Weber, P.4
Carrupt, P.5
Altomare, C.6
Carotti, A.7
Testa, B.8
-
55
-
-
0035855832
-
Coumarins derivatives as dual inhibitors of acetylcholinesterase and monoamine oxidase
-
Briihlmann, C.; Ooms, F.; Carrupt, P.; Testa, B.; Catto, M.; Leonetti, F.; Altomare, C.; Carotti, A. Coumarins derivatives as dual inhibitors of acetylcholinesterase and monoamine oxidase. J. Med. Chem. 2001, 44, 3195-3198.
-
(2001)
J. Med. Chem
, vol.44
, pp. 3195-3198
-
-
Briihlmann, C.1
Ooms, F.2
Carrupt, P.3
Testa, B.4
Catto, M.5
Leonetti, F.6
Altomare, C.7
Carotti, A.8
-
56
-
-
0041488802
-
Pharmacophore discovery - lessons learned
-
van Drie, J. H. Pharmacophore discovery - lessons learned. Curr. Pharm. Des. 2003, 9, 1649-1664.
-
(2003)
Curr. Pharm. Des
, vol.9
, pp. 1649-1664
-
-
van Drie, J.H.1
-
57
-
-
0035866695
-
Comparative binding energy (COMBINE) analysis of influenza neuramidase-inhibitor complexes
-
Wang, T.; Wade, R. C. Comparative binding energy (COMBINE) analysis of influenza neuramidase-inhibitor complexes. J. Med. Chem. 2001, 44, 961-971.
-
(2001)
J. Med. Chem
, vol.44
, pp. 961-971
-
-
Wang, T.1
Wade, R.C.2
-
58
-
-
47349120216
-
A simple method for visualizing the differences between related receptor sites
-
Sheridan, R. P.; Holloway, M. K.; McGaughey, G.; Mosley, R. T.; Singh, S. B. A simple method for visualizing the differences between related receptor sites. J. Mol. Graphics Modell. 2000, 43, 3033-3044.
-
(2000)
J. Mol. Graphics Modell
, vol.43
, pp. 3033-3044
-
-
Sheridan, R.P.1
Holloway, M.K.2
McGaughey, G.3
Mosley, R.T.4
Singh, S.B.5
-
59
-
-
13544275571
-
Virtual screening against highly charged active site: Identifying substrates of alpha-beta barrel enzymes
-
Kalyanaraman, C.; Bernacki, K.; Jacobson, M. P. Virtual screening against highly charged active site: identifying substrates of alpha-beta barrel enzymes. Biochemistry. 2005, 44, 2059-2071.
-
(2005)
Biochemistry
, vol.44
, pp. 2059-2071
-
-
Kalyanaraman, C.1
Bernacki, K.2
Jacobson, M.P.3
-
60
-
-
2342636434
-
General model for estimation of the inhibition of protein kinases using Monte Carlo simulations
-
Tominaga, Y.; Jorgensen, W. L. General model for estimation of the inhibition of protein kinases using Monte Carlo simulations. J. Med. Chem. 2004, 47, 2534-2549.
-
(2004)
J. Med. Chem
, vol.47
, pp. 2534-2549
-
-
Tominaga, Y.1
Jorgensen, W.L.2
-
61
-
-
37349085453
-
A flexible approach to induced fit docking
-
Nabuurs, S. B.; Wagener, M.; de Velig, J. A flexible approach to induced fit docking. J. Med. Chem. 2007, 50, 6507-6518.
-
(2007)
J. Med. Chem
, vol.50
, pp. 6507-6518
-
-
Nabuurs, S.B.1
Wagener, M.2
de Velig, J.3
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