Histone acetylation and methylation at sites initiating divergent polycistronic transcription in Trypanosoma cruzi

Journal of Biological Chemistry

Volumn 283, Issue 23, 2008, Pages 15884-15892

  Respuela, Patricia ^a   Ferella, Marcela ^b   Rada Iglesias, Alvaro ^a,c   Åslund, Lena ^a  

^a UPPSALA UNIVERSITY   (Sweden)

^b KAROLINSKA INSTITUTE   (Sweden)

^c UPPSALA UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ACETYLATION; DNA; GENES; NUCLEIC ACIDS; ORGANIC ACIDS; PROGRAMMING THEORY;

CODING GENES; DIVERGENT GENES; EPIGENETIC MARKS; GENE PAIRS; HISTONE ACETYLATIONS; HISTONE MODIFICATIONS; INITIATION SITES; INTERGENIC REGIONS; KINETOPLASTID PARASITES; TRANSCRIPTIONAL INITIATIONS; TRANSCRIPTIONAL REGULATIONS; TRYPANOSOMA CRUZI;

TRANSCRIPTION;

HISTONE; RIBOSOME RNA; PROTOZOAL PROTEIN; PROTOZOAL RNA; SATELLITE DNA;

5' UNTRANSLATED REGION; ACETYLATION; ARTICLE; CHROMATIN IMMUNOPRECIPITATION; DNA MODIFICATION; GENE CLUSTER; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; METHYLATION; MOLECULAR CLONING; PRIORITY JOURNAL; PROTEIN EXPRESSION; RNA SPLICING; TRYPANOSOMA CRUZI; WESTERN BLOTTING; ANIMAL; BIOSYNTHESIS; GENOME; METABOLISM; MOLECULAR EVOLUTION; PHYSIOLOGY; PROMOTER REGION; PROTEIN PROCESSING;

EUKARYOTA; KINETOPLASTIDA; TRYPANOSOMA CRUZI;

ACETYLATION; ANIMALS; DNA, SATELLITE; EVOLUTION, MOLECULAR; GENOME, PROTOZOAN; HISTONES; METHYLATION; PROMOTER REGIONS (GENETICS); PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTOZOAN PROTEINS; RNA, PROTOZOAN; RNA, RIBOSOMAL; TRANSCRIPTION, GENETIC; TRYPANOSOMA CRUZI;

EID: 47049084288     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M802081200     Document Type: Article

References (55)

1. El-Sayed, N. M., Myler, P. J., Bartholomeu, D. C., Nilsson, D., Aggarwal, G., Tran, A. N., Ghedin, E., Worthey, E. A., Delcher, A. L., Blandin, G., Westenberger, S. J., Caler, E., Cerqueira, G. C., Branche, C., Haas, B., Anupama, A., Arner, E., Åslund, L., Attipoe, P., Bontempi, E., Bringaud, F., Burton, P., Cadag, E., Campbell, D. A., Carrington, M., Crabtree, J., Darban, H., da Silveira, J. F., de Jong, P., Edwards, K., Englund, P. T., Fazelina, G., Feldblyum, T., Ferella, M., Frasch, A. C., Gull, K., Horn, D., Hou, L., Huang, Y., Kindlund, E., Klingbeil, M., Kluge, S., Koo, H., Lacerda, D., Levin, M. J., Lorenzi, H., Louie, T., Machado, C. R., McCulloch, R., McKenna, A., Mizuno, Y., Mottram, J. C., Nelson, S., Ochaya, S., Osoegawa, K., Pai, G., Parsons, M., Pentony, M., Pettersson, U., Pop, M., Ramirez, J. L., Rinta, J., Robertson, L., Salzberg, S. L., Sanchez, D. O., Seyler, A., Sharma, R., Shetty, J., Simpson, A. J., Sisk, E., Tammi, M. T., Tarleton, R., Teixeira, S., Van Aken, S., Vogt, C., Ward, P. N., Wickstead, B., Wortman, J., White, O., Fraser, C. M., Stuart, K. D., and Andersson, B. (2005) Science 309, 409-415
2. Palenchar, J. B., and Bellofatto, V. (2006) Mol. Biochem. Parasitol. 146, 135-141
3. Martinez-Calvillo, S., Yan, S., Nguyen, D., Fox, M., Stuart, K., and Myler, P. J. (2003) Mol. Cell 11, 1291-1299
4. Martinez-Calvillo, S., Nguyen, D., Stuart, K., and Myler, P. J. (2004) Eukaryot. Cell 3, 506-517
5. Sullivan, W. J., Jr., Naguleswaran, A., and Angel, S. O. (2006) Cell. Microbiol. 8, 1850-1861
6. Åslund, L., Carlsson, L., Henriksson, J., Rydåker, M., Toro, G. C., Galanti, N., and Pettersson, U. (1994) Mol. Biochem. Parasitol. 65, 317-330
7. Solari, A. J. (1980) Chromosoma (Berl.) 78, 239-255
8. Elias, M. C., Marques-Porto, R., Freymuller, E., and Schenkman, S. (2001) Mol. Biochem. Parasitol. 112, 79-90
9. Lowell, J. E., and Cross, G. A. (2004) J. Cell Sci. 117, 5937-5947
10. Lowell, J. E., Kaiser, F., Janzen, C. J., and Cross, G. A. (2005) J. Cell Sci. 118, 5721-5730
11. DiPaolo, C., Kieft, R., Cross, M., and Sabatini, R. (2005) Mol. Cell 17, 441-451
12. Janzen, C. J., Hake, S. B., Lowell, J. E., and Cross, G. A. (2006) Mol. Cell 23, 497-507
13. Ingram, A. K., and Horn, D. (2002) Mol. Microbiol. 45, 89-97
14. Garcia-Salcedo, J. A., Gijon, P., Nolan, D. P., Tebabi, P., and Pays, E. (2003) EMBO J. 22, 5851-5862
15. Rando, O. J. (2007) Curr. Opin. Genet. Dev. 17, 1-6
16. Janzen, C. J., Fernandez, J. P., Deng, H., Diaz, R., Hake, S. B., and Cross, G. A. (2006) FEBS Lett. 580, 2306-2310
17. da Cunha, J. P., Nakayasu, E. S., de Almeida, I. C., and Schenkman, S. (2006) Mol. Biochem. Parasitol. 150, 268-277
18. Mandava, V., Fernandez, J. P., Deng, H., Janzen, C. J., Hake, S. B., and Cross, G. A. (2007) Mol. Biochem. Parasitol. 156, 41-50
19. Kendall, G., Wilderspin, A. F., Ashall, F., Miles, M. A., and Kelly, J. M. (1990) EMBO J. 9, 2751-2758
20. Rada-Iglesias, A., Wallerman, O., Koch, C., Ameur, A., Enroth, S., Clelland, G., Wester, K., Wilcox, S., Dovey, O. M., Ellis, P. D., Wraight, V. L., James, K., Andrews, R., Langford, C., Dhami, P., Carter, N., Vetrie, D., Ponten, F., Komorowski, J., Dunham, I., and Wadelius, C. (2005) Hum. Mol. Genet. 14, 3435-3447
21. Saksouk, N., Bhatti, M. M., Kieffer, S., Smith, A. T., Musset, K., Garin, J., Sullivan, W. J., Jr., Cesbron-Delauw, M. F., and Hakimi, M. A. (2005) Mol. Cell. Biol. 25, 10301-10314
22. Gissot, M., Kelly, K. A., Ajioka, J. W., Greally, J. M., and Kim, K. (2007) PLoS Pathog. 3, e77
23. Liu, C. L., Kaplan, T., Kim, M., Buratowski, S., Schreiber, S. L., Friedman, N., and Rando, O. J. (2005) PLoS Biol. 3, e328
24. Bernstein, B. E., Kamal, M., Lindblad-Toh, K., Bekiranov, S., Bailey, D. K., Huebert, D. J., McMahon, S., Karlsson, E. K., Kulbokas, E. J., III, Gingeras, T. R., Schreiber, S. L., and Lander, E. S. (2005) Cell 120, 169-181
25. Ruan, J. P., Arhin, G. K., Ullu, E., and Tschudi, C. (2004) Mol. Cell. Biol. 24, 9610-9618
26. Yuan, G. C., Liu, Y. J., Dion, M. F., Slack, M. D., Wu, L. F., Altschuler, S. J., and Rando, O. J. (2005) Science 309, 626-630
27. Pokholok, D. K., Harbison, C. T., Levine, S., Cole, M., Hannett, N. M., Lee, T. I., Bell, G. W., Walker, K., Rolfe, P. A., Herbolsheimer, E., Zeitlinger, J., Lewitter, F., Gifford, D. K., and Young, R. A. (2005) Cell 122, 517-527
28. Figueroa-Angulo, E., Martinez-Calvillo, S., Lopez-Villasenor, I., and Hernandez, R. (2003) FEMS Microbiol. Lett. 225, 221-225
29. Nunes, L. R., Carvalho, M. R., Shakarian, A. M., and Buck, G. A. (1997) Gene 188, 157-168
30. Campbell, D. A., Thornton, D. A., and Boothroyd, J. C. (1984) Nature 311, 350-355
31. Ben Amar, M. F., Jefferies, D., Pays, A., Bakalara, N., Kendall, G., and Pays, E. (1991) Nucleic Acids Res. 19, 5857-5862
32. Lee, C. K., Shibata, Y., Rao, B., Strahl, B. D., and Lieb, J. D. (2004) Nat. Genet. 36, 900-905
33. Hitchcock, R. A., Thomas, S., Campbell, D. A., and Sturm, N. R. (2007) BMC Microbiol. 7, 44
34. Schimanski, B., Laufer, G., Gontcharova, L., and Gunzl, A. (2004) Nucleic Acids Res. 32, 700-709
35. Sloof, P., Bos, J. L., Konings, A. F., Menke, H. H., Borst, P., Gutteridge, W. E., and Leon, W. (1983) J. Mol. Biol. 167, 1-21
36. Vazquez, M., Lorenzi, H., Schijman, A. G., Ben-Dov, C., and Levin, M. J. (1999) Gene 239, 207-216
37. Villanueva, M. S., Williams, S. P., Beard, C. B., Richards, F. F., and Aksoy, S. (1991) Mol. Cell. Biol. 11, 6139-6148
38. Buscaglia, C. A., Campo, V. A., Frasch, A. C., and Di Noia, J. M. (2006) Nat. Rev. Microbiol. 4, 229-236
39. Freitas-Junior, L. H., Hernandez-Rivas, R., Ralph, S. A., Montiel-Condado, D., Ruvalcaba-Salazar, O. K., Rojas-Meza, A. P., Mancio-Silva, L., Leal-Silvestre, R. J., Gontijo, A. M., Shorte, S., and Scherf, A. (2005) Cell 121, 25-36
40. Navarro, M., Cross, G. A., and Wirtz, E. (1999) EMBO J. 18, 2265-2272
41. Hall, N., Berriman, M., Lennard, N. J., Harris, B. R., Hertz-Fowler, C., Bart-Delabesse, E. N., Gerrard, C. S., Atkin, R. J., Barron, A. J., Bowman, S., Bray-Allen, S. P., Bringaud, F., Clark, L. N., Corton, C. H., Cronin, A., Davies, R., Doggett, J., Fraser, A., Gruter, E., Hall, S., Harper, A. D., Kay, M. P., Leech, V., Mayes, R., Price, C., Quail, M. A., Rabbinowitsch, E., Reitter, C., Rutherford, K., Sasse, J., Sharp, S., Shownkeen, R., MacLeod, A., Taylor, S., Tweedie, A., Turner, C. M., Tait, A., Gull, K., Barrell, B., and Melville, S. E. (2003) Nucleic Acids Res. 31, 4864-4873
42. Obado, S. O., Taylor, M. C., Wilkinson, S. R., Bromley, E. V., and Kelly, J. M. (2005) Genome Res. 15, 36-43
43. Zink, D. (2006) Chromosoma 115, 273-287
44. Trinklein, N. D., Aldred, S. F., Hartman, S. J., Schroeder, D. I., Otillar, R. P., and Myers, R. M. (2004) Genome Res. 14, 62-66
45. Kruglyak, S., and Tang, H. (2000) Trends Genet. 16, 109-111
46. Chen, N., and Stein, L. D. (2006) Genome Res. 16, 606-617
47. Blumenthal, T. (2004) Brief. Funct. Genomics Proteomics 3, 199-211
48. Gromak, N., West, S., and Proudfoot, N. J. (2006) Mol. Cell. Biol. 26, 3986-3996
49. Clayton, C. E. (2002) EMBO J. 21, 1881-1888
50. Siegel, T. N., Kawahara, T., Degrasse, J. A., Janzen, C. J., Horn, D., and Cross, G. A. (2008) Mol. Microbiol. 67, 762-771
51. Mandava, V., Janzen, C. J., and Cross, G. A. (2008) Biochem. Biophys. Res. Commun. 368, 846-851
52. Martinez-Calvillo, S., Saxena, A., Green, A., Leland, A., and Myler, P. J. (2007) Int. J. Parasitol. 37, 491-502
53. Andrews, K. T., Walduck, A., Kelso, M. J., Fairlie, D. P., Saul, A., and Parsons, P. G. (2000) Int. J. Parasitol. 30, 761-768
54. Ouaissi, M., and Ouaissi, A. (2006) J. Biomed. Biotechnol. 2006, 13474
55. Murray, P. J., Kranz, M., Ladlow, M., Taylor, S., Berst, F., Holmes, A. B., Keavey, K. N., Jaxa-Chamiec, A., Seale, P. W., Stead, P., Upton, R. J., Croft, S. L., Clegg, W., and Elsegood, M. R. (2001) Bioorg. Med. Chem. Lett. 11, 773-776