A proton delivery pathway in the soluble fumarate reductase from Shewanella frigidimarina

Journal of Biological Chemistry

Volumn 281, Issue 29, 2006, Pages 20589-20597

  Pankhurst, Katherine L ^a   Mowat, Christopher G ^a   Rothery, Emma L ^a   Hudson, Janette M ^b   Jones, Anne K ^b   Miles, Caroline S ^a   Walkinshaw, Malcolm D ^a   Armstrong, Fraser A ^b   Reid, Graeme A ^a   Chapman, Stephen K ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BIOCHEMISTRY; CRYSTAL STRUCTURE; MUTAGENESIS; REACTION KINETICS; WATER;

ARG-402; MUTANT ENZYMES; PROTON TRANSFER PATHWAY; SOLVENT KINETIC ISOTOPE EFFECTS;

ENZYMES;

ARGININE; ASPARTIC ACID; FUMARATE REDUCTASE; GLUTAMINE; LYSINE; METHIONINE; PROTON; SUCCINATE DEHYDROGENASE;

ARTICLE; CRYSTAL STRUCTURE; NONHUMAN; POTENTIOMETRY; PRIORITY JOURNAL; SHEWANELLA; SHEWANELLA FRIGIDIMARINA; WILD TYPE;

AMINO ACIDS; BINDING SITES; FLAVIN-ADENINE DINUCLEOTIDE; HISTORY, 15TH CENTURY; HYDROGEN-ION CONCENTRATION; KINETICS; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; PROTEIN CONFORMATION; RECOMBINANT PROTEINS; SHEWANELLA; SUCCINATE DEHYDROGENASE;

SHEWANELLA FRIGIDIMARINA;

EID: 33745972079     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M603077200     Document Type: Article

References (41)

1. Agnon, N. (1995) Chem. Phys. Lett. 244, 456-462
2. Paddock, M. L., Aedelroth, P., Feher, G., Okamura, M. Y., and Beatty, J. T. (2002) Biochemistry 41, 14716-14725
3. Zheng, X., Medvedev, D. M., Swanson, J., and Stuchebrukhov, A. A. (2003) Biochim. Biophys. Acta 1557, 99-107
4. Wikstrom, M., Verkhovsky, M. I., and Hummer, G. (2003) Biochim. Biophys. Acta 1064, 61-65
5. Qui, C., and Karplus, M. (2003) J. Phys. Chem. B Condens. Matter Mater. Surf. Interfaces Biophys. 107, 1071-1078
6. Kandori, H. (2004) Biochim. Biophys. Acta 1658, 72-79
7. Chen, K., Hirst, J., Camba, R., Bonagura, C. A., Stout, C. D., Burgess, B. K., and Armstrong, F. A. (2000) Nature 405, 814-817
8. Iverson, T. M., Luna-Chavez, C., Cecchini, G., and Rees, D. C. (1999) Science 284, 1961-1966
9. Körtner, C., Lauterbach, F., Tripier, D., Unden, G., and Kröger, A. (1990) Mol. Microbiol. 4, 855-860
10. Yankovskaya, V., Horsfield, R., Tornroth, S., Luna-Chavez, C., Hideto, M., Leger, C., Byrne, B., Cecchini, G., and Iwata, S. (2003) Science 299, 700-704
11. Lancaster, C. R. D., Kröger, A., Auer, M., and Michel, H. (1999) Nature 402, 377-385
12. Lancaster, C. R. D., Gross, R., and Simon, J. (2001) Eur. J. Biochem. 268, 1820-1827
13. Taylor, P., Pealing, S. L., Reid, G. A., Chapman, S. K., and Walkinshaw, M. D. (1999) Nat. Struct. Biol. 6, 1108-1112
14. Leys, D., Tsapin, A. S., Nealson, K. H., Meyer, T. E., Cusanovich, M. A., and Van Beeumen, J. J. (1999) Nat. Struct. Biol. 6, 1113-1117
15. Bamford, V., Dobbin, P. S., Richardson, D. J., and Hemmings, A. M. (1999) Nat. Struct. Biol. 6, 1104-1107
16. Doherty, M. K., Pealing, S. L., Miles, C. S., Moysey, R., Taylor, P., Walkinshaw, M. D., Reid, G. A., and Chapman, S. K. (2000) Biochemistry 39, 10695-10701
17. Mowat, C. G., Moysey, R., Miles, C. S., Leys, D., Doherty, M. K., Taylor, P., Walkinshaw, M. D., Reid, G. A., and Chapman, S. K. (2001) Biochemistry 40, 12292-12298
18. Mowat, C. G., Pankhurst, K. L., Miles, C. S., Leys, D., Walkinshaw, M. D., Reid, G. A., and Chapman, S. K. (2002) Biochemistry 41, 11990-11996
19. Reid, G. A., Miles, C. S., Moysey, R. K., Pankhurst, K. L., and Chapman, S. K. (2000) Biochim. Biophys. Acta. 1459, 310-315
20. Kunkel, T. A., and Roberts, J. D. (1987) Methods Enzymol. 154, 367-382
21. Michel, L. O., Sandkvist, M., and Bagdasarian, M. (1995) Gene (Amst.) 152, 41-45
22. Gordon, E. H. J., Pealing, S. L., Chapman, S. K., Ward, F. B., and Reid, G. A. (1998) Microbiology 4, 937-945
23. Pealing, S. L., Cheesman, M. R., Reid, G. A., Thomson, A. J., Ward, F. B., and Chapman, S. K. (1995) Biochemistry 34, 6153-6158
24. Pealing, S. L., Lysek, D. A., Taylor, P., Alexeev, D., Reid, G. A., Chapman, S. K., and Walkinshaw, M. D. (1999) J. Struct. Biol. 127, 76-78
25. Macheroux, P. (1999) in Flavoprotein Protocols: Methods in Molecular Biology (Chapman, S. K., and Reid, G. A., Eds.) Vol. 131, pp 1-7, Humana Press, Totowa, NJ
26. Turner, K. L., Doherty, M. K., Heering, H. A., Armstrong, F. A., Reid, G. A., and Chapman, S. K. (1999) Biochemistry 38, 3302-3309
27. Rothery, E. L., Mowat, C. G., Miles, C. S., Walkinshaw, M. D., Reid, G. A., and Chapman, S. K. (2003) Biochemistry 42, 13160-13169
28. Glascoe, P. K., and Long, F. A. (1960) J. Phys. Chem. 64, 188-191
29. Schowen, K. B., and Schowen, R. L. (1982) Methods Enzymol. 87, 551-606
30. Sucheta, A., Cammack, R., Weiner, J., and Armstrong, F. A. (1993) Biochemistry 32, 5455-5465
31. Bard, A. J., and Faulkner, L. R. (2001) Electrochemical Methods: Fundamentals and Applications, 2nd Ed., p. 3, John Wiley & Sons, Inc., New York
32. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
33. Roussel, A., and Cambillau, C. (1991) TURBO-FRODO, Silicon Graphics Geometry Partners Directory 86, Silicon Graphics, Mountain View, CA
34. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. D Biol. Crystallogr. 53, 240-255
35. Léger, C., Elliott, S. J., Hoke, K. R., Jeuken, L. J. C., Jones, A. K., and Armstrong, F. A. (2003) Biochemistry 42, 8653- 8662
36. Hirst, J., Duff, J. L. C., Jameson, G. N. L., Kemper, M. A., Burgess, B. K., and Armstrong, F. A. (1998) J. Am. Chem. Soc. 120, 7085-7094
37. Jones, A. K., Camba, R., Reid, G. A., Chapman, S. K., and Armstrong, F. A. (2000) J. Am. Chem. Soc. 122, 6494-6495
38. Rothery, E. L., Mowat, C. G., Miles, C. S., Mott, S., Walkinshaw, M. D., Reid, G. A., and Chapman, S. K. (2004) Biochemistry 43, 4983-4989
39. Esnouf, R. M. (1997) J. Mol. Graph. 15, 132-134
40. Merritt, E. A., and Murphy, M. E. P. (1994) Acta Crystallogr. D Biol. Crystallogr. 50, 869-873
41. Demetin, S., Burlat, B., De Lacey, A. L., Pardo, A., Adryanczyk-Perrier, G., Guigliarelli, B., Fernandez, V. M., and Rousset, M. (2004) J. Biol. Chem. 279, 10508-10513