Conformational Splitting: A More Powerful Criterion for Dead-End Elimination

Journal of Computational Chemistry

Volumn 21, Issue 11, 2000, Pages 999-1009

  Pierce, N A ^a   Spriet, J A ^b   Desmet, J ^b,c   Mayo, S L ^a  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^b UNIVERSITY OF LEUVEN   (Belgium)

^c Algonomics   (Belgium)

Author keywords

Conformational splitting; Dead end elimination; Global minimum energy conformation; Protein design; Side chain placement

Indexed keywords

EID: 0001114311     PISSN: 01928651     EISSN: None     Source Type: Journal    
DOI: 10.1002/1096-987X(200008)21:11<999::AID-JCC9>3.0.CO;2-A     Document Type: Article

References (14)

1. Dahiyat, B. I.; Mayo, S. L. Science 1997, 278, 82.
2. Desmet, J.; De Maeyer, M.; Hazes, B.; Lasters, I. Nature 1992, 356, 539.
3. Janin, J.; Wodak, S.; Levitt, M.; Maigret, D. J Mol Biol 1978, 125, 357.
4. Ponder, J. W.; Richards, F. J Mol Biol 1987, 193, 775.
5. Dunbrack, R. L.; Karplus, M. J Mol Biol 1993, 230, 543.
6. Lasters, I.; Desmet, J. Prot Eng 1993, 6, 717.
7. Goldstein, R. F. Biophys J 1994, 66, 1335.
8. Lasters, I.; De Maeyer, M.; Desmet, J. Prot Eng 1995, 8, 815.
9. Dahiyat, B. I.; Mayo, S. L. Prot Sci 1996, 5, 895.
10. Gordon, D. B.; Mayo, S. L. J Comput Chem 1998, 19, 1505.
11. Desmet, J.; De Maeyer, M.; Lasters, I. In: Altman, R. B., et al., eds. Pacific Symposium on Biocomputing '97; World Scientific: Singapore, 1997; p 122.
12. Dahiyat, B. I.; Gordon, D. B.; Mayo, S. L. Prot Sci 1997, 6, 1333.
13. Street, A. G.; Mayo, S. L. Folding Des 1998, 3, 253.
14. Gordon, D. B.; Marshall, S. A.; Mayo, S. L. Curr Opin Struct Biol 1999, 9,509.