Reference energy extremal optimization: A stochastic search algorithm applied to computational protein design

Journal of Computational Chemistry

Volumn 29, Issue 11, 2008, Pages 1762-1771

  Zhang, Naigong ^a   Zeng, Chen ^a  

^a GEORGE WASHINGTON UNIVERSITY   (United States)

Author keywords

Combinatorial optimization; Computational protein design; Extremal optimization; Reference energy extremal optimization; Simulated annealing

Indexed keywords

COMBINATORIAL OPTIMIZATION ALGORITHM; ENERGY PROFILING; EXTREMAL OPTIMIZATION (EO); IMPROVED METHODS; LOCAL ENERGIES; POWER LAWS; PROTEIN DESIGN; REFERENCE ENERGY; ROTAMER; SEARCH PROBLEMS; SIMULATED ANNEALING (SA); STOCHASTIC SEARCH ALGORITHMS;

ANNEALING; BOOLEAN FUNCTIONS; COMBINATORIAL MATHEMATICS; COMBINATORIAL OPTIMIZATION; GROUND STATE; HEURISTIC PROGRAMMING; LEARNING ALGORITHMS; OPTIMIZATION; PROBABILITY DISTRIBUTIONS; TIME VARYING CONTROL SYSTEMS;

SIMULATED ANNEALING;

PROTEIN;

ALGORITHM; ARTICLE; CHEMISTRY; STATISTICS;

ALGORITHMS; PROTEINS; STOCHASTIC PROCESSES;

EID: 47149117032     PISSN: 01928651     EISSN: 1096987X     Source Type: Journal    
DOI: 10.1002/jcc.20937     Document Type: Article

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