A threonine on the active site loop controls transition state formation in Escherichia coli respiratory complex II

Journal of Biological Chemistry

Volumn 283, Issue 22, 2008, Pages 15460-15468

  Tomasiak, Thomas M ^a   Maklashina, Elena ^b,c   Cecchini, Gary ^b,c   Iverson, Tina M ^a  

^a VANDERBILT UNIVERSITY   (United States)

^b SAN FRANCISCO VETERANS AFFAIRS MEDICAL CENTER   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINATION; AMINES; AMINO ACIDS; CATALYSIS; CRYSTAL STRUCTURE; ENZYMES; ESCHERICHIA COLI; HYDROGEN; ORGANIC ACIDS; PLANTS (BOTANY); PROTONS; SUBSTRATES;

ACTIVE SITES; ANAEROBIC RESPIRATIONS; BINDING DOMAINS; DO-MAINS; DOUBLE BONDS; FUMARATE; HYDROGEN BONDINGS; INTER DOMAINS; INTERCONVERSION; LOOP CONTROLS; OXIDOREDUCTASE; PROTON SHUTTLES; PROTONATION STATES; QUINOL:FUMARATE REDUCTASES; RESPIRATORY COMPLEXES; SUBSTRATE BINDINGS; THREONINE RESIDUES; TRANSITION STATES; TWO DOMAINS; UBIQUINONE;

HYDROGEN BONDS;

ALANINE; FLAVINE ADENINE NUCLEOTIDE; FUMARIC ACID; SUCCINATE DEHYDROGENASE; SUCCINATE DEHYDROGENASE (UBIQUINONE); THREONINE; FUMARIC ACID DERIVATIVE; OXIDOREDUCTASE; PROTON; QUINOL FUMARATE REDUCTASE; RESPIRATORY COMPLEX II; SUCCINIC ACID;

ARTICLE; BACTERIAL MUTATION; BINDING SITE; CATALYSIS; CONTROLLED STUDY; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; ENZYME MECHANISM; ESCHERICHIA COLI; HYDROGEN BOND; KINETICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; PROTON TRANSPORT; WILD TYPE; AEROBIC METABOLISM; ANAEROBIC GROWTH; CHEMICAL STRUCTURE; CHEMISTRY; ENZYMOLOGY; METABOLISM; PHYSIOLOGY; PROTEIN BINDING; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE;

ESCHERICHIA COLI;

AEROBIOSIS; ANAEROBIOSIS; ELECTRON TRANSPORT COMPLEX II; ESCHERICHIA COLI; FLAVIN-ADENINE DINUCLEOTIDE; FUMARATES; HYDROGEN BONDING; MODELS, MOLECULAR; OXIDOREDUCTASES; PROTEIN BINDING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; PROTONS; SUCCINIC ACID;

EID: 47249159547     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M801372200     Document Type: Article

References (52)

1. Cecchini, G. (2003) Annu. Rev. Biochem. 72, 77-109
2. Iverson, T. M., Luna-Chavez, C., Schröder, I., Cecchini, G., and Rees, D. C. (2000) Curr. Opin. Struct. Biol. 10, 448-455
3. Ohnishi, T., King, T. E., Salerno, J. C., Blum, H., Bowyer, J. R., and Maida, T. (1981) J. Biol. Chem. 256, 5577-5582
4. Blaut, M., Whittaker, K., Valdovinos, A., Ackrell, B. A. C., Gunsalus, R. P., and Cecchini, G. (1989) J. Biol. Chem. 264, 13599-13604
5. Ackrell, B. A. C., Cochran, B., and Cecchini, G. (1989) Arch. Biochem. Biophys. 268, 26-34
6. Leger, C., Heffron, K., Pershad, H. R., Maklashina, E., Luna-Chavez, C., Cecchini, G., Ackrell, B. A. C., and Armstrong, F. A. (2001) Biochemistry 40, 11234-11245
7. Jeuken, L. J. C., Jones, A. K., Chapman, S. K., Cecchini, G., and Armstrong, F. A. (2002) J. Amer. Chem. Soc. 124, 5702-5713
8. Mattevi, A., Tedeschi, G., Bacchella, L., Coda, A., Negri, A., and Ronchi, S. (1999) Structure 7, 745-756
9. Bamford, V., Dobbin, P. S., Richardson, D. J., and Hemmings, A. M. (1999) Nat. Struct. Biol. 6, 1104-1107
10. Taylor, P., Pealing, S. L., Reid, G. A., Chapman, S. K., and Walkinshaw, M. D. (1999) Nat. Struct. Biol. 6, 1108-1112
11. Leys, D., Tsapin, A. S., Nealson, K. H., Meyer, T. E., Cusanovich, M. A., and Van Beeumen, J. J. (1999) Nat. Struct. Biol. 6, 1113-1117
12. Reid, G. A., Miles, C. S., Moysey, R. K., Pankhurst, K. L., and Chapman, S. K. (2000) Biochim. Biophys. Acta 1459, 310-315
13. Lancaster, C. R. D. (2003) Adv. Protein Chem. 63, 131-149
14. Ackrell, B. A. C. (2000) FEBS Lett. 466, 1-5
15. Lancaster, C. R. D., and Kroger, A. (2000) Biochim. Biophys. Acta 1459, 422-431
16. Sun, F., Huo, X., Zhai, Y., Wang, A., Xu, J., Su, D., Bartlam, M., and Rao, Z. (2005) Cell 121, 1043-1057
17. Huang, L. S., Shen, J. T., Wang, A. C., and Berry, E. A. (2006) Biochim. Biophys. Acta 1757, 1073-1083
18. Yankovskaya, V., Horsefield, R., Törnroth, S., Luna-Chavez, C., Miyoshi, H., Léger, C., Byrne, B., Cecchini, G., and Iwata, S. (2003) Science 299, 700-704
19. Huang, L. S., Sun, G., Cobessi, D., Wang, A. C., Shen, J. T., Tung, E. Y., Anderson, V. E., and Berry, E. A. (2006) J. Biol. Chem. 281, 5965-5972
20. Madej, M. G., Nasiri, H. R., Hilgendorff, N. S., Schwalbe, H., and Lancaster, C. R. D. (2006) EMBO J. 25, 4963-4970
21. Lancaster, C. R. D., Kroger, A., Auer, M., and Michel, H. (1999) Nature 402, 377-385
22. Lancaster, C. R. D., Gross, R., and Simon, J. (2001) Eur. J. Biochem. 268, 1820-1827
23. Iverson, T. M., Luna-Chavez, C., Cecchini, G., and Rees, D. C. (1999) Science 284, 1961-1966
24. Rothery, E. L., Mowat, C. G., Miles, C. S., Mott, S., Walkinshaw, M. D., Reid, G. A., and Chapman, S. K. (2004) Biochemistry 43, 4983-4989
25. Mattevi, A. (2006) Trends Biochem. Sci. 31, 276-283
26. Doherty, M. K., Pealing, S. L., Miles, C. S., Moysey, R., Taylor, P., Walkinshaw, M. D., Reid, G. A., and Chapman, S. K. (2000) Biochemistry 39, 10695-10701
27. Pankhurst, K. L., Mowat, C. G., Miles, C. S., Leys, D., Walkinshaw, M. D., Reid, G. A., and Chapman, S. K. (2002) Biochemistry 41, 8551-8556
28. Mowat, C. G., Moysey, R., Miles, C. S., Leys, D., Doherty, M. K., Taylor, P., Walkinshaw, M. D., Reid, G. A., and Chapman, S. K. (2001) Biochemistry 40, 12292-12298
29. Pankhurst, K. L., Mowat, C. G., Rothery, E. L., Hudson, J. M., Jones, A. K., Miles, C. S., Walkinshaw, M. D., Armstrong, F. A., Reid, G. A., and Chapman, S. K. (2006) J. Biol. Chem. 281, 20589-20597
30. Westenberg, D. J., Gunsalus, R. P., Ackrell, B. A. C., Sices, H., and Cecchini, G. (1993) J. Biol. Chem. 268, 815-822
31. Maklashina, E., Berthold, D. A., and Cecchini, G. (1998) J. Bacteriol. 180, 5989-5996
32. Maklashina, E., Rothery, R. A., Weiner, J. H., and Cecchini, G. (2001) J. Biol. Chem. 276, 18968-18976
33. Rothery, R. A., Seime, A. M., Spiers, A. M. C., Maklashina, E., Schroder, I., Gunsalus, R. P., Cecchini, G., and Weiner, J. H. (2005) FEBS J. 272, 313-326
34. Kita, K., Vibat, C. R. T., Meinhardt, S., Guest, J. R., and Gennis, R. B. (1989) J. Biol. Chem. 264, 2672-2677
35. Maklashina, E., Hellwig, P., Rothery, R. A., Kotlyar, V., Sher, Y., Weiner, J. H., and Cecchini, G. (2006) J. Biol. Chem. 281, 26655-26664
36. Maklashina, E., Iverson, T. M., Sher, Y., Kotlyar, V., Andréll, J., Mirza, O., Hudson, J. M., Armstrong, F. A., Rothery, R. A., Weiner, J. H., and Cecchini, G. (2006) J. Biol. Chem. 281, 11357-11365
37. Luna-Chavez, C., Iverson, T. M., Rees, D. C., and Cecchini, G. (2000). Protein Expression Purif. 19, 188-196
38. Otwinowski, Z. (1993) in CCP4 Study Weekend Data Collection and Processing (Sawyer, L., Isaacs, N., and Bailey S., eds) pp. 56-62, SERC Daresbury Laboratory, United Kingdom
39. Bailey, S. (1994) Acta Crystallogr. Sect. D 50, 760-763
40. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D 54, 905-921
41. Adams, P. D., Grosse-Kunstleve, R. W., Hung, L. W., Ioerger, T. R., McCoy, A. J., Moriarty, N. W., Read, R. J., Sacchettini, J. C., Sauter, N. K., and Terwilliger, T. C. (2002) Acta Crystallogr. Sect. D 58, 1948-1954
42. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. Sect. A 47, 110-119
43. Emsley, P., and Cowtan, K. (2004) Acta Crystallogr. Sect. D 60, 2126-2132
44. DePristo, M. A., de Bakker, P. I. W., Johnson, R. J. K., and Blundell, T. L. (2005) Structure 13, 1311-1319
45. DeLano, W. L. (2002) PyMOL, DeLano Scientific, Palo Alto, CA
46. Veeger, C., Dervartanian, D. V., Kalse, J. F., de Kok, A., and Koster, J. F. (1966) in Flavins and Flavoproteins (Slater, E. C., ed) pp. 242-262, Elsevier, Amsterdam, The Netherlands
47. Wardrope, C., Mowat, C. G., Walkinshaw, M. D., Reid, G. A., and Chapman, S. K. (2006) FEBS Lett. 580, 1677-1680
48. Massey, V., and Ghisla, S. (1974) Ann. N. Y. Acad. Sci. 227, 446-465
49. Maklashina, E., and Cecchini, G. (1999) Arch. Biochem. Biophys. 369, 223-232
50. Iverson, T. M., Luna-Chavez, C., Croal, L. R., Cecchini, G., and Rees, D. C. (2002) J. Biol. Chem. 277, 16124-16130
51. Schröder, I., Gunsalus, R. P., Ackrell, B. A. C., Cochran, B., and Cecchini, G. (1991) J. Biol. Chem. 266, 13572-13579
52. Bossi, R. T., Negri, A., Tedeschi, G., and Mattevi, A. (2002) Biochemistry 41, 3018-3024